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FLI1 Gene

protein-coding   GIFtS: 69

GC11P128069
Friend leukemia virus integration 1
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
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Aliases
EWSR2 1, 2
SIC-1 1, 2
Descriptions
ERGB transcription factor 3
Fli-1 proto-oncogene 3
Friend leukemia virus integration 1 2
External Ids
HGNC: 37491
Entrez Gene: 23132
UniProtKB: Q015433
Ensembl: ENSG000001517027
Search outside databases for aliases for FLI1 gene

Previous GC identifers: GC11P130564 GC11P130076 GC11P128596 GC11P128101

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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UniProtKB/Swiss-Prot: FLI1_HUMAN, Q01543
Function: Sequence-specific transcriptional activator. Recognizes the DNA sequence
5'-C[CA]GGAAGT-3'

Gene Wiki entry for FLI1

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
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Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the FLI1 gene  

Entrez Gene cytogenetic band: 11q24.1-q24.3   Ensembl cytogenetic band:  11q24.3   HGNC cytogenetic band: 11q24.1-q24.3

FLI1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 11         GeneLoc Exon Structure

GeneLoc location for GC11P128069:     (about GC identifiers)

Start:
128,069,199 bp from pter
End:
128,187,521 bp from pter
Size:
118,323 bases
Orientation:
plus strand
RefSeq DNA sequence:
NC_000011.8  NT_033899.7  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: FLI1_HUMAN, Q01543 (See protein sequence)
Recommended Name: Friend leukemia integration 1 transcription factor  
Size: 452 amino acids; 50982 Da
Subunit: Can form homodimers or heterodimers with ETV6/TEL1
Subcellular location: Nucleus
Miscellaneous: Located on a fragment of chromosome 11 flanked on the centromeric side by the acute
lymphoblastic leukemia-associated t(4;11)(q21;q23) translocation breakpoint and on the telomeric
side by the Ewing- and neuroepithelioma-associated t(11;22) (q24;q12) breakpoint
PDB structures from and Proteopedia :
1FLI (3D)    1X66 (3D)    2YTU (3D)    
Secondary accessions: Q14319 Q92480 Q9UE07
Alternative splicing: 2 isoforms:  Q01543-1   Q01543-2   

Post-translational modifications:

  • View phosphorylation sites using PhosphoSite2


  • REFSEQ proteins: NP_002008.2  

    ENSEMBL proteins: 
    ENSP00000339627 ENSP00000281428 


    Human Recombinant Proteins 
    Browse Drug Discovery Central at Invitrogen for human recombinant proteins
    Browse Purified and Recombinant Proteins at Millipore
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    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    Recombinant Proteins from Abcam (FLI1)
    Human Recombinant Proteins from Abnova (FLI1)
                  OriGene Purified Recombinant Human Protein: FLI1 

    1 Gene Ontology (GO) cellular component term (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634 nucleus IEA--
    About this table

    Antibodies for FLI1: 
    Invitrogen Antibodies for FLI1
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    Antibodies from Abcam (FLI1), each with their AbpromiseSM
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    Novus Biologicals Antibodies for FLI1

    Assays for FLI1: 
    Browse Invitrogen for biochemical assays
    Browse Kits and Assays available from Millipore
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    Browse biochemical assays available from Enzo Life Sciences

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    4 InterPro domains/families:
     IPR011991 Wing_hlx_DNA_bd
     IPR003118 SAM_PNT
     IPR013761 SAM_type
     IPR000418 Ets


       GeneDecks  FLI1 for the domains selected above  
    About GeneDecksing

    Graphical View of Domain Structure for InterPro Entry Q01543

    ProtoNet protein and cluster: Q01543

    1 Blocks protein family: IPB003118 Sterile alpha motif (SAM)/Pointed domain

    UniProtKB/Swiss-Prot: FLI1_HUMAN, Q01543
    Similarity: Belongs to the ETS family
    Similarity: Contains 1 ETS DNA-binding domain
    Similarity: Contains 1 PNT (pointed) domain

    (According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
    shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
    RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (FLI1)
    Browse for Gene Knock-down Tools from Millipore
    Abnova Chimera RNAi Products for Gene knock-down (FLI1)
                  OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002017

