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Aliases for FIZ1 Gene

Aliases for FIZ1 Gene

  • FLT3-Interacting Zinc Finger 1 2 3
  • Zinc Finger Protein 798 3 4
  • ZNF798 3 4
  • Flt3-Interacting Zinc Finger Protein 1 3

External Ids for FIZ1 Gene

Previous GeneCards Identifiers for FIZ1 Gene

  • GC19M060795
  • GC19M056102
  • GC19M052413

Summaries for FIZ1 Gene

Entrez Gene Summary for FIZ1 Gene

  • This gene encodes zinc finger protein, which interacts with a receptor tyrosine kinase involved in the regulation of hematopoietic and lymphoid cells. This gene product also interacts with a transcription factor that regulates the expression of rod-specific genes in retina. [provided by RefSeq, Jul 2008]

GeneCards Summary for FIZ1 Gene

FIZ1 (FLT3-Interacting Zinc Finger 1) is a Protein Coding gene. GO annotations related to this gene include protein kinase binding and nucleic acid binding.

UniProtKB/Swiss-Prot for FIZ1 Gene

  • May be a transcriptional repressor of NRL function in photoreceptors. Does not repress CRX-mediated transactivation (By similarity).

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FIZ1 Gene

Genomics for FIZ1 Gene

Regulatory Elements for FIZ1 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for FIZ1 Gene

Start:
55,591,371 bp from pter
End:
55,601,970 bp from pter
Size:
10,600 bases
Orientation:
Minus strand

Genomic View for FIZ1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FIZ1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FIZ1 Gene

Proteins for FIZ1 Gene

  • Protein details for FIZ1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96SL8-FIZ1_HUMAN
    Recommended name:
    Flt3-interacting zinc finger protein 1
    Protein Accession:
    Q96SL8
    Secondary Accessions:
    • A2RU72
    • Q6ZMJ7

    Protein attributes for FIZ1 Gene

    Size:
    496 amino acids
    Molecular mass:
    51996 Da
    Quaternary structure:
    • Interacts with FLT3 cytoplasmic catalytic domain, following receptor stimulation, in a kinase-independent manner. Does not interact with other structurally related receptor tyrosine kinases, including KIT, CSF1R and PDGFR. Interacts with NRL (By similarity).
    SequenceCaution:
    • Sequence=BAD18728.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};

neXtProt entry for FIZ1 Gene

Proteomics data for FIZ1 Gene at MOPED

Post-translational modifications for FIZ1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for FIZ1 Gene

No data available for DME Specific Peptides for FIZ1 Gene

Domains for FIZ1 Gene

Gene Families for FIZ1 Gene

HGNC:
  • ZNF :Zinc fingers, C2H2-type

Protein Domains for FIZ1 Gene

Suggested Antigen Peptide Sequences for FIZ1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q96SL8

UniProtKB/Swiss-Prot:

FIZ1_HUMAN :
  • Q96SL8
Similarity:
  • Contains 11 C2H2-type zinc fingers.
genes like me logo Genes that share domains with FIZ1: view

Function for FIZ1 Gene

Molecular function for FIZ1 Gene

UniProtKB/Swiss-Prot Function: May be a transcriptional repressor of NRL function in photoreceptors. Does not repress CRX-mediated transactivation (By similarity).

Gene Ontology (GO) - Molecular Function for FIZ1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003676 nucleic acid binding IEA --
GO:0005515 protein binding --
GO:0030971 receptor tyrosine kinase binding ISS --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with FIZ1: view

Phenotypes for FIZ1 Gene

GenomeRNAi human phenotypes for FIZ1:
genes like me logo Genes that share phenotypes with FIZ1: view

Animal Model Products

CRISPR Products

miRNA for FIZ1 Gene

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for FIZ1 Gene

Localization for FIZ1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for FIZ1 Gene

Cytoplasm. Nucleus.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for FIZ1 Gene COMPARTMENTS Subcellular localization image for FIZ1 gene
Compartment Confidence
nucleus 4
golgi apparatus 1

Gene Ontology (GO) - Cellular Components for FIZ1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus ISS --
GO:0005737 cytoplasm ISS --
genes like me logo Genes that share ontologies with FIZ1: view

Pathways for FIZ1 Gene

SuperPathways for FIZ1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for FIZ1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001934 positive regulation of protein phosphorylation IEA --
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with FIZ1: view

