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Aliases & Descriptions for FHIT
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| AP3Aase 1, 2, 3 | | Dinucleosidetriphosphatase 3 | | EC 3.6.1.29 3 | | FRA3B 1, 2, 5 | | bis(5'-adenosyl)-triphosphatase 2 | | dinucleosidetriphosphatase 2 |
| | | Descriptions |
|---|
| AP3A hydrolase 2, 3 | | Diadenosine 5',5'''-P1,P3-triphosphate hydrolase 2, 3 | | Fragile histidine triad protein 3 | | fragile histidine triad gene 2 | | tumor suppressor protein 2 |
|
| | Search outside databases for aliases for FHIT genePrevious GC identifers: GC03M058591 GC03M059076 GC03M059592 GC03U900473 GC03M059692 |
Summaries for FHIT(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for FHIT: This gene, a member of the histidine triad gene family, encodes a diadenosine 5',5'''-P1,P3-triphosphate hydrolase involved in purine metabolism. The gene encompasses the common fragile site FRA3B on chromosome 3, where carcinogen-induced damage can lead to translocations and aberrant transcripts of this gene. In fact, aberrant transcripts from this gene have been found in about half of all esophageal, stomach, and colon carcinomas. [provided by RefSeq] UniProtKB/Swiss-Prot: FHIT_HUMAN, P49789Function: Cleaves A-5'-PPP-5'A to yield AMP and ADP. Possible tumor suppressor for specific tissuesGene Wiki entry for FHIT |
Genomic Location for FHIT
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the FHIT gene 
Entrez Gene cytogenetic band: 3p14.2 Ensembl cytogenetic band: 3p14.2 HGNC cytogenetic band: 3p14.2FHIT Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 3 GeneLoc Exon Structure GeneLoc location for GC03M059712:
(about GC identifiers)
Start:
|
59,710,076 bp from pter |
End:
|
61,212,164 bp from pter |
Size:
|
1,502,089 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000003.10 NT_022517.17
| Proteins for FHIT
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: FHIT_HUMAN, P49789 (See
protein sequence)Recommended Name: Bis(5'-adenosyl)-triphosphatase Size: 147 amino acids; 16858 Da
Cofactor: Divalent cations. Magnesium, but manganese and to a lesser extent calcium or cobalt can be substituted; but not zinc, cadmium or nickel
Subunit: Homodimer
Subcellular location: Cytoplasm
Mass spectrometry: Mass=16733; Method=MALDI; Range=2-147; Source=PubMed:15007172;
PDB structures from and Proteopedia :1FHI (3D)
 1FIT (3D)
 2FHI (3D)
 2FIT (3D)
 3FIT (3D)
 4FIT (3D)
 5FIT (3D)
 6FIT (3D)
 
Secondary accessions: Q6IU12Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_002003.1
ENSEMBL proteins: ENSP00000342087
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
1 Gene Ontology (GO) cellular component term (links to tree view): About this table
Antibodies for FHIT: Assays for FHIT: | Protein
Domains/ Families for FHIT(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P49789
ProtoNet protein and cluster: P49789 1 Blocks protein family: IPB001310 Histidine triad (HIT) protein
UniProtKB/Swiss-Prot: FHIT_HUMAN, P49789Similarity: Contains 1 HIT domain | Gene Function for FHIT
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002012
Applied Biosystems Silencer® siRNAs for FHIT
Sigma-Aldrich siRNA and siRNA Panels for FHIT  Sigma-Aldrich shRNA for FHIT  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_002012                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002012                                  untagged cDNA clones in CMV expression vector (see all 2): NM_002012 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_002012
UniProtKB/Swiss-Prot: FHIT_HUMAN, P49789Function: Cleaves A-5'-PPP-5'A to yield AMP and ADP. Possible tumor suppressor for specific tissuesCatalytic activity: P(1)-P(3)-bis(5'-adenosyl) triphosphate + H(2)O = ADP + AMPEnzyme Number (IUBMB): EC 3.6.1.29 Genatlas biochemistry entry for FHIT:fragile histidine triad gene member of a superfamily HIT of nucleotide binding proteins,dinucleoside 5',5''' - P1,P3 - triphosphate Ap3A hydrolase,producing multiple transcripts in normal cell lines,non tumor specific,telomeric to PTPRG,encompassing the t(3;8) breakpoint in RCC1 and FRA3B,commonly but inconstantly involved in deletions in cancer cell-lines and in lung,pancreatic (RER+),stomach,kidney,cervical carcinomas and sporadic breast cancer of poor prognosis or in an advanced stage,maybe a tumor suppressor gene in relation to induction of apoptosis and cell cycle alteration and by interacting with microtubules and tubulin (see TSG3C)7 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Fhit):
