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Aliases for FLJ12825 Gene

Subcategory (RNA class) for FLJ12825 Gene


Quality Score for this RNA gene is


Aliases for FLJ12825 Gene

  • Uncharacterized LOC440101 3 5

External Ids for FLJ12825 Gene

Previous GeneCards Identifiers for FLJ12825 Gene

  • GC12P052737
  • GC12U900558
  • GC12P054452

Summaries for FLJ12825 Gene

GeneCards Summary for FLJ12825 Gene

FLJ12825 (Uncharacterized LOC440101) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for FLJ12825 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FLJ12825 Gene

Genomics for FLJ12825 Gene

Regulatory Elements for FLJ12825 Gene

Enhancers for FLJ12825 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12H054130 1.1 ENCODE dbSUPER 40 +76.5 76510 8.3 FOXA2 ZSCAN4 KLF17 FEZF1 RAD21 RARA ZNF121 MIXL1 EGR2 ZNF654 FLJ12825 TARBP2 SMUG1 MIR615 HOXC4 HOXC5 HOXC6 ENSG00000260470 HOXC8 HOXC9
GH12H054140 1 ENCODE dbSUPER 37.5 +83.4 83418 2.4 BCOR MAZ KLF1 L3MBTL2 SP2 KLF17 ZMYM3 ZNF398 ZNF121 GLIS1 FLJ12825 SMUG1 HOXC5 MIR196A2 HOXC6 HOXC10 HOXC-AS3 MIR615 HOXC4 HOXC8
GH12H054173 1.1 Ensembl ENCODE 26.7 +115.1 115092 0.7 HDGF INSM2 KLF17 BMI1 ZNF2 ZEB1 GLIS2 EGR1 ZNF366 KLF7 FLJ12825 ENSG00000257534 GC12M054122
GH12H054188 1 ENCODE 28 +130.9 130852 1 PKNOX1 ATF1 ARNT ARID4B SIN3A ETS1 ZNF766 GLIS2 GATA2 ELK1 FLJ12825 HOXC8 HOXC-AS1 HOXC-AS2 HOXC9 HOXC6 ENSG00000257605 MIR615 HOXC4 HOXC5
GH12H054009 2.5 VISTA FANTOM5 Ensembl ENCODE dbSUPER 7.5 -36.2 -36152 25.8 HDGF PKNOX1 ARNT SIN3A FEZF1 ZNF2 CBX5 ZNF143 ZNF207 DEK RARG AAAS ATF7 ENSG00000260470 LOC105378250 HOXC8 SMUG1 IGFBP6 HOXC-AS1 CBX5
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FLJ12825 on UCSC Golden Path with GeneCards custom track

Genomic Locations for FLJ12825 Gene

Genomic Locations for FLJ12825 Gene
63,981 bases
Plus strand

Genomic View for FLJ12825 Gene

Genes around FLJ12825 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FLJ12825 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FLJ12825 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FLJ12825 Gene

Proteins for FLJ12825 Gene

Post-translational modifications for FLJ12825 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FLJ12825 Gene

Domains & Families for FLJ12825 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FLJ12825 Gene

Function for FLJ12825 Gene

Phenotypes From GWAS Catalog for FLJ12825 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FLJ12825 Gene

Localization for FLJ12825 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FLJ12825 Gene

Pathways & Interactions for FLJ12825 Gene

SuperPathways for FLJ12825 Gene

No Data Available

Interacting Proteins for FLJ12825 Gene

Gene Ontology (GO) - Biological Process for FLJ12825 Gene


No data available for Pathways by source and SIGNOR curated interactions for FLJ12825 Gene

Drugs & Compounds for FLJ12825 Gene

No Compound Related Data Available

Transcripts for FLJ12825 Gene

mRNA/cDNA for FLJ12825 Gene

(3) Additional mRNA sequences :
(8) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FLJ12825 Gene

Uncharacterized LOC440101:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FLJ12825 Gene

No ASD Table

Relevant External Links for FLJ12825 Gene

GeneLoc Exon Structure for

Expression for FLJ12825 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FLJ12825 Gene

mRNA differential expression in normal tissues according to GTEx for FLJ12825 Gene

This gene is overexpressed in Testis (x5.1).

SOURCE GeneReport for Unigene cluster for FLJ12825 Gene:

genes like me logo Genes that share expression patterns with FLJ12825: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FLJ12825 Gene

Orthologs for FLJ12825 Gene

Evolution for FLJ12825 Gene

Gene Tree for FLJ12825 (if available)
Gene Tree for FLJ12825 (if available)

No data available for Orthologs for FLJ12825 Gene

Paralogs for FLJ12825 Gene

No data available for Paralogs for FLJ12825 Gene

Variants for FLJ12825 Gene

Sequence variations from dbSNP and Humsavar for FLJ12825 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1000037742 -- 54,096,716(+) TAAAG(C/T)TATGC intron-variant
rs1000053722 -- 54,096,584(+) GATCA(C/T)TGTTT intron-variant
rs1000107043 -- 54,090,514(+) CAGCG(C/T)GTCCT intron-variant
rs1000132180 -- 54,109,209(+) ATCCC(A/G)GCAAG intron-variant
rs1000136198 -- 54,090,178(+) AAGAG(A/C)GAGCG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FLJ12825 Gene

Variant ID Type Subtype PubMed ID
nsv973072 CNV duplication 23825009
nsv8973 CNV loss 18304495
nsv832419 CNV loss 17160897
nsv832418 CNV loss 17160897
nsv716 CNV insertion 18451855
nsv558999 CNV gain 21841781
nsv428282 CNV gain 18775914
nsv1150711 CNV duplication 26484159
nsv1119958 CNV deletion 24896259
nsv1115434 CNV duplication 24896259
nsv1069671 CNV deletion 25765185
esv2759900 CNV gain+loss 17122850
esv26073 CNV gain 19812545
esv2547372 CNV deletion 19546169
esv1009650 CNV gain 20482838

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for FLJ12825 Gene

Disorders for FLJ12825 Gene

Relevant External Links for FLJ12825

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for FLJ12825 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FLJ12825 Gene

Publications for FLJ12825 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 60
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60

Products for FLJ12825 Gene

Sources for FLJ12825 Gene

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