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Aliases for FIBIN Gene

Aliases for FIBIN Gene

  • Fin Bud Initiation Factor Homolog (Zebrafish) 2 3 5

External Ids for FIBIN Gene

Previous GeneCards Identifiers for FIBIN Gene

  • GC11P026713

Summaries for FIBIN Gene

GeneCards Summary for FIBIN Gene

FIBIN (Fin Bud Initiation Factor Homolog (Zebrafish)) is a Protein Coding gene. Diseases associated with FIBIN include Wilson-Turner Syndrome.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FIBIN Gene

Genomics for FIBIN Gene

Regulatory Elements for FIBIN Gene

Enhancers for FIBIN Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11G026944 1.1 FANTOM5 Ensembl ENCODE 10.8 -47.3 -47298 4.0 JUND ATF3 BHLHE40 SIN3A FOS CEBPG MAFK NR2F2 FIBIN GC11P026950 PIR32216 PIR54616
GH11G027054 1 ENCODE 10.6 +61.4 61351 1.3 PKNOX1 FOXA2 ATF1 MLX ARID4B SIN3A FEZF1 ZNF48 YY1 TCF12 FIBIN BBOX1 GC11P027066 GC11P027064 PIR47255
GH11G026949 0.6 ENCODE 11.2 -43.5 -43513 1.2 MAX REST RAD21 YY1 JUND ATF3 HNF4A FOS FIBIN GC11P026950 PIR32216 PIR40698
GH11G026929 0.5 ENCODE 11.2 -62.9 -62923 2.5 NFIC NFIB RAD21 FIBIN GC11M026911 PIR54616
GH11G026951 0.4 ENCODE 11.2 -42.3 -42322 0.7 RAD21 FIBIN GC11P026950 PIR32216 PIR40698
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FIBIN on UCSC Golden Path with GeneCards custom track

Promoters for FIBIN Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000038063 920 2399 CTCF MAZ ZNF266 ZNF394 RBBP5 ZIC2 RAD21 ZBTB48 ZNF600 ZBTB20

Genomic Location for FIBIN Gene

Chromosome:
11
Start:
26,994,081 bp from pter
End:
26,997,087 bp from pter
Size:
3,007 bases
Orientation:
Plus strand

Genomic View for FIBIN Gene

Genes around FIBIN on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FIBIN Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FIBIN Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FIBIN Gene

Proteins for FIBIN Gene

  • Protein details for FIBIN Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8TAL6-FIBIN_HUMAN
    Recommended name:
    Fin bud initiation factor homolog
    Protein Accession:
    Q8TAL6

    Protein attributes for FIBIN Gene

    Size:
    211 amino acids
    Molecular mass:
    24273 Da
    Quaternary structure:
    • Homodimer; disulfide-linked. Seems to also exist as monomers.

neXtProt entry for FIBIN Gene

Post-translational modifications for FIBIN Gene

  • Glycosylation at Asn30
  • Modification sites at PhosphoSitePlus

Other Protein References for FIBIN Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for FIBIN Gene

Domains & Families for FIBIN Gene

Protein Domains for FIBIN Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for FIBIN Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8TAL6

UniProtKB/Swiss-Prot:

FIBIN_HUMAN :
  • Belongs to the FIBIN family.
Family:
  • Belongs to the FIBIN family.
genes like me logo Genes that share domains with FIBIN: view

No data available for Gene Families for FIBIN Gene

Function for FIBIN Gene

Phenotypes for FIBIN Gene

genes like me logo Genes that share phenotypes with FIBIN: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for FIBIN Gene

Localization for FIBIN Gene

Subcellular locations from UniProtKB/Swiss-Prot for FIBIN Gene

Secreted. Golgi apparatus. Endoplasmic reticulum.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for FIBIN gene
Compartment Confidence
extracellular 5
endoplasmic reticulum 4
golgi apparatus 3

Gene Ontology (GO) - Cellular Components for FIBIN Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region IEA --
GO:0005783 endoplasmic reticulum IEA --
GO:0005794 Golgi apparatus IEA --
genes like me logo Genes that share ontologies with FIBIN: view

Pathways & Interactions for FIBIN Gene

SuperPathways for FIBIN Gene

No Data Available

Interacting Proteins for FIBIN Gene

Gene Ontology (GO) - Biological Process for FIBIN Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FIBIN Gene

Transcripts for FIBIN Gene

mRNA/cDNA for FIBIN Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(114) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FIBIN Gene

Fin bud initiation factor homolog (zebrafish):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FIBIN Gene

No ASD Table

Relevant External Links for FIBIN Gene

GeneLoc Exon Structure for
FIBIN
ECgene alternative splicing isoforms for
FIBIN

Expression for FIBIN Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FIBIN Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for FIBIN Gene

This gene is overexpressed in Artery - Aorta (x7.7) and Nerve - Tibial (x5.7).