5 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for FHIT
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
| 3 Sigma-Aldrich "Your Favorite Gene" Pathways for FHIT (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for FHIT 
5/44 Interacting proteins for FHIT (P497891, 2 ENSP000003420873) via UniProtKB, MINT, and/or STRING (see all 44
)About this table
3 Gene Ontology (GO) biological process terms (links to tree view): About this table
|
Drugs & Compounds for FHIT(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for FHIT 10/22 Novoseek chemical compound relationships for FHIT gene (see all 22
)
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| diadenosine triphosphate |
91.86 |
37 |
9576908 (4), 9543008 (4), 11896678 (1), 16547961 (1) (see all 17) |
| nickel subsulfide |
47.64 |
3 |
12678982 (2), 17044645 (1) |
| crcs |
47.31 |
4 |
11606365 (1), 12973852 (1) |
| galactose-1-phosphate |
29.15 |
5 |
10090754 (2), 9261067 (1), 15182206 (1) |
| histidine |
18.64 |
8 |
8794732 (2), 9391102 (1), 10090754 (1), 17310323 (1) (see all 5) |
| diethyl pyrocarbonate |
15.69 |
1 |
16359767 (1) |
| dutp |
13.31 |
1 |
15633221 (1) |
| protoporphyrin ix |
13.08 |
6 |
16990010 (2), 17310323 (2), 19286306 (2) |
| adp |
5.90 |
5 |
10090754 (2), 11896678 (1), 10407161 (1), 10027001 (1) |
| nucleoside |
4.04 |
4 |
12627509 (1), 9261067 (1), 10671479 (1), 18694747 (1) |
About this table
|
Transcripts for FHIT(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002012
Sigma-Aldrich siRNA and siRNA Panels for FHIT  Sigma-Aldrich shRNA for FHIT  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_002012 REFSEQ mRNAs for FHIT gene: NM_002012.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_002012               OriGene GFP tagged cDNA clone in CMV expression vector: NM_002012                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002012                                  untagged cDNA clones in CMV expression vector (see all 2): NM_002012  Additional cDNA sequence: AK127931.1 AK289824.1 BC032336.1 BC057223.1 DQ120721.1 U46922.1 11 DOTS entries: DT.451640 DT.92070447 DT.97795062 DT.101957680 DT.75187299 DT.100815436 DT.120886967 DT.120887070 DT.91967025 DT.95293229 DT.97836690 13 AceView cDNA sequences:AI275155 AW772653 AW299725 BG674126 CB996786 AL699473 BG494853 BX105615 BM007419 AI026665 U46922 NM_002012 R11128
highest scoring ESTs for FHIT:U46922 AI741386 CA306530 AA621493 AA918722 AI026665 AI245155 AI400094 AI582390 BF170093 Unigene Cluster for FHIT: Fragile histidine triad gene Hs.715588 [show with all ESTs]Unigene Representative Sequence: AK127931
GeneLoc Exon Structure
5/6 Alternative Splicing Database (ASD) splice patterns (SP) for FHIT (see all 6
)
| ExUns: | 1 | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5 | ^ | 6 | ^ | 7 | ^ | 8 | ^ | 9 | ^ | 10 | ^ | 11a | · | 11b | · | 11c | ^ | 12a | · | 12b | · | 12c | |
| SP1: | |   | - |   | - |   | - |   | |   | |   | - |   | |   | - |   | - |   | |   | - |   | - |   | |   | |   | |   | |
| SP2: | |   | |   | |   | - |   | - |   | - |   | - |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | - |   | - |   | |   | |   | |
| SP5: | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for FHIT
1 Ensembl transcript including schematic representation: ENST00000341848
|
Expression for FHIT
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| FHIT expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for FHIT
1 / 2 / 3 4 probe-sets matching FHIT gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: --
SOURCE GeneReport for Unigene cluster: Hs.715588
Expression variation in blood from EXPOLDB for FHIT UniProtKB/Swiss-Prot: FHIT_HUMAN, P49789Tissue specificity: Low levels expressed in all tissues tested. Phospho-FHIT observed in liver and kidney, but not in brain and lung. Phospho-FHIT undetected in all tested human tumor cell lines |
Orthologs for FHIT
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for FHIT gene from 5/12 species (see all 12
)
About this table Species with no ortholog for FHIT
