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Aliases for FLJ12825 Gene

Subcategory (RNA class) for FLJ12825 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for FLJ12825 Gene

  • Uncharacterized LOC440101 3 5

External Ids for FLJ12825 Gene

Previous GeneCards Identifiers for FLJ12825 Gene

  • GC12P052737
  • GC12U900558
  • GC12P054452

Summaries for FLJ12825 Gene

GeneCards Summary for FLJ12825 Gene

FLJ12825 (Uncharacterized LOC440101) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for FLJ12825 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FLJ12825 Gene

Genomics for FLJ12825 Gene

GeneHancer (GH) Regulatory Elements for FLJ12825 Gene

Promoters and enhancers for FLJ12825 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12I054188 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 28.5 +130.6 130559 1.6 PKNOX1 ARNT ARID4B SIN3A ETS1 ZNF766 GLIS2 ZNF213 E2F8 ELK1 LOC105369777 SMUG1 FLJ12825 HOXC8 HOXC-AS1 HOXC-AS2 HOXC9 HOXC6 ENSG00000257605 MIR615
GH12I054130 Enhancer 1 ENCODE dbSUPER 40 +76.5 76509 8.3 FOXA2 ZSCAN4 KLF17 FEZF1 RAD21 RARA ZNF121 ARID2 MIXL1 EGR2 FLJ12825 TARBP2 SMUG1 MIR615 HOXC4 HOXC5 HOXC6 ENSG00000260470 HOXC8 HOXC-AS2
GH12I054140 Enhancer 0.9 ENCODE dbSUPER 37.5 +83.4 83417 2.4 BCOR KLF1 MAZ L3MBTL2 SP2 KLF17 ZMYM3 ZNF398 ZNF121 GLIS1 SMUG1-AS1 FLJ12825 SMUG1 HOXC5 MIR196A2 HOXC6 HOXC-AS3 HOXC10 MIR615 HOXC4
GH12I054173 Enhancer 1.1 Ensembl ENCODE 26.7 +115.1 115091 0.7 HDGF INSM2 KLF17 BMI1 ZNF2 ZNF48 ZEB1 ZNF335 GLIS2 EGR1 FLJ12825 GC12M054122 ENSG00000257534 GC12P054155 SMUG1
GH12I054009 Promoter/Enhancer 3.2 VISTA EPDnew FANTOM5 Ensembl ENCODE dbSUPER 7.6 -36.2 -36158 25.8 HDGF PKNOX1 SMAD1 ARNT SIN3A FEZF1 ZNF2 POLR2B CBX5 ZNF213 HOXC4 HOXC6 HOXC5 GC12P054071 GC12P054093 PIR46464 PIR59725 PIR59985 PIR53546 AAAS
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around FLJ12825 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the FLJ12825 gene promoter:

Genomic Locations for FLJ12825 Gene

Genomic Locations for FLJ12825 Gene
chr12:54,058,254-54,122,234
(GRCh38/hg38)
Size:
63,981 bases
Orientation:
Plus strand
chr12:54,452,038-54,516,018
(GRCh37/hg19)

Genomic View for FLJ12825 Gene

Genes around FLJ12825 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FLJ12825 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FLJ12825 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FLJ12825 Gene

Proteins for FLJ12825 Gene

Post-translational modifications for FLJ12825 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FLJ12825 Gene

Domains & Families for FLJ12825 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FLJ12825 Gene

Function for FLJ12825 Gene

Phenotypes From GWAS Catalog for FLJ12825 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FLJ12825 Gene

Localization for FLJ12825 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FLJ12825 Gene

Pathways & Interactions for FLJ12825 Gene

SuperPathways for FLJ12825 Gene

No Data Available

Interacting Proteins for FLJ12825 Gene

Gene Ontology (GO) - Biological Process for FLJ12825 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FLJ12825 Gene

Drugs & Compounds for FLJ12825 Gene

No Compound Related Data Available

Transcripts for FLJ12825 Gene

mRNA/cDNA for FLJ12825 Gene

(3) Additional mRNA sequences :
(8) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FLJ12825 Gene

Uncharacterized LOC440101:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FLJ12825 Gene

No ASD Table

Relevant External Links for FLJ12825 Gene

GeneLoc Exon Structure for
FLJ12825

Expression for FLJ12825 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FLJ12825 Gene

mRNA differential expression in normal tissues according to GTEx for FLJ12825 Gene

This gene is overexpressed in Testis (x5.1).

SOURCE GeneReport for Unigene cluster for FLJ12825 Gene:

Hs.350378
genes like me logo Genes that share expression patterns with FLJ12825: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FLJ12825 Gene

Orthologs for FLJ12825 Gene

Evolution for FLJ12825 Gene

ENSEMBL:
Gene Tree for FLJ12825 (if available)
TreeFam:
Gene Tree for FLJ12825 (if available)

No data available for Orthologs for FLJ12825 Gene

Paralogs for FLJ12825 Gene

No data available for Paralogs for FLJ12825 Gene

Variants for FLJ12825 Gene

Sequence variations from dbSNP and Humsavar for FLJ12825 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000037742 -- 54,096,716(+) T/C intron_variant
rs1000053722 -- 54,096,584(+) C/T intron_variant
rs1000107043 -- 54,090,514(+) C/T intron_variant
rs1000132180 -- 54,109,209(+) A/G intron_variant
rs1000136198 -- 54,090,178(+) A/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for FLJ12825 Gene

Variant ID Type Subtype PubMed ID
esv1009650 CNV gain 20482838
esv2547372 CNV deletion 19546169
esv26073 CNV gain 19812545
esv2759900 CNV gain+loss 17122850
nsv1069671 CNV deletion 25765185
nsv1115434 CNV duplication 24896259
nsv1119958 CNV deletion 24896259
nsv1150711 CNV duplication 26484159
nsv428282 CNV gain 18775914
nsv558999 CNV gain 21841781
nsv716 CNV insertion 18451855
nsv832418 CNV loss 17160897
nsv832419 CNV loss 17160897
nsv8973 CNV loss 18304495
nsv973072 CNV duplication 23825009

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for FLJ12825 Gene

Disorders for FLJ12825 Gene

Additional Disease Information for FLJ12825

No disorders were found for FLJ12825 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FLJ12825 Gene

Publications for FLJ12825 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for FLJ12825 Gene

Sources for FLJ12825 Gene

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