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Aliases for FHDC1 Gene

Aliases for FHDC1 Gene

  • FH2 Domain Containing 1 2 3
  • KIAA1727 4

External Ids for FHDC1 Gene

Previous GeneCards Identifiers for FHDC1 Gene

  • GC04P154084
  • GC04P153864
  • GC04P149590
  • GC04P152936

Summaries for FHDC1 Gene

GeneCards Summary for FHDC1 Gene

FHDC1 (FH2 Domain Containing 1) is a Protein Coding gene. An important paralog of this gene is FMN2.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FHDC1 Gene

Genomics for FHDC1 Gene

Regulatory Elements for FHDC1 Gene

Genomic Location for FHDC1 Gene

Chromosome:
4
Start:
152,911,570 bp from pter
End:
152,979,696 bp from pter
Size:
68,127 bases
Orientation:
Plus strand

Genomic View for FHDC1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FHDC1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FHDC1 Gene

Proteins for FHDC1 Gene

  • Protein details for FHDC1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9C0D6-FHDC1_HUMAN
    Recommended name:
    FH2 domain-containing protein 1
    Protein Accession:
    Q9C0D6

    Protein attributes for FHDC1 Gene

    Size:
    1143 amino acids
    Molecular mass:
    124762 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FHDC1 Gene

Proteomics data for FHDC1 Gene at MOPED

Post-translational modifications for FHDC1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for FHDC1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for FHDC1 Gene

Domains & Families for FHDC1 Gene

Protein Domains for FHDC1 Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for FHDC1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9C0D6

UniProtKB/Swiss-Prot:

FHDC1_HUMAN :
  • Contains 1 FH2 (formin homology 2) domain.
Domain:
  • Contains 1 FH2 (formin homology 2) domain.
genes like me logo Genes that share domains with FHDC1: view

No data available for Gene Families for FHDC1 Gene

Function for FHDC1 Gene

Phenotypes for FHDC1 Gene

GenomeRNAi human phenotypes for FHDC1:
genes like me logo Genes that share phenotypes with FHDC1: view

Animal Model Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for FHDC1

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , Transcription Factor Targets and HOMER Transcription for FHDC1 Gene

Localization for FHDC1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FHDC1 Gene

Pathways & Interactions for FHDC1 Gene

SuperPathways for FHDC1 Gene

No Data Available

Interacting Proteins for FHDC1 Gene

Gene Ontology (GO) - Biological Process for FHDC1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FHDC1 Gene

Drugs & Compounds for FHDC1 Gene

No Compound Related Data Available

Transcripts for FHDC1 Gene

mRNA/cDNA for FHDC1 Gene

Unigene Clusters for FHDC1 Gene

FH2 domain containing 1:
Representative Sequences:

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for FHDC1

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for FHDC1 Gene

No ASD Table

Relevant External Links for FHDC1 Gene

GeneLoc Exon Structure for
FHDC1
ECgene alternative splicing isoforms for
FHDC1

Expression for FHDC1 Gene

mRNA expression in normal human tissues for FHDC1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for FHDC1 Gene

This gene is overexpressed in Skin - Sun Exposed (Lower leg) (x4.7), Skin - Not Sun Exposed (Suprapubic) (x4.4), and Thyroid (x4.0).

Protein differential expression in normal tissues from HIPED for FHDC1 Gene

This gene is overexpressed in Cervix (31.7), Breast (23.7), and Peripheral blood mononuclear cells (11.7).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for FHDC1 Gene



SOURCE GeneReport for Unigene cluster for FHDC1 Gene Hs.132629

genes like me logo Genes that share expression patterns with FHDC1: view

Protein tissue co-expression partners for FHDC1 Gene

Primer Products

In Situ Assay Products

No data available for mRNA Expression by UniProt/SwissProt for FHDC1 Gene

Orthologs for FHDC1 Gene

This gene was present in the common ancestor of animals.

Orthologs for FHDC1 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia FHDC1 35
  • 75.54 (n)
  • 70.01 (a)
FHDC1 36
  • 71 (a)
OneToOne
dog
(Canis familiaris)
Mammalia FHDC1 35
  • 80.97 (n)
  • 75.91 (a)
FHDC1 36
  • 75 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Fhdc1 35
  • 76.09 (n)
  • 72.45 (a)
Fhdc1 16
Fhdc1 36
  • 72 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia FHDC1 35
  • 99.07 (n)
  • 98.5 (a)
FHDC1 36
  • 99 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Fhdc1 35
  • 76.69 (n)
  • 73.91 (a)
oppossum
(Monodelphis domestica)
Mammalia FHDC1 36
  • 60 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia FHDC1 36
  • 63 (a)
OneToOne
chicken
(Gallus gallus)
Aves FHDC1 35
  • 60.29 (n)
  • 54.13 (a)
FHDC1 36
  • 52 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia FHDC1 36
  • 50 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia fhdc1 35
  • 55.26 (n)
  • 49.31 (a)
zebrafish
(Danio rerio)
Actinopterygii fhdc1 35
  • 50.51 (n)
  • 46.04 (a)
fhdc1 36
  • 38 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta form3 36
  • 19 (a)
OneToOne
Species with no ortholog for FHDC1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for FHDC1 Gene

ENSEMBL:
Gene Tree for FHDC1 (if available)
TreeFam:
Gene Tree for FHDC1 (if available)

Paralogs for FHDC1 Gene

genes like me logo Genes that share paralogs with FHDC1: view

Variants for FHDC1 Gene

Sequence variations from dbSNP and Humsavar for FHDC1 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type MAF
VAR_050990 -
VAR_069394 -

Structural Variations from Database of Genomic Variants (DGV) for FHDC1 Gene

Variant ID Type Subtype PubMed ID
nsv830117 CNV Gain 17160897
nsv461691 CNV Loss 19166990
nsv509019 CNV Insertion 20534489

Variation tolerance for FHDC1 Gene

Residual Variation Intolerance Score: 97.17% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 16.31; 97.66% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for FHDC1 Gene

HapMap Linkage Disequilibrium report
FHDC1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FHDC1 Gene

Disorders for FHDC1 Gene

Relevant External Links for FHDC1

Genetic Association Database (GAD)
FHDC1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FHDC1
genes like me logo Genes that share disorders with FHDC1: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FHDC1 Gene

Publications for FHDC1 Gene

  1. Identification and characterization of human FHDC1, mouse Fhdc1 and zebrafish fhdc1 genes in silico. (PMID: 15138637) Katoh M. … Katoh M. (Int. J. Mol. Med. 2004) 2 67
  2. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie A.G. … Butte N.F. (PLoS ONE 2012) 67
  3. Diagnostic exome sequencing in persons with severe intellectual disability. (PMID: 23033978) de Ligt J. … Vissers L.E. (N. Engl. J. Med. 2012) 67
  4. System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation. (PMID: 21406692) Rigbolt K.T. … Blagoev B. (Sci. Signal. 2011) 67
  5. Genome-wide genotyping in amyotrophic lateral sclerosis and neurologically normal controls: first stage analysis and public release of data. (PMID: 17362836) Schymick J.C. … Traynor B.J. (Lancet Neurol 2007) 67

Products for FHDC1 Gene

Sources for FHDC1 Gene

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