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Aliases for FICD Gene

Aliases for FICD Gene

  • FIC Domain Containing 2 3 5
  • Huntingtin-Interacting Protein 13 3 4
  • Huntingtin-Interacting Protein E 3 4
  • FIC Domain-Containing Protein 3 4
  • Huntingtin Yeast Partner E 3 4
  • AMPylator FICD 3 4
  • HIP-13 3 4
  • HIP13 3 4
  • HYPE 3 4
  • Fic S-Phase Protein Cell Division Homolog (E. Coli) 2
  • Adenosine Monophosphate-Protein Transferase FICD 3
  • Fic S-Phase Protein Cell Division Homolog 3
  • Huntingtin Interacting Protein 13 2
  • Huntingtin Interacting Protein E 3
  • Huntingtin Interactor Protein E 3
  • EC 2.7.7.n1 4
  • UNQ3041 3

External Ids for FICD Gene

Previous GeneCards Identifiers for FICD Gene

  • GC12P107433
  • GC12P108909
  • GC12P105973

Summaries for FICD Gene

GeneCards Summary for FICD Gene

FICD (FIC Domain Containing) is a Protein Coding gene. Diseases associated with FICD include Depersonalization Disorder and Extragonadal Germ Cell Cancer. GO annotations related to this gene include protein adenylyltransferase activity.

UniProtKB/Swiss-Prot for FICD Gene

  • Adenylyltransferase that mediates the addition of adenosine 5-monophosphate (AMP) to specific residues of target proteins. Able to inactivate Rho GTPases in vitro by adding AMP to RhoA, Rac and Cdc42. It is however unclear whether it inactivates GTPases in vivo and physiological substrates probably remain to be identified.

Additional gene information for FICD Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FICD Gene

Genomics for FICD Gene

Regulatory Elements for FICD Gene

Enhancers for FICD Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12H108559 1.7 Ensembl ENCODE dbSUPER 21.3 +50.4 50390 12 HDGF PKNOX1 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9 PWP1 FICD ISCU SART3 UBE3B PRDM4 TMEM119
GH12H108540 1 Ensembl ENCODE 31.9 +26.3 26260 2 HDGF SMARCA5 TRIM22 BMI1 ELF1 DPF2 ZNF217 JUND TARDBP IKZF1 FICD ISCU LINC01498 GC12M108547 PIR52944
GH12H108626 2 FANTOM5 Ensembl ENCODE dbSUPER 15.5 +123.7 123679 24 HDGF PKNOX1 ARNT FEZF1 ZNF766 CBX5 ZNF207 ZNF143 ZNF548 FOS PWP1 SART3 PRDM4 UBE3B RNU4-32P CORO1C FICD LOC101929162 SELPLG TMEM119
GH12H108514 1.1 ENCODE 21 +0.5 517 2 HDGF PKNOX1 ARID4B SIN3A ZNF2 YY1 ZNF143 FOS SP3 CEBPZ PWP1 FICD SART3 KCTD10 LOC101929162 ALKBH2 UBE3B ISCU PIR52944
GH12H108301 1.7 FANTOM5 Ensembl ENCODE dbSUPER 10.3 -209.6 -209559 7 ELF3 RAD21 EGR1 FOS RCOR1 RUNX3 EGR2 ELF1 NR2F2 ZNF217 CMKLR1 SART3 LINC01498 FICD ENSG00000257398 BTBD11 UNG CORO1C SELPLG GC12M108289
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FICD on UCSC Golden Path with GeneCards custom track

Promoters for FICD Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000057043 115 1401 HDGF PKNOX1 ARID4B SIN3A ZNF2 YY1 ZNF143 FOS SP3 CEBPZ

Genomic Location for FICD Gene

Chromosome:
12
Start:
108,515,185 bp from pter
End:
108,525,837 bp from pter
Size:
10,653 bases
Orientation:
Plus strand

Genomic View for FICD Gene

Genes around FICD on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FICD Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FICD Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FICD Gene

Proteins for FICD Gene

  • Protein details for FICD Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BVA6-FICD_HUMAN
    Recommended name:
    Adenosine monophosphate-protein transferase FICD
    Protein Accession:
    Q9BVA6
    Secondary Accessions:
    • O75406

    Protein attributes for FICD Gene

    Size:
    458 amino acids
    Molecular mass:
    51778 Da
    Quaternary structure:
    • Interacts with HD.

