FIGLA Gene
protein-coding GIFtS : 44
GCID: GC02 M071004
folliculogenesis specific basic helix-loop-helix
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Aliasesfor FIGLA gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Folliculogenesis Specific Basic Helix-Loop-Helix 1 2 BHLHC82 3 BHLHc81 POF62 5 Class C Basic Helix-Loop-Helix Protein 82 3 FIGALPHA2 Folliculogenesis-Specific Basic Helix-Loop-Helix Protein2 3 Factor In The Germline Alpha2 Transcription Factor FIGa2 3 FIGalpha3
Export aliases for FIGLA gene to outside databases Previous GC identifers: GC02M070962 GC02U900441 GC02M070916 GC02M070847 GC02M070741
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Summariesfor FIGLA gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for FIGLA : This gene encodes a protein that functions in postnatal oocyte-specific gene expression. The protein is a basic helix-loop-helix transcription factor that regulates multiple oocyte-specific genes, including genes involved in folliculogenesis and those that encode the zona pellucida. Mutations in this gene cause premature ovarian failure type 6. (provided by RefSeq, Sep 2009) UniProtKB/Swiss-Prot: FIGLA_HUMAN, Q6QHK4 Function : Germline specific transcription factor implicated in postnatal oocyte-specific gene expression. Plays a keyregulatory role in the expression of multiple oocyte-specific genes, including those that initiate folliculogenesis and those that encode the zona pellucida (ZP1, ZP2 and ZP3) required for fertilization and early embryonic survival. Essential for oocytes to survive and form primordial follicles. The persistence of FIGLA in adult females suggests that it may regulate additional pathways that are essential for normal ovarian development. Binds to the E-box (5'-CANNTG-3') of the ZPs (ZP1, ZP2, ZP3) promoters Gene Wiki entry for FIGLA
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Genomic Viewsfor FIGLA gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000002.11 NC_018913.1 NT_022184.15 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the FIGLA gene promoter: AML1a NF-kappaB c-Ets-1 PPAR-gamma1 FOXJ2 (long isoform) PPAR-gamma2 FOXJ2 NF-kappaB1 Other transcription factors Search SABiosciences Chromatin IP Primers for FIGLA Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat FIGLA
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 2p13.3 Ensembl cytogenetic band: 2p13.3 HGNC cytogenetic band: 2p13.3 FIGLA Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 2 GeneLoc Exon Structure
GeneLoc location for GC02M071004: view genomic region
(about GC identifiers )
Start:
71,004,442 bp from pter
End:
71,017,775 bp from pter
Size:
13,334 bases
Orientation:
minus strand
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Proteinsfor FIGLA gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: FIGLA_HUMAN, Q6QHK4 (See
protein sequence )Recommended Name: Factor in the germline alpha Size : 219 amino acids; 24123 Da
Subunit : Heterodimer with TCF3/isoform E12
Subcellular location : Nucleus (Probable)
Developmental stage : Expressed in ovarian follicles (from the primordial through to the secondary stage), in matureoocytes, and less frequently in preimplantation embryos Explore the universe of human proteins at neXtProt for FIGLA: NX_Q6QHK4 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q6QHK4 FIGLA Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins: NP_001004311.2 ENSEMBL proteins: ENSP00000333097 Human Recombinant Protein Products: Gene Ontology (GO): 1 cellular component term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0005667 transcription factor complex
IDA 15044608
FIGLA for ontologies About GeneDecksing FIGLA Antibody Products: Assay Products for FIGLA:
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Protein
Domains / Familiesfor FIGLA gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
FIGLA for domains About GeneDecksing 1 InterPro domain/family :
Graphical View of Domain Structure for InterPro Entry Q6QHK4 ProtoNet protein and cluster: Q6QHK4
1 Blocks protein family : IPB001092 Basic helix-loop-helix dimerization domain bHLH UniProtKB/Swiss-Prot: FIGLA_HUMAN, Q6QHK4 Similarity : Contains 1 bHLH (basic helix-loop-helix) domain
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Functionfor FIGLA gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: FIGLA_HUMAN, Q6QHK4 Function : Germline specific transcription factor implicated in postnatal oocyte-specific gene expression. Plays a keyregulatory role in the expression of multiple oocyte-specific genes, including those that initiate folliculogenesis and those that encode the zona pellucida (ZP1, ZP2 and ZP3) required for fertilization and early embryonic survival. Essential for oocytes to survive and form primordial follicles. The persistence of FIGLA in adult females suggests that it may regulate additional pathways that are essential for normal ovarian development. Binds to the E-box (5'-CANNTG-3') of the ZPs (ZP1, ZP2, ZP3) promoters
Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for FIGLA (see all 2 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for FIGLAOriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: FIGLA (NM_001004311 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for FIGLA Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat FIGLA
Gene Ontology (GO): 3 molecular function terms (GO ID links to tree view) : About this table
FIGLA for ontologies About GeneDecksing Animal Models: Mouse knock-out Figla tm1Dean for FIGLA 2 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Figla) :
FIGLA for phenotypes About GeneDecksing
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Pathways & Interactionsfor FIGLA gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for FIGLA Gene Ontology (GO): 4 biological process terms (GO ID links to tree view) : About this table
FIGLA for ontologies About GeneDecksing
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Drugs & Compoundsfor FIGLA gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for FIGLA Search CenterWatch for drugs/clinical trials and news about FIGLA
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Transcriptsfor FIGLA gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for FIGLA gene: NM_001004311.3 Unigene Cluster for FIGLA:
Folliculogenesis specific basic helix-loop-helix Hs.407636 Unigene Representative Sequence: AY541030 1 Ensembl transcript including schematic representation, and UCSC links where relevant : ENST00000332372 (uc002she.1 ) Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for FIGLA (see all 2 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for FIGLAOriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: FIGLA (NM_001004311 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for FIGLA Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat FIGLA
Additional cDNA sequence: AY541030.1 BC039536.1
1 DOTS entry : DT.97771949
4 AceView cDNA sequences :
BC039536 AY541030 NM_001004311 BM560361 GeneLoc Exon Structure
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Expression for FIGLA gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section FIGLA expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: GACCCCGCGC
About this image FIGLA expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table 2 LifeMap In Vivo Development Anatomical Compartments/Cells Tissue Anatomical Compartment
Cell Category (developmental path) Ovary Antral Follicle Secondary Oocyte Female Gametocytes, Germ Cells Ovary Ovigerous Cord XX Germ Cells Female Gametocytes, Germ Cells Expression: Positive Negative
Selective markerExperimental details:
Curated
Microarrays
In-situ hybridization
See FIGLA Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for FIGLA SOURCE GeneReport for Unigene cluster: Hs.407636 UniProtKB/Swiss-Prot: FIGLA_HUMAN, Q6QHK4 Tissue specificity : Germ cells. Expressed in the fetal ovary, but not by a range of other tissues. Expression increasesacross mid-gestation, rising some 40-fold by the time of primordial follicle formation SABiosciences Custom PCR Arrays for FIGLA Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for FIGLABrowse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat FIGLA QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat FIGLA QIAGEN QuantiFast Probe-based Assays in human , mouse , rat FIGLA
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Orthologsfor FIGLA gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of chordates.
