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Aliases for FLJ12825 Gene

Subcategory (RNA class) for FLJ12825 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for FLJ12825 Gene

  • Uncharacterized LOC440101 3 5

External Ids for FLJ12825 Gene

Previous GeneCards Identifiers for FLJ12825 Gene

  • GC12P052737
  • GC12U900558
  • GC12P054452

Summaries for FLJ12825 Gene

GeneCards Summary for FLJ12825 Gene

FLJ12825 (Uncharacterized LOC440101) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FLJ12825 Gene

Genomics for FLJ12825 Gene

Regulatory Elements for FLJ12825 Gene

Enhancers for FLJ12825 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12F054140 1 Ensembl ENCODE 37.5 +83.4 83418 2.4 BCOR CTCF KLF1 TEAD4 KLF17 ZMYM3 ZNF121 PRDM10 ZNF600 MAZ FLJ12825 SMUG1 HOXC5 MIR196A2 HOXC-AS3 HOXC10 HOXC6 MIR615 HOXC4 HOXC8
GH12F054130 0.9 ENCODE 40 +76.5 76510 8.3 KLF17 FEZF1 RAD21 RARA ZNF121 MIXL1 DEK EGR2 ZNF263 ZNF654 FLJ12825 MAP3K12 SMUG1 MIR615 HOXC4 HOXC5 HOXC6 ENSG00000260470 HOXC8 HOXC-AS2
GH12F054188 1 ENCODE 28 +130.9 130852 1.0 PKNOX1 ATF1 CREB3L1 ARID4B SIN3A ETS1 GLIS2 GATA2 ELK1 ZNF143 FLJ12825 HOXC8 HOXC-AS2 HOXC9 HOXC-AS1 HOXC6 MIR615 HOXC4 HOXC5 LOC102724030
GH12F054009 2.2 VISTA FANTOM5 Ensembl ENCODE 7.5 -36.2 -36246 25.6 HDGF PKNOX1 ARNT WRNIP1 SIN3A FEZF1 YBX1 ZNF2 YY1 ZNF143 LOC105378250 HOXC8 HOXC-AS1 MAP3K12 ZNF740 C12orf10 HOXC4 FLJ12825 HOXC9 HOXC6
GH12F054079 1.1 ENCODE 13.6 +23.0 23035 4.6 HDGF PKNOX1 ARNT CREB3L1 FEZF1 ZNF2 CBX5 REST KAT8 SMARCA4 FLJ12825 MIR3198-2 MIR615 HOXC4 HOXC5 MAP3K12 HOXC6 HOXC8 HOXC-AS1 HOXC-AS2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FLJ12825 on UCSC Golden Path with GeneCards custom track

Genomic Location for FLJ12825 Gene

Chromosome:
12
Start:
54,058,254 bp from pter
End:
54,122,234 bp from pter
Size:
63,981 bases
Orientation:
Plus strand

Genomic View for FLJ12825 Gene

Genes around FLJ12825 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FLJ12825 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FLJ12825 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FLJ12825 Gene

Proteins for FLJ12825 Gene

Post-translational modifications for FLJ12825 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FLJ12825 Gene

Domains & Families for FLJ12825 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FLJ12825 Gene

Function for FLJ12825 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FLJ12825 Gene

Localization for FLJ12825 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FLJ12825 Gene

Pathways & Interactions for FLJ12825 Gene

SuperPathways for FLJ12825 Gene

No Data Available

Interacting Proteins for FLJ12825 Gene

Gene Ontology (GO) - Biological Process for FLJ12825 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FLJ12825 Gene

Transcripts for FLJ12825 Gene

mRNA/cDNA for FLJ12825 Gene

(3) Additional mRNA sequences :
(8) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FLJ12825 Gene

Uncharacterized LOC440101:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FLJ12825 Gene

No ASD Table

Relevant External Links for FLJ12825 Gene

GeneLoc Exon Structure for
FLJ12825

Expression for FLJ12825 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FLJ12825 Gene

mRNA differential expression in normal tissues according to GTEx for FLJ12825 Gene

This gene is overexpressed in Testis (x5.1).

SOURCE GeneReport for Unigene cluster for FLJ12825 Gene:

Hs.350378
genes like me logo Genes that share expression patterns with FLJ12825: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for FLJ12825 Gene

Orthologs for FLJ12825 Gene

Evolution for FLJ12825 Gene

ENSEMBL:
Gene Tree for FLJ12825 (if available)
TreeFam:
Gene Tree for FLJ12825 (if available)

No data available for Orthologs for FLJ12825 Gene

Paralogs for FLJ12825 Gene

No data available for Paralogs for FLJ12825 Gene

Variants for FLJ12825 Gene

Sequence variations from dbSNP and Humsavar for FLJ12825 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1006705 -- 54,065,146(-) cctgc(C/T)tcgat intron-variant
rs10437926 -- 54,109,937(+) CCGCC(A/G)TGGTT intron-variant
rs1055289 -- 54,102,391(+) TCAAC(A/G)GATAT intron-variant, nc-transcript-variant
rs1055290 -- 54,102,400(+) ATTTA(C/T)TGGGC intron-variant, nc-transcript-variant
rs1055292 -- 54,102,406(+) TGGGC(A/G)TCCTC intron-variant, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for FLJ12825 Gene

Variant ID Type Subtype PubMed ID
esv1009650 CNV gain 20482838
esv2547372 CNV deletion 19546169
esv26073 CNV gain 19812545
esv2759900 CNV gain+loss 17122850
nsv1069671 CNV deletion 25765185
nsv1115434 CNV duplication 24896259
nsv1119958 CNV deletion 24896259
nsv1150711 CNV duplication 26484159
nsv428282 CNV gain 18775914
nsv558999 CNV gain 21841781
nsv716 CNV insertion 18451855
nsv832418 CNV loss 17160897
nsv832419 CNV loss 17160897
nsv8973 CNV loss 18304495
nsv973072 CNV duplication 23825009

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for FLJ12825 Gene

Disorders for FLJ12825 Gene

Relevant External Links for FLJ12825

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FLJ12825

No disorders were found for FLJ12825 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FLJ12825 Gene

Publications for FLJ12825 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for FLJ12825 Gene

Sources for FLJ12825 Gene

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