    Three dimensional structures from OCA and Proteopedia for FICD Gene

neXtProt entry for FICD Gene

Post-translational modifications for FICD Gene

  • Glycosylation at posLast=168168
  • Modification sites at PhosphoSitePlus

Other Protein References for FICD Gene

No data available for DME Specific Peptides for FICD Gene

Domains & Families for FICD Gene

Gene Families for FICD Gene

Human Protein Atlas (HPA):
  • Enzymes
  • Predicted intracellular proteins
  • Predicted secreted proteins

Suggested Antigen Peptide Sequences for FICD Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9BVA6

UniProtKB/Swiss-Prot:

FICD_HUMAN :
  • The fido domain mediates the adenylyltransferase activity.
  • Belongs to the fic family.
Domain:
  • The fido domain mediates the adenylyltransferase activity.
Family:
  • Belongs to the fic family.
genes like me logo Genes that share domains with FICD: view

Function for FICD Gene

Molecular function for FICD Gene

UniProtKB/Swiss-Prot CatalyticActivity:
ATP + [protein] = diphosphate + [protein]-AMP.
UniProtKB/Swiss-Prot EnzymeRegulation:
Adenylyltransferase activity is inhibited by the inhibitory helix present at the N-terminus: Glu-234 binds ATP and competes with ATP-binding at Arg-374, thereby preventing adenylyltransferase activity. Activation dissociates ATP-binding from Glu-234, allowing ordered binding of the entire ATP moiety with the alpha-phosphate in an orientation that is productive for accepting an incoming target hydroxyl side chain.
UniProtKB/Swiss-Prot Function:
Adenylyltransferase that mediates the addition of adenosine 5-monophosphate (AMP) to specific residues of target proteins. Able to inactivate Rho GTPases in vitro by adding AMP to RhoA, Rac and Cdc42. It is however unclear whether it inactivates GTPases in vivo and physiological substrates probably remain to be identified.

Enzyme Numbers (IUBMB) for FICD Gene

Phenotypes From GWAS Catalog for FICD Gene

Gene Ontology (GO) - Molecular Function for FICD Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005524 ATP binding IEA --
GO:0016740 transferase activity IEA --
GO:0016779 nucleotidyltransferase activity IEA --
GO:0070733 protein adenylyltransferase activity IDA 19362538
genes like me logo Genes that share ontologies with FICD: view
genes like me logo Genes that share phenotypes with FICD: view

Animal Model Products

CRISPR Products

miRNA for FICD Gene

miRTarBase miRNAs that target FICD

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for FICD
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for FICD Gene

Localization for FICD Gene

Subcellular locations from UniProtKB/Swiss-Prot for FICD Gene

Membrane; Single-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for FICD gene
Compartment Confidence
endoplasmic reticulum 2
extracellular 1
cytoskeleton 1
mitochondrion 1
peroxisome 1
golgi apparatus 1

Subcellular locations from the

Human Protein Atlas (HPA)

Gene Ontology (GO) - Cellular Components for FICD Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with FICD: view

Pathways & Interactions for FICD Gene

No Data Available

Gene Ontology (GO) - Biological Process for FICD Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0018117 protein adenylylation IDA 22266942
GO:0034260 negative regulation of GTPase activity TAS 19362538
genes like me logo Genes that share ontologies with FICD: view

No data available for Pathways by source and SIGNOR curated interactions for FICD Gene

Drugs & Compounds for FICD Gene

(1) Drugs for FICD Gene - From: HMDB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
ATP Nutra Agonist 0

(1) Additional Compounds for FICD Gene - From: HMDB

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
pyrophosphate
  • (4-)Diphosphoric acid ion
  • (P2O74-)Diphosphate
  • Diphosphate
  • Diphosphoric acid
  • PPi
14000-31-8
genes like me logo Genes that share compounds with FICD: view

Transcripts for FICD Gene

Unigene Clusters for FICD Gene

FIC domain containing:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for FICD
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for FICD Gene

ExUns: 1a · 1b · 1c ^ 2a · 2b ^ 3a · 3b · 3c
SP1: - -
SP2: -
SP3:

Relevant External Links for FICD Gene

GeneLoc Exon Structure for
FICD
ECgene alternative splicing isoforms for
FICD

Expression for FICD Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FICD Gene

Protein differential expression in normal tissues from HIPED for FICD Gene

This gene is overexpressed in Pancreas (43.3) and Platelet (20.6).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for FICD Gene



Protein tissue co-expression partners for FICD Gene

NURSA nuclear receptor signaling pathways regulating expression of FICD Gene:

FICD

SOURCE GeneReport for Unigene cluster for FICD Gene:

Hs.661891

mRNA Expression by UniProt/SwissProt for FICD Gene:

Q9BVA6-FICD_HUMAN
Tissue specificity: Ubiquitous.