Orthologs for FIGLA gene from 2/7 species (see all 7 ) About this table
ENSEMBL Gene Tree for FIGLA (if available)TreeFam Gene Tree for FIGLA (if available)
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Paralogsfor FIGLA gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for FIGLA gene
FIGLA for paralogs About GeneDecksing 1 Pseudogenes.org Pseudogene for FIGLA PGOHUM00000234254
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Genomic Variantsfor FIGLA gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 2 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for FIGLA (71004442 - 71017775 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for FIGLA: -- Human Gene Mutation Database (HGMD) : FIGLA SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing FIGLA
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Disorders
/ Diseasesfor FIGLA gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
FIGLA for disorders About GeneDecksing OMIM gene information: 608697 OMIM disorders : 612310 UniProtKB/Swiss-Prot: FIGLA_HUMAN, Q6QHK4
Defects in FIGLA are the cause of premature ovarian failure type 6 (POF6) [MIM:612310]. An ovarian disorder defined as the cessation of ovarian function under the age of 40 years. It is characterized by oligomenorrhea or amenorrhea, in the presence of elevated levels of serum gonadotropins and low estradiol 3 diseases for FIGLA : About MalaCards premature ovarian failure premature ovarian failure 6 amenorrhea 2 diseases from the University of Copenhagen DISEASES database for FIGLA :Premature ovarian failure Infertility Export disorders for FIGLA gene to outside databases
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Publicationsfor FIGLA gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for FIGLA gene, integrated from 9 sources (see all 13 ): (articles sorted by number of sources associating them with FIGLA) Utopia : connect your pdf to the dynamic world of online information
Isolation, characterization and expression of the human Factor In the Germline alpha (FIGLA) gene in ovarian follicles and oocytes. (PubMed id 12468641) 1 , 2 , 3, 9 Huntriss J.... Picton H.M. (2002) Increased expression of the FIGLA transcription factor is associated with primordial follicle formation in the human fetal ovary. (PubMed id 15044608) 1 , 2 , 9 Bayne R.A.L.... Anderson R.A. (2004) Transcription factor FIGLA is mutated in patients with premature ovarian failure. (PubMed id 18499083) 1 , 2 Zhao H....Rajkovic A. (2008) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Zona pellucida components are present in human fetal ovary before follicle formation. (PubMed id 18502569) 1 , 9 Tormala R.M....Vaskivuo T.E. (2008) Premature ovarian failure and gene polymorphisms. (PubMed id 19610175) 1 van Dooren M.F....Oldenburg R.A. (2009) Gene expression analysis of human fetal ovarian primo rdial follicle formation. (PubMed id 19258411) 1 Fowler P.A....O'Shaughnessy P.J. (2009) Candidate genes for premature ovarian failure. (PubMed id 17305537) 1 Suzumori N....Rajkovic A. (2007) Transcriptional regulation of early oogenesis: in sea rch of masters. (PubMed id 16143663) 1 Pangas S.A. and Rajkovic A. (2006) Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PubMed id 15815621) 2 Hillier L.W....Wilson R.K. (2005)
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External Searches for FIGLA gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing FIGLA gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing FIGLA gene
(According to HUGE )
About This Section --
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Specialized Databases showing FIGLA gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for FIGLA Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for FIGLA gene: Search GeneIP for patents involving FIGLA GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor FIGLA gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies OriGene shRNA RFP for FIGLA OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for FIGLA OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for FIGLA Browse OriGene Protein Over-expression Lysates Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for FIGLA Browse 3'-UTR reporter clones for miRNA target validation OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for FIGLA OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for FIGLA Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs OriGene Purified Protein for FIGLA OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for FIGLA OriGene Custom Protein Services for FIGLA OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat FIGLA QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing FIGLA QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat FIGLA QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat FIGLA QIAGEN QuantiFast Probe-based Assays in human , mouse , rat FIGLA QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat FIGLA
Search Tocris compounds for FIGLA
Search ThermoFisher Antibodies for FIGLA
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat FIGLA
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Aliases for FIGLA
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