Free for academic non-profit institutions. Other users need a Commercial license

Aliases for FIRRE Gene

Subcategory (RNA class) for FIRRE Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for FIRRE Gene

  • Firre Intergenic Repeating RNA Element 2 3
  • Functional Intergenic Repeating RNA Element 2 3
  • Firre Intergenic RNA 2
  • LINC01200 3

External Ids for FIRRE Gene

Previous GeneCards Identifiers for FIRRE Gene

  • GC0XM130838

Summaries for FIRRE Gene

GeneCards Summary for FIRRE Gene

FIRRE (Firre Intergenic Repeating RNA Element) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FIRRE Gene

Genomics for FIRRE Gene

Genomic Location for FIRRE Gene

131,702,650 bp from pter
131,830,643 bp from pter
127,994 bases
Minus strand

Genomic View for FIRRE Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FIRRE Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FIRRE Gene

No data available for Regulatory Elements for FIRRE Gene

Proteins for FIRRE Gene

Post-translational modifications for FIRRE Gene

No Post-translational modifications

No data available for DME Specific Peptides for FIRRE Gene

Domains & Families for FIRRE Gene

Gene Families for FIRRE Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with FIRRE: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FIRRE Gene

Function for FIRRE Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FIRRE Gene

Localization for FIRRE Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FIRRE Gene

Pathways & Interactions for FIRRE Gene

SuperPathways for FIRRE Gene

No Data Available

Interacting Proteins for FIRRE Gene

Gene Ontology (GO) - Biological Process for FIRRE Gene


No data available for Pathways by source and SIGNOR curated interactions for FIRRE Gene

Drugs & Compounds for FIRRE Gene

No Compound Related Data Available

Transcripts for FIRRE Gene

mRNA/cDNA for FIRRE Gene

(8) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for FIRRE Gene

No ASD Table

Relevant External Links for FIRRE Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for FIRRE Gene

mRNA expression in normal human tissues for FIRRE Gene

mRNA differential expression in normal tissues according to GTEx for FIRRE Gene

This gene is overexpressed in Pancreas (x6.8).
genes like me logo Genes that share expression patterns with FIRRE: view

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for FIRRE Gene

Orthologs for FIRRE Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for FIRRE Gene

Organism Taxonomy Gene Similarity Type Details
(Mus musculus)
Mammalia 6720401G13Rik 16
Species with no ortholog for FIRRE:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for FIRRE Gene

Gene Tree for FIRRE (if available)
Gene Tree for FIRRE (if available)

Paralogs for FIRRE Gene

No data available for Paralogs for FIRRE Gene

Variants for FIRRE Gene

Sequence variations from dbSNP and Humsavar for FIRRE Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type MAF
rs10382 -- 131,803,458(+) TTGGT(G/T)AGGAT intron-variant
rs724057 -- 131,782,327(-) TTTGA(C/G)TCGAC intron-variant
rs766098 -- 131,804,698(-) TTGTC(A/G)TTTAT intron-variant
rs872840 -- 131,741,023(-) AAAAT(A/G)AGGCC intron-variant
rs1988546 -- 131,764,942(+) aattt(A/C)ccctc intron-variant

Relevant External Links for FIRRE Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for FIRRE Gene

Disorders for FIRRE Gene

Relevant External Links for FIRRE

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
genes like me logo Genes that share disorders with FIRRE: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FIRRE Gene

Publications for FIRRE Gene

  1. Topological organization of multichromosomal regions by the long intergenic noncoding RNA Firre. (PMID: 24463464) Hacisuleyman E. … Rinn J.L. (Nat. Struct. Mol. Biol. 2014) 2 67
  2. The lncRNA Firre anchors the inactive X chromosome to the nucleolus by binding CTCF and maintains H3K27me3 methylation. (PMID: 25887447) Yang F. … Disteche C.M. (Genome Biol. 2015) 67
  3. Regulatory networks of non-coding RNAs in brown/beige adipogenesis. (PMID: 26283634) Xu S. … Sun L. (Biosci. Rep. 2015) 67
  4. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A. … Hentze M.W. (Cell 2012) 67
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 67

Products for FIRRE Gene

Sources for FIRRE Gene

Back to Top