Evidence on tissue expression from TISSUES for FICD Gene

  • Nervous system(4.3)
genes like me logo Genes that share expression patterns with FICD: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and Phenotype-based relationships between genes and organs from Gene ORGANizer for FICD Gene

Orthologs for FICD Gene

This gene was present in the common ancestor of animals.

Orthologs for FICD Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia FICD 33 34
  • 99.13 (n)
dog
(Canis familiaris)
Mammalia FICD 33 34
  • 88.72 (n)
cow
(Bos Taurus)
Mammalia FICD 33 34
  • 88.06 (n)
mouse
(Mus musculus)
Mammalia Ficd 33 16 34
  • 86.61 (n)
rat
(Rattus norvegicus)
Mammalia Ficd 33
  • 85.66 (n)
oppossum
(Monodelphis domestica)
Mammalia FICD 34
  • 82 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia FICD 34
  • 72 (a)
OneToOne
chicken
(Gallus gallus)
Aves FICD 33 34
  • 74.93 (n)
lizard
(Anolis carolinensis)
Reptilia FICD 34
  • 76 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia ficd 33
  • 67.72 (n)
zebrafish
(Danio rerio)
Actinopterygii ficd 33 34
  • 68.14 (n)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP009578 33
  • 58.89 (n)
fruit fly
(Drosophila melanogaster)
Insecta Fic 33
  • 57.39 (n)
l(2)k11101 34
  • 42 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea fic-1 33 34
  • 46.88 (n)
sea squirt
(Ciona savignyi)
Ascidiacea -- 34
  • 52 (a)
OneToOne
Species where no ortholog for FICD was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for FICD Gene

ENSEMBL:
Gene Tree for FICD (if available)
TreeFam:
Gene Tree for FICD (if available)

Paralogs for FICD Gene

No data available for Paralogs for FICD Gene

Variants for FICD Gene

Sequence variations from dbSNP and Humsavar for FICD Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1000962338 -- 108,518,781(+) ATCTA(-/CCAC)CCACA reference, frameshift-variant
rs1001260224 -- 108,514,346(+) CTAAA(A/C)ATACA upstream-variant-2KB
rs1001684486 -- 108,517,802(+) GATGC(C/T)TGTAG intron-variant
rs1001714004 -- 108,517,505(+) AGCTG(C/G)GACCC intron-variant
rs1002356128 -- 108,514,149(+) GCTTA(A/C)GGTCA upstream-variant-2KB

Variation tolerance for FICD Gene

Residual Variation Intolerance Score: 20.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.86; 34.85% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for FICD Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FICD

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for FICD Gene

Disorders for FICD Gene

MalaCards: The human disease database

(2) MalaCards diseases for FICD Gene - From: DISEASES

Disorder Aliases PubMed IDs
depersonalization disorder
  • neurotic derealization
extragonadal germ cell cancer
  • extragonadal germ cell malignant tumor
- elite association - COSMIC cancer census association via MalaCards
Search FICD in MalaCards View complete list of genes associated with diseases

Relevant External Links for FICD

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FICD
genes like me logo Genes that share disorders with FICD: view

No data available for UniProtKB/Swiss-Prot and Genatlas for FICD Gene

Publications for FICD Gene

  1. The fic domain: regulation of cell signaling by adenylylation. (PMID: 19362538) Worby CA … Dixon JE (Molecular cell 2009) 3 4 22 60
  2. Huntingtin interacts with a family of WW domain proteins. (PMID: 9700202) Faber PW … MacDonald ME (Human molecular genetics 1998) 2 3 4 60
  3. Adenylylation control by intra- or intermolecular active-site obstruction in Fic proteins. (PMID: 22266942) Engel P … Dehio C (Nature 2012) 3 4 60
  4. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PMID: 12975309) Clark HF … Gray A (Genome research 2003) 3 4 60
  5. Global Profiling of Huntingtin-associated protein E (HYPE)-Mediated AMPylation through a Chemical Proteomic Approach. (PMID: 26604261) Broncel M … Tate EW (Molecular & cellular proteomics : MCP 2016) 3 60

Products for FICD Gene

Sources for FICD Gene

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