Protein differential expression in normal tissues from HIPED for FIBIN Gene

This gene is overexpressed in Fetal gut (66.8).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for FIBIN Gene



Protein tissue co-expression partners for FIBIN Gene

NURSA nuclear receptor signaling pathways regulating expression of FIBIN Gene:

FIBIN

SOURCE GeneReport for Unigene cluster for FIBIN Gene:

Hs.712718

Evidence on tissue expression from TISSUES for FIBIN Gene

  • Nervous system(4.7)
genes like me logo Genes that share expression patterns with FIBIN: view

Primer Products

No data available for mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for FIBIN Gene

Orthologs for FIBIN Gene

This gene was present in the common ancestor of chordates.

Orthologs for FIBIN Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia FIBIN 34 35
  • 99.84 (n)
cow
(Bos Taurus)
Mammalia FIBIN 34 35
  • 91.79 (n)
mouse
(Mus musculus)
Mammalia Fibin 34 16 35
  • 89.52 (n)
rat
(Rattus norvegicus)
Mammalia Fibin 34
  • 88.73 (n)
dog
(Canis familiaris)
Mammalia FIBIN 34 35
  • 78.04 (n)
chicken
(Gallus gallus)
Aves FIBIN 34 35
  • 74.06 (n)
lizard
(Anolis carolinensis)
Reptilia FIBIN 35
  • 63 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia fibin 34
  • 69.62 (n)
zebrafish
(Danio rerio)
Actinopterygii fibinb 35
  • 61 (a)
OneToMany
fibina 35
  • 51 (a)
OneToMany
sbcb374 34
Species where no ortholog for FIBIN was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for FIBIN Gene

ENSEMBL:
Gene Tree for FIBIN (if available)
TreeFam:
Gene Tree for FIBIN (if available)

Paralogs for FIBIN Gene

No data available for Paralogs for FIBIN Gene

Variants for FIBIN Gene

Sequence variations from dbSNP and Humsavar for FIBIN Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs1000876451 -- 26,994,324(+) ATCCT(A/G)CGCTG utr-variant-5-prime
rs1001328568 -- 26,994,022(+) CCAAA(C/T)TTGTT upstream-variant-2KB
rs1001679473 -- 26,992,097(+) AGAGA(A/G)ATTGT upstream-variant-2KB
rs1001766556 -- 26,995,203(+) ATCAG(C/T)CCCGT utr-variant-3-prime
rs1002218994 -- 26,994,832(+) ATCAG(C/T)AAAAG reference, synonymous-codon

Structural Variations from Database of Genomic Variants (DGV) for FIBIN Gene

Variant ID Type Subtype PubMed ID
dgv1727n54 CNV gain 21841781
esv3625759 CNV gain 21293372
esv3625760 CNV gain 21293372

Variation tolerance for FIBIN Gene

Residual Variation Intolerance Score: 68.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.04; 37.52% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for FIBIN Gene

Human Gene Mutation Database (HGMD)
FIBIN
SNPedia medical, phenotypic, and genealogical associations of SNPs for
FIBIN

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FIBIN Gene

Disorders for FIBIN Gene

MalaCards: The human disease database

(1) MalaCards diseases for FIBIN Gene - From: DISEASES

Disorder Aliases PubMed IDs
wilson-turner syndrome
  • wilson-turner x-linked mental retardation syndrome
- elite association - COSMIC cancer census association via MalaCards
Search FIBIN in MalaCards View complete list of genes associated with diseases

Relevant External Links for FIBIN

Genetic Association Database (GAD)
FIBIN
Human Genome Epidemiology (HuGE) Navigator
FIBIN
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FIBIN
genes like me logo Genes that share disorders with FIBIN: view

No data available for UniProtKB/Swiss-Prot and Genatlas for FIBIN Gene

Publications for FIBIN Gene

  1. Fibin, a novel secreted lateral plate mesoderm signal, is essential for pectoral fin bud initiation in zebrafish. (PMID: 17196583) Wakahara T. … Itoh N. (Dev. Biol. 2007) 2 3 4 64
  2. Sequential use of transcriptional profiling, expression quantitative trait mapping, and gene association implicates MMP20 in human kidney aging. (PMID: 19834535) Wheeler H.E. … Kim S.K. (PLoS Genet. 2009) 3 46 64
  3. Signal sequence and keyword trap in silico for selection of full- length human cDNAs encoding secretion or membrane proteins from oligo- capped cDNA libraries. (PMID: 16303743) Otsuki T. … Isogai T. (DNA Res. 2005) 3 4 64
  4. Characterization of the expression, promoter activity and molecular architecture of fibin. (PMID: 21615908) Lakner J. … Schoneberg T. (BMC Biochem. 2011) 4 64
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 64

Products for FIBIN Gene

Sources for FIBIN Gene

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