                  Applied Biosystems Silencer® siRNAs for FLI1

                  Sigma-Aldrich siRNA for FLI1  
                         Sigma-Aldrich shRNA Panels and shRNA for FLI1  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Clones:Invitrogen Clones for FLI1
    Browse Clones for the Expression of Recombinant Proteins Available from Millipore
                  OriGene GFP tagged cDNA clone in CMV expression vector: NM_002017
                                     Myc/DDK tagged cDNA clone in CMV expression vector: NM_002017
                                     untagged cDNA clone in CMV expression vector: NM_002017 

    Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
                  OriGene genome-wide validated SYBR primer pairs: NM_002017

    UniProtKB/Swiss-Prot: FLI1_HUMAN, Q01543
    Function: Sequence-specific transcriptional activator. Recognizes the DNA sequence
    5'-C[CA]GGAAGT-3'

    Genatlas biochemistry entry for FLI1:
    Friend and Cas-Br-E murine leukemia virus integration site

    9 MGI mutant phenotypes (inferred from 5 alleles(MGI details for Fli1):

    embryogenesisgrowth/sizehematopoietic systemimmune system
    lethality-prenatal/perinatalliver/biliary systemnervous systemtumorigenesis

    2 Gene Ontology (GO) molecular function terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003700 transcription factor activity TAS10891501
    GO:0043565 sequence-specific DNA binding IEA--
    About this table

    (Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
    Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section


     Gene Network CentralTM Interacting Genes and Proteins Network for  FLI1 


    5/17 Interacting proteins for FLI1 (Q015431, 2 ENSP000003396273) via UniProtKB, MINT, and/or STRING (see all 17 )
    InteractantInteraction Details
    GeneCardExternal ID(s)
    Grip1 Grip1 (xeno)Q925T61EBI-2271018, EBI-537752
    SMAD9O151982MINT-61936 MINT-62072
    EWSR1ENSP000003305163STRING (score=.984)
    EP300ENSP000002632533STRING (score=.926)
    CCND1ENSP000002275073STRING (score=.911)
    About this table

    4 Gene Ontology (GO) biological process terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006350 transcription IEA--
    GO:0006355 regulation of transcription, DNA-dependent IEA--
    GO:0007599 hemostasis TAS10891501
    GO:0009887 organ morphogenesis TAS10891501
    About this table
    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
    About This Section

    Browse drugs & compounds from Enzo Life Sciences
    Browse Small Molecules at Sigma-Aldrich

    Browse Tocris compounds for FLI1
    1 Novoseek chemical compound relationship for FLI1 gene
    Compound   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    oligonucleotide 0.00 1 8238248 (1)
    About this table


    (GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView,
    non coding RNAs according to RNAdb,
    ESTs according to GeneTide,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from Invitrogen, Millipore, and/or Abnova,
    siRNAs from Applied Biosystems, Sigma-Aldrich,
    shRNA from Sigma-Aldrich, OriGene,
    Tagged/untagged cDNA clones from OriGene,
    Expression Assays from Applied Biosystems)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (FLI1)
    Browse for Gene Knock-down Tools from Millipore
    Abnova Chimera RNAi Products for Gene knock-down (FLI1)
                  OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002017

                  Sigma-Aldrich siRNA for FLI1  
                         Sigma-Aldrich shRNA Panels and shRNA for FLI1  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Applied Biosystems Silencer® siRNAs: 

    NM_002017  

    REFSEQ mRNAs for FLI1 gene: 

    NM_002017.3   

    Applied Biosystems TaqMan ® Gene Expression Assays: 

    NM_002017  

                  OriGene GFP tagged cDNA clone in CMV expression vector: NM_002017
                                     Myc/DDK tagged cDNA clone in CMV expression vector: NM_002017
                                     untagged cDNA clone in CMV expression vector: NM_002017 

    Additional cDNA sequence: 

    AK294279.1 AK300153.1 AK313370.1 AY029368.1 BC001670.1 BC010115.1 CR600005.1 M93255.1 
    M98833.3 S45205.1 S64709.1 S72620.1 X67001.1 

    6 DOTS entries:

    DT.315565  DT.91981587  DT.207655  DT.91669639  DT.100665472  DT.99933688 

    24/132 AceView cDNA sequences (see all 132 ):

    AW340324 AA256529 BF899604 AA863340 BQ215477 BC001670 BC010115 AU118654 
    BQ642921 AI457281 AI354789 CR600005 BG257780 BQ953977 BF224181 AI468916 
    BX281437 AA862270 AI216469 BQ232274 BX328036 AA805688 AA664465 AW965804 

    highest scoring ESTs for FLI1:

    AA210631 AA234465 AA312319 AA805688 AA862270 AA917046 AI128180 AI273710 AI372049 AI376527 

    Unigene Cluster for FLI1:

    Friend leukemia virus integration 1
    Hs.504281  [show with all ESTs]
    Unigene Representative Sequence: NM_002017


    GeneLoc Exon Structure

    5 Alternative Splicing Database (ASD) splice patterns (SP) for FLI1

    ExUns: 1 ^ 2 ^ 3a · 3b ^ 4 ^ 5a · 5b ^ 6 ^ 7 ^ 8a · 8b ^ 9 ^ 10 ^ 11a · 11b · 11c
    SP1:                                      -                 -                                       
    SP2:                          -           -                 -                                       
    SP3:        -                 -           -                                                         
    SP4:                                                                                                
    SP5:                          -                                                                     

    About this scheme

    ECgene alternative splicing isoforms for FLI1

    2 Ensembl transcripts including schematic representations:
    ENST00000344954  ENST00000281428  
    (Experimental results according to 1GeneNote and GNF BioGPS,
    probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
    Expression Assays from Applied Biosystems )
    About This Section

    FLI1 expression in normal and diseased human tissues

     Applied Biosystems TaqMan ® Gene Expression Assays for FLI1

    1 / 2 / 3

    9 probe-sets matching FLI1 gene


    Affymetrix
    probe-set
    Array  GeneAnnot data GeneNote data GeneTide data
    # genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
    41425_at2, 3 U95-A 1 1.00 1.00 1.00 1.00 M98833 0.80 1.00 0.91 1

    204236_at2, 3 U133-A 1 1.00 1.00 -- -- NM_002017 0.40 1.00 0.76 1

    210786_s_at2, 3 U133-A 1 1.00 1.00 -- -- M93255 0.80 1.00 0.91 1

    237722_at2, 3 U133-B 1 1.00 1.00 -- -- AW444915 0.40 1.00 0.76 1

    211825_s_at2, 3 U133-A 2 1.00 0.50 -- -- AF327066 0.20 0.33 0.27 2

    204236_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --

    210786_s_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --

    237722_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --

    211825_s_at2 U133Plus2 2 1.00 0.50 -- -- -- -- -- -- --
    GeneDecks  FLI1 for binary patterns associated with the probe-sets selected above  
    About GeneDecksing
    About this table    
    Data from (Publications) and GNF BioGPS
        About these images
    About these images

    CGAP SAGE TAG: TTGTAAAATA

    SOURCE GeneReport for Unigene cluster: Hs.504281

    Expression variation in blood from EXPOLDB for FLI1

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
    About This Section


    Orthologs for FLI1 gene from 5/11 species (see all 11 )
    Organism Gene Locus Description Human
    Similarity
    NCBI accessions
    dog
    (Canis familiaris)
    FLI11   -- Friend leukemia virus integration 1 92.54(n)
    97.56(a)
    489286  XM_851932.1  XP_857025.1 
    chimpanzee
    (Pan troglodytes)
    FLI11   -- Friend leukemia virus integration 1 99.78(n)
    100(a)
    451659  XM_508856.2  XP_508856.2 
    cow
    (Bos taurus)
    FLI11   -- Friend leukemia virus integration 1 91.89(n)
    95.8(a)
    529124  NM_001046298.1  NP_001039763.1 
    rat
    (Rattus norvegicus)
    Fli11   -- Friend leukemia virus integration 1 90.86(n)
    96.24(a)
    315532  NM_001017381.1  NP_001017381.1 
    mouse
    (Mus musculus)
    Fli11, 5 9 (16.00 cM)5
    Friend leukemia integration 11, 5 90.93(n)1
    96.68(a)1
    142471  NM_008026.31  NP_032052.11 
     AF2758805  AK0366555  (see all 13)
    About this table        Species with no ortholog for FLI1

    ENSEMBL Gene Tree for FLI1
    (Paralogs according to 1HomoloGene
    and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
    About This Section

    Paralogs for FLI1 gene
    FEV2  ERG2  ETV22  

    (According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
    About This Section