ENSEMBL Gene Tree for FHIT | Paralogs for FHIT(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| -- |
SNPs/Variants for FHIT(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for FHIT (up to first 250kb)
|
Disorders & Mutations for FHIT
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 601153
UniProtKB/Swiss-Prot: FHIT_HUMAN, P49789
A chromosomal aberration involving FHIT is observed in early onset bilateral and multifocal clear cell renal carcinoma [MIM:144700]. Translocation t(3;8) (3p14.2) Associated with digestive tract cancers. Numerous tumor types are found to have aberrant forms of FHIT protein due to deletions in a coding region of chromosome 3p14.2 including the fragile site locus FRA3B10/95 Novoseek disease relationships for FHIT gene (see all 95
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| fragile sites chromosome |
85.28 |
7 |
17044645 (1), 9196019 (1), 16864578 (1), 12678982 (1) (see all 6) |
| allelic loss |
82.16 |
43 |
10375597 (3), 11169516 (3), 11731438 (2), 15047740 (2) (see all 28) |
| tumors |
72.17 |
864 |
16030101 (8), 12627509 (7), 16985034 (7), 10618602 (7) (see all 99) |
| cancer |
66.87 |
313 |
11712940 (5), 17457056 (4), 10334551 (4), 12574506 (4) (see all 99) |
| carcinoma squamous cell |
66.45 |
112 |
15231689 (8), 15757192 (4), 12753709 (4), 9699676 (3) (see all 51) |
| cancer lung |
65.67 |
192 |
17562266 (10), 11402444 (9), 12948402 (7), 16231322 (6) (see all 61) |
| renal clear cell carcinoma |
65.37 |
16 |
18378390 (4), 11920739 (2), 9679951 (2), 11390984 (1) (see all 8) |
| cervical carcinoma |
64.79 |
77 |
15573771 (8), 9354423 (6), 16078573 (4), 12893195 (4) (see all 25) |
| cervical cancer |
64.08 |
106 |
15642192 (7), 17029211 (4), 16963412 (4), 11498789 (3) (see all 36) |
| microsatellite instability |
64.08 |
12 |
15906520 (1), 11916557 (1), 16078573 (1), 16217683 (1) (see all 11) |
About this table
1 PharmGKB disease relationship for FHIT geneAbout this table
Genetic Association Database: FHIT Human Genome Epidemiology Navigator: FHIT (10 documents) Tumor Gene Database: FHIT
|
Medical News for FHIT(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for FHIT (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/578 PubMed articles for FHIT gene (see all 578
):- The FHIT gene, spanning the chromosome 3p14.2 fragile site and renal carcinoma-associated t(3;8) breakpoint, is abnormal in digestive tract cancers. (PubMed id 8598045)1, 2, 3, 4 Ohta M.... Huebner K. (1996)
- MAD analysis of FHIT, a putative human tumor suppressor from the HIT protein family. (PubMed id 9261067)1, 3, 4 Lima C.D....Hendrickson W.A. (1997)
- Genetic, biochemical, and crystallographic characterization of Fhit- substrate complexes as the active signaling form of Fhit. (PubMed id 9576908)1, 3, 4 Pace H.C....Brenner C. (1998)
- Fhit, a putative tumor suppressor in humans, is a dinucleoside 5',5''-P1,P3-triphosphate hydrolase. (PubMed id 8794732)1, 3, 4 Barnes L.D.... Huebner K. (1996)
- Fhit is a physiological target of the protein kinase Src. (PubMed id 15007172)1, 3, 4 Pekarsky Y.... Croce C.M. (2004)
- The mechanism of action of the fragile histidine triad, Fhit: isolation of a covalent adenylyl enzyme and chemical rescue of H96G- Fhit. (PubMed id 15182206)1, 3, 4 Huang K.... Frey P.A. (2004)
- The effect of codon 98 of the FHIT gene on cervical cancer in Korean women. (PubMed id 14675322)1, 3, 6 Jee S.H....Park J.S. (2003)
- Nitrilase and Fhit homologs are encoded as fusion proteins in Drosophila melanogaster and Caenorhabditis elegans. (PubMed id 9671749)1, 2, 3 Pekarsky Y....Croce C.M. (1998)
- Structure and expression of the human FHIT gene in normal and tumor cells. (PubMed id 9012482)1, 3, 4 Druck T.... Huebner K. (1997)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
|
Search for FHIT
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing FHIT
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing FHIT
(According to HUGE)
About This Section
| -- |
Specialized Databases showing FHIT(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for FHIT(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for FHIT:

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Incremental update: 13 Oct 2009
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