No data available for Pathways by source for FIZ1 Gene

Transcripts for FIZ1 Gene

Unigene Clusters for FIZ1 Gene

FLT3-interacting zinc finger 1:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for FIZ1

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for FIZ1 Gene

No ASD Table

Relevant External Links for FIZ1 Gene

GeneLoc Exon Structure for
FIZ1
ECgene alternative splicing isoforms for
FIZ1

Expression for FIZ1 Gene

mRNA expression in normal human tissues for FIZ1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for FIZ1 Gene

SOURCE GeneReport for Unigene cluster for FIZ1 Gene Hs.515617

mRNA Expression by UniProt/SwissProt for FIZ1 Gene

Q96SL8-FIZ1_HUMAN
Tissue specificity: Widely expressed.
genes like me logo Genes that share expressions with FIZ1: view

In Situ Assay Products

No data available for mRNA differential expression in normal tissues for FIZ1 Gene

Orthologs for FIZ1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for FIZ1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia FIZ1 35
  • 99.53 (n)
  • 99.8 (a)
FIZ1 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia FIZ1 35
  • 88.26 (n)
  • 89.35 (a)
FIZ1 36
  • 42 (a)
OneToOne
dog
(Canis familiaris)
Mammalia FIZ1 35
  • 88.33 (n)
  • 92.19 (a)
mouse
(Mus musculus)
Mammalia Fiz1 35
  • 80.37 (n)
  • 87.08 (a)
Fiz1 16
Fiz1 36
  • 84 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Fiz1 35
  • 80.08 (n)
  • 86.65 (a)
lizard
(Anolis carolinensis)
Reptilia FIZ1 36
  • 48 (a)
OneToOne
Species with no ortholog for FIZ1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for FIZ1 Gene

ENSEMBL:
Gene Tree for FIZ1 (if available)
TreeFam:
Gene Tree for FIZ1 (if available)

Paralogs for FIZ1 Gene

genes like me logo Genes that share paralogs with FIZ1: view

No data available for Paralogs for FIZ1 Gene

Variants for FIZ1 Gene

Sequence variations from dbSNP and Humsavar for FIZ1 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs310463 -- 55,594,646(-) gatct(C/T)ggctc intron-variant
rs310468 -- 55,591,087(-) TAGCC(A/G)GGTGT downstream-variant-500B
rs2287792 -- 55,593,554(-) CGCCA(A/G)CACCG synonymous-codon, reference
rs7247236 - 55,592,770(+) GGCGG(C/T)CGCCG reference, missense
rs10403432 -- 55,593,158(+) CAGGC(C/T)TGCGC synonymous-codon, reference

Structural Variations from Database of Genomic Variants (DGV) for FIZ1 Gene

Variant ID Type Subtype PubMed ID
nsv912473 CNV Loss 21882294
nsv912486 CNV Loss 21882294
dgv4025n71 CNV Loss 21882294
dgv4026n71 CNV Loss 21882294
nsv828643 CNV Loss 20364138
nsv912499 CNV Loss 21882294
nsv912500 CNV Loss 21882294
nsv912501 CNV Loss 21882294
nsv912502 CNV Loss 21882294

Relevant External Links for FIZ1 Gene

HapMap Linkage Disequilibrium report
FIZ1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FIZ1 Gene

Disorders for FIZ1 Gene

No disorders were found for FIZ1 Gene.

No data available for UniProtKB/Swiss-Prot for FIZ1 Gene

Publications for FIZ1 Gene

  1. Interaction of retinal bZIP transcription factor NRL with Flt3- interacting zinc-finger protein Fiz1: possible role of Fiz1 as a transcriptional repressor. (PMID: 12566383) Mitton K.P. … Swaroop A. (Hum. Mol. Genet. 2003) 2 3 4 23
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. FIZ1 is expressed during photoreceptor maturation, and synergizes with NRL and CRX at rod-specific promoters in vitro. (PMID: 17141759) Mali R.S. … Mitton K.P. (Exp. Eye Res. 2007) 3
  4. Genome-wide association study of chronic periodontitis in a general German population. (PMID: 24024966) Teumer A. … Kocher T. (J. Clin. Periodontol. 2013) 3
  5. Dissection of a novel autocrine signaling pathway via quantitative secretome and interactome mapping. (PMID: 24956037) LariviA"re N. … Trinkle-Mulcahy L. (J. Proteome Res. 2014) 3

Products for FIZ1 Gene

Sources for FIZ1 Gene

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