    10/843 NCBI SNPs in FLI1 are shown (see all 843 )
    (Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 375)
    ABGenomic DataTranscription DataAllele Frequencies
    SNP IDValidChr 11 posSequenceRecsAA
    Chg
    TypeMoreRecsAllele
    freq
    PopTotal
    sample
    More
    ------------
    rs11480661,2
    A,C,F,O128187816(-) CAGACC/AAGTCT 1 -- ut313Minor allele frequency- A:0.26NA 142
    rs6951131,2
    A,C,F,H128067308(-) TCCACA/GTGCTT 1 -- ng51 tfbs38Minor allele frequency- G:0.31EA MN EU WA 2280
    rs6826951,2
    A,F,H128187670(-) ACAATG/TAAAAA 1 -- ut315Minor allele frequency- T:0.29MN EU EA WA 580
    rs71306221,2
    F,H128186721(+) TCTAGA/CAATAG 1 -- ut314Minor allele frequency- C:0.04EU EA WA 418
    rs124208231,2
    A,C128068602(+) CCTAGC/TCAACT 1 -- ng510--------
    rs10532611,2
    H128185905(+) CTTCCT/CACCAT 1 H/Y mis15Minor allele frequency- C:0.00MN EU EA WA 590
    rs124208351,2
    C128068623(+) ACCCCA/CCCTAC 1 -- ng510--------
    rs71131911,2
    A,C,F128180502(+) GGAGCT/ATGGGG 1 A/A syn11Minor allele frequency- A:0.18NA 74
    rs351952241,2
    C,F128157103(+) GACCAA/GTCCTC 1 Q/Q syn11Minor allele frequency- G:0.04NA 50
    rs6030211,2
    A,C,F,H,O128149617(-) GGCCTG/ACCTAG 1 -- int15Minor allele frequency- A:0.26EA EU WA 1896
    About this table

    HapMap Linkage Disequilibrium images for FLI1 (up to first 250kb)

    (in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
    About This Section

    OMIM: 193067

    UniProtKB/Swiss-Prot: FLI1_HUMAN, Q01543
  • A chromosomal aberration involving FLI1 is a cause of Ewing sarcoma [MIM:133450].
    Translocation t(11;22)(q24;q12) with EWS
  • 10/32 Novoseek disease relationships for FLI1 gene (see all 32 )

    Disease   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    ewings sarcoma 93.47 74 12522555 (4), 16837212 (3), 8039423 (3), 16865286 (2) (see all 55)
    friend leukemia 82.15 4 15557108 (1), 18785112 (1), 1406633 (1), 8039423 (1)
    peripheral neuroepithelioma 75.77 1 8039423 (1)
    erythroleukemia 70.70 22 2044959 (4), 8502483 (4), 8336942 (2), 14570912 (1) (see all 13)
    vascular neoplasms 65.20 6 15001993 (3), 11474291 (2)
    neuroectodermal tumors 59.33 1 16046110 (1)
    sarcoma synovial 57.70 1 11117787 (1)
    rhabdomyosarcoma 51.81 2 11117787 (1), 16917000 (1)
    leukemia 49.49 19 9178886 (2), 2044959 (2), 10772879 (2), 8336942 (2) (see all 14)
    sarcoma 48.95 2 11474291 (1), 8336942 (1)
    About this table

    1 PharmGKB disease relationship for FLI1 gene
    Disease PharmGKB Relations PubMed IDs for articles supporting these relationships
    Leukemia, Lymphocytic, Acute, L1FA  GN  12086872 12730115
    About this table

    Genetic Association Database: FLI1
    Human Genome Epidemiology Navigator: FLI1 (1 document)
    Tumor Gene Database: FLI1

    (Possibly Related Articles in Doctor's Guide)
    About This Section

      --

    (in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
    About This Section

    10/200 PubMed articles for FLI1 gene (see all 200 ):
    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section

     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)
    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
    About This Section

    Entrez Gene: 2313 HGNC: 3749 AceView: FLI1 Ensembl:ENSG00000151702 euGenes: HUgn2313
    ECgene: FLI1 H-InvDB: FLI1
    (According to HUGE)
    About This Section

      --
    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section

    NameDescription
    ATLAS Chromosomes in Cancer entry for FLI1 Genetics and Cytogenetics in Oncology and Haematology
    (Available from WIS Yeda, Salk, Tufts)
    About This Section

      --
    (Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
    Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
    Enzo Life Sciences, and/or Tocris Bioscience)
    About This Section



    Products for FLI1:
     TaqMan ® Gene Expression Assays
     TaqMan ® Genotyping Assays
      Free SNP selection tool



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