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Aliases for FIRRE Gene

Subcategory (RNA class) for FIRRE Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FIRRE Gene

  • Firre Intergenic Repeating RNA Element 2 3 5
  • Functional Intergenic Repeating RNA Element 2 3
  • Firre Intergenic RNA 2
  • LINC01200 3

External Ids for FIRRE Gene

Previous GeneCards Identifiers for FIRRE Gene

  • GC0XM130838

Summaries for FIRRE Gene

GeneCards Summary for FIRRE Gene

FIRRE (Firre Intergenic Repeating RNA Element) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FIRRE Gene

Genomics for FIRRE Gene

Regulatory Elements for FIRRE Gene

Enhancers for FIRRE Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around FIRRE on UCSC Golden Path with GeneCards custom track

Promoters for FIRRE Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around FIRRE on UCSC Golden Path with GeneCards custom track

Genomic Location for FIRRE Gene

Chromosome:
X
Start:
131,702,650 bp from pter
End:
131,830,643 bp from pter
Size:
127,994 bases
Orientation:
Minus strand

Genomic View for FIRRE Gene

Genes around FIRRE on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FIRRE Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FIRRE Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FIRRE Gene

Proteins for FIRRE Gene

Post-translational modifications for FIRRE Gene

No Post-translational modifications

No data available for DME Specific Peptides for FIRRE Gene

Domains & Families for FIRRE Gene

Gene Families for FIRRE Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with FIRRE: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FIRRE Gene

Function for FIRRE Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FIRRE Gene

Localization for FIRRE Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FIRRE Gene

Pathways & Interactions for FIRRE Gene

SuperPathways for FIRRE Gene

No Data Available

Interacting Proteins for FIRRE Gene

Gene Ontology (GO) - Biological Process for FIRRE Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FIRRE Gene

Drugs & Compounds for FIRRE Gene

No Compound Related Data Available

Transcripts for FIRRE Gene

mRNA/cDNA for FIRRE Gene

(8) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for FIRRE Gene

No ASD Table

Relevant External Links for FIRRE Gene

GeneLoc Exon Structure for
FIRRE
ECgene alternative splicing isoforms for
FIRRE

Expression for FIRRE Gene

mRNA expression in normal human tissues for FIRRE Gene

mRNA differential expression in normal tissues according to GTEx for FIRRE Gene

This gene is overexpressed in Pancreas (x6.8).
genes like me logo Genes that share expression patterns with FIRRE: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for FIRRE Gene

Orthologs for FIRRE Gene

Evolution for FIRRE Gene

ENSEMBL:
Gene Tree for FIRRE (if available)
TreeFam:
Gene Tree for FIRRE (if available)

No data available for Orthologs for FIRRE Gene

Paralogs for FIRRE Gene

No data available for Paralogs for FIRRE Gene

Variants for FIRRE Gene

Sequence variations from dbSNP and Humsavar for FIRRE Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type
rs747689444 -- 131,716,915(+) TCCTG(C/G)TGCTA intron-variant
rs747723434 -- 131,778,769(+) AAATT(G/T)TTTAA intron-variant
rs747725516 -- 131,767,940(+) TGCCA(C/G)CCAAC intron-variant
rs747726171 -- 131,813,441(+) CCCTC(C/T)TATCT intron-variant
rs747737508 -- 131,828,690(+) GCCAG(G/T)TTCCC intron-variant

Relevant External Links for FIRRE Gene

HapMap Linkage Disequilibrium report
FIRRE

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for FIRRE Gene

Disorders for FIRRE Gene

Relevant External Links for FIRRE

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FIRRE

No disorders were found for FIRRE Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FIRRE Gene

Publications for FIRRE Gene

  1. Topological organization of multichromosomal regions by the long intergenic noncoding RNA Firre. (PMID: 24463464) Hacisuleyman E. … Rinn J.L. (Nat. Struct. Mol. Biol. 2014) 2 3 67
  2. The lncRNA Firre anchors the inactive X chromosome to the nucleolus by binding CTCF and maintains H3K27me3 methylation. (PMID: 25887447) Yang F. … Disteche C.M. (Genome Biol. 2015) 3
  3. Regulatory networks of non-coding RNAs in brown/beige adipogenesis. (PMID: 26283634) Xu S. … Sun L. (Biosci. Rep. 2015) 3
  4. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A. … Hentze M.W. (Cell 2012) 3
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3

Products for FIRRE Gene

Sources for FIRRE Gene

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