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Aliases for FKBP1A-SDCBP2 Gene

Subcategory (RNA class) for FKBP1A-SDCBP2 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for FKBP1A-SDCBP2 Gene

  • FKBP1A-SDCBP2 Readthrough (NMD Candidate) 2 3

External Ids for FKBP1A-SDCBP2 Gene

Previous GeneCards Identifiers for FKBP1A-SDCBP2 Gene

  • GC20U900632
  • GC20P001308

Summaries for FKBP1A-SDCBP2 Gene

Entrez Gene Summary for FKBP1A-SDCBP2 Gene

  • This locus represents naturally occurring read-through transcription between the neighboring FK506 binding protein 1A, 12kDa and syndecan binding protein (syntenin) 2 genes on chromosome 20. The read-through transcript is a candidate for nonsense-mediated mRNA decay (NMD), and is unlikely to produce a protein product. [provided by RefSeq, Dec 2010]

GeneCards Summary for FKBP1A-SDCBP2 Gene

FKBP1A-SDCBP2 (FKBP1A-SDCBP2 Readthrough (NMD Candidate)) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FKBP1A-SDCBP2 Gene

Genomics for FKBP1A-SDCBP2 Gene

Regulatory Elements for FKBP1A-SDCBP2 Gene

Enhancers for FKBP1A-SDCBP2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20F001394 0.9 Ensembl ENCODE 0.4 -6.1 -6142 8.9 ARID4B SIN3A YY1 FOS ZNF263 JUNB MXD4 TSHZ1 REST TBX21 SDCBP2 FKBP1A NSFL1C FKBP1A-SDCBP2 MIR6869 LOC105372497
GH20F001405 0.4 ENCODE 0.4 -12.9 -12866 1.2 GLIS1 ZNF701 SPI1 SDCBP2 ACTG1P3 ENSG00000229728 TBC1D20 NSFL1C LOC105372497 FKBP1A FKBP1A-SDCBP2 MIR6869
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around FKBP1A-SDCBP2 on UCSC Golden Path with GeneCards custom track

Promoters for FKBP1A-SDCBP2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000396442 572 2401 MLX WRNIP1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 SLC30A9 ZNF263 SP3

Genomic Location for FKBP1A-SDCBP2 Gene

Chromosome:
20
Start:
1,309,909 bp from pter
End:
1,393,172 bp from pter
Size:
83,264 bases
Orientation:
Minus strand

Genomic View for FKBP1A-SDCBP2 Gene

Genes around FKBP1A-SDCBP2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FKBP1A-SDCBP2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FKBP1A-SDCBP2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FKBP1A-SDCBP2 Gene

Proteins for FKBP1A-SDCBP2 Gene

Post-translational modifications for FKBP1A-SDCBP2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FKBP1A-SDCBP2 Gene

Domains & Families for FKBP1A-SDCBP2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FKBP1A-SDCBP2 Gene

Function for FKBP1A-SDCBP2 Gene

Phenotypes for FKBP1A-SDCBP2 Gene

genes like me logo Genes that share phenotypes with FKBP1A-SDCBP2: view

Animal Model Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FKBP1A-SDCBP2 Gene

Localization for FKBP1A-SDCBP2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FKBP1A-SDCBP2 Gene

Pathways & Interactions for FKBP1A-SDCBP2 Gene

SuperPathways for FKBP1A-SDCBP2 Gene

No Data Available

Interacting Proteins for FKBP1A-SDCBP2 Gene

Gene Ontology (GO) - Biological Process for FKBP1A-SDCBP2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FKBP1A-SDCBP2 Gene

Transcripts for FKBP1A-SDCBP2 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for FKBP1A-SDCBP2 Gene

No ASD Table

Relevant External Links for FKBP1A-SDCBP2 Gene

GeneLoc Exon Structure for
FKBP1A-SDCBP2
ECgene alternative splicing isoforms for
FKBP1A-SDCBP2

No data available for mRNA/cDNA for FKBP1A-SDCBP2 Gene

Expression for FKBP1A-SDCBP2 Gene

mRNA expression in normal human tissues for FKBP1A-SDCBP2 Gene

mRNA expression in normal human tissues for FKBP1A-SDCBP2 Gene
genes like me logo Genes that share expression patterns with FKBP1A-SDCBP2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for FKBP1A-SDCBP2 Gene

Orthologs for FKBP1A-SDCBP2 Gene

No data available for Orthologs and Evolution for FKBP1A-SDCBP2 Gene

Paralogs for FKBP1A-SDCBP2 Gene

No data available for Paralogs for FKBP1A-SDCBP2 Gene

Variants for FKBP1A-SDCBP2 Gene

Sequence variations from dbSNP and Humsavar for FKBP1A-SDCBP2 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs1018575 -- 1,317,753(-) AGCCG(A/G)TGAAA intron-variant
rs1018576 -- 1,317,613(-) ACAAG(C/G)ATGAG intron-variant
rs1018577 -- 1,317,583(-) AGAAC(G/T)GATGG intron-variant
rs1048621 -- 1,312,402(-) CGGCC(C/T)GCAAC nc-transcript-variant, reference, missense
rs1048628 -- 1,310,432(-) CACTG(C/G)AGGGC nc-transcript-variant, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for FKBP1A-SDCBP2 Gene

Variant ID Type Subtype PubMed ID
esv2664030 CNV deletion 23128226
esv3644976 CNV loss 21293372
nsv1057097 CNV gain 25217958
nsv1071671 CNV deletion 25765185
nsv1118074 CNV deletion 24896259
nsv1138912 CNV deletion 24896259
nsv1147992 OTHER inversion 26484159
nsv518295 CNV loss 19592680
nsv522008 CNV gain 19592680
nsv979410 CNV duplication 23825009

Relevant External Links for FKBP1A-SDCBP2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FKBP1A-SDCBP2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FKBP1A-SDCBP2 Gene

Disorders for FKBP1A-SDCBP2 Gene

Relevant External Links for FKBP1A-SDCBP2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FKBP1A-SDCBP2

No disorders were found for FKBP1A-SDCBP2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FKBP1A-SDCBP2 Gene

Publications for FKBP1A-SDCBP2 Gene

  1. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PMID: 20967262) Prakash T. … Taylor T.D. (PLoS ONE 2010) 3 64

Products for FKBP1A-SDCBP2 Gene

Sources for FKBP1A-SDCBP2 Gene

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