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Aliases for FLJ12825 Gene

Subcategory (RNA class) for FLJ12825 Gene

lncRNA

Quality Score for this RNA gene is

2

Aliases for FLJ12825 Gene

  • Uncharacterized LOC440101 3

External Ids for FLJ12825 Gene

ORGUL Members for FLJ12825 Gene

Summaries for FLJ12825 Gene

GeneCards Summary for FLJ12825 Gene

FLJ12825 (Uncharacterized LOC440101) is a RNA Gene, and belongs to lncRNA RNA class.

fRNAdb sequence ontologies for FLJ12825 Gene - the ORGUL cluster for this gene includes several descriptions:

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

  • antisense_RNA: Antisense RNA is RNA that is transcribed from the coding, rather than the template, strand of DNA. It is therefore complementary to mRNA.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for FLJ12825 Gene

Genomics for FLJ12825 Gene

Genomic Location for FLJ12825 Gene

Start:
54,058,254 bp from pter
End:
54,122,234 bp from pter
Size:
63,981 bases
Orientation:
Plus strand

Genomic View for FLJ12825 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FLJ12825 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FLJ12825 Gene

Regulatory Elements for FLJ12825 Gene

Proteins for FLJ12825 Gene

Post-translational modifications for FLJ12825 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FLJ12825 Gene

Domains for FLJ12825 Gene

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for FLJ12825 Gene

Function for FLJ12825 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for FLJ12825 Gene

Localization for FLJ12825 Gene

No data available for Gene Ontology (GO) - Cellular Components for FLJ12825 Gene

Pathways for FLJ12825 Gene

SuperPathways for FLJ12825 Gene

No Data Available

Interacting Proteins for FLJ12825 Gene

Gene Ontology (GO) - Biological Process for FLJ12825 Gene

None

No data available for Pathways by source for FLJ12825 Gene

Transcripts for FLJ12825 Gene

mRNA/cDNA for FLJ12825 Gene

(3) Additional mRNA sequences :
(8) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FLJ12825 Gene

Uncharacterized LOC440101:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FLJ12825 Gene

No ASD Table

Relevant External Links for FLJ12825 Gene

GeneLoc Exon Structure for
FLJ12825

Expression for FLJ12825 Gene

mRNA expression in normal human tissues for FLJ12825 Gene

mRNA differential expression in normal tissues according to GTEx for FLJ12825 Gene

This gene is overexpressed in Testis (5.1).

SOURCE GeneReport for Unigene cluster for FLJ12825 Gene Hs.350378

genes like me logo Genes that share expressions with FLJ12825: view

Orthologs for FLJ12825 Gene

Evolution for FLJ12825 Gene

ENSEMBL:
Gene Tree for FLJ12825 (if available)
TreeFam:
Gene Tree for FLJ12825 (if available)

No data available for Orthologs for FLJ12825 Gene

Paralogs for FLJ12825 Gene

No data available for Paralogs for FLJ12825 Gene

Variants for FLJ12825 Gene

Sequence variations from dbSNP and Humsavar for FLJ12825 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type MAF
rs725029 -- 54,072,311(+) CCAGA(A/G)GATAT intron-variant
rs1006705 -- 54,065,146(-) cctgc(C/T)tcgat intron-variant
rs1843637 -- 54,108,201(+) ACAAT(A/G)ACTGG intron-variant
rs1872632 -- 54,099,880(+) TTTAT(A/G)TAATG intron-variant
rs1872634 -- 54,116,172(-) CAAAC(A/G)TGGGC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FLJ12825 Gene

Variant ID Type Subtype PubMed ID
nsv899100 CNV Loss 21882294
dgv512e1 CNV Complex 17122850
nsv428282 CNV Gain 18775914
nsv832418 CNV Loss 17160897
nsv716 CNV Insertion 18451855
esv2547372 CNV Deletion 19546169
nsv832419 CNV Loss 17160897
esv1009650 CNV Gain 20482838
esv26073 CNV Gain 19812545
nsv8973 CNV Loss 18304495

Relevant External Links for FLJ12825 Gene

HapMap Linkage Disequilibrium report
FLJ12825

Disorders for FLJ12825 Gene

No disorders were found for FLJ12825 Gene.

No data available for UniProtKB/Swiss-Prot for FLJ12825 Gene

Publications for FLJ12825 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3

Products for FLJ12825 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate FLJ12825
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for FLJ12825
    • Block miRNA regulation of FLJ12825 using miScript Target Protectors

    Sources for FLJ12825 Gene

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