FGFR1OP Gene
protein-coding GIFtS: 55
GCID: GC06P167412
|
|
FGFR1 oncogene partner
| |
Aliases
for FGFR1OP gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| FGFR1 Oncogene Partner1 2 | | FOP1 2 3 5 | | Fibroblast Growth Factor Receptor 1 Oncogene Partner2 |
Export aliases for FGFR1OP gene to outside databasesPrevious GC identifers: GC06P167246 GC06P167322 GC06P167384 GC06P167332 GC06P164887 |
Summaries
for FGFR1OP gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
Entrez Gene summary for FGFR1OP:
This gene encodes a largely hydrophilic protein postulated to be a leucine-rich protein family member. At(6;8)(q27;p11) chromosomal translocation, fusing this gene and the fibroblast growth factor receptor 1 (FGFR1) gene,has been found in cases of myeloproliferative disorder. The resulting chimeric protein contains the N-terminalleucine-rich region of this encoded protein fused to the catalytic domain of FGFR1. This gene is thought to play animportant role in normal proliferation and differentiation of the erythroid lineage. Alternatively spliced transcriptvariants that encode different proteins have been identified. (provided by RefSeq, Jul 2008)
UniProtKB/Swiss-Prot: FR1OP_HUMAN, O95684Function: Required for anchoring microtubules to the centrosomes
Gene Wiki entry for FGFR1OP
|
Genomic Views
for FGFR1OP gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000006.11 NC_018917.1 NT_025741.15
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the FGFR1OP gene promoter:
FOXF2 Sp1 Pax-5 CUTL1 POU3F2 MEF-2A HOXA5 c-Myb aMEF-2
Other transcription factors
Search SABiosciences Chromatin IP Primers for FGFR1OP
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat FGFR1OP |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 6q27 Ensembl cytogenetic band: 6q27 HGNC cytogenetic band: 6q27FGFR1OP Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 6 GeneLoc Exon Structure GeneLoc location for GC06P167412: view genomic region
(about GC identifiers)
Start:
|
167,412,670 bp from pter |
End:
|
167,455,906 bp from pter |
Size:
|
43,237 bases |
Orientation:
|
plus strand |
|
Proteins
for FGFR1OP gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: FR1OP_HUMAN, O95684 (See
protein sequence)Recommended Name: FGFR1 oncogene partner Size: 399 amino acids; 43065 Da
Subunit: Homodimer. Part of a ternary complex that contains CEP350, FGFR1OP and MAPRE1. Interacts directly with CEP350and MAPRE1
Subcellular location: Cytoplasm, cytoskeleton, centrosome. Note=Associated with gamma-tubulin
1 PDB 3D structure from  and Proteopedia  for FGFR1OP:2D68 (3D)
Secondary accessions: A8K1D1 B2R705 Q49AI0 Q5R3F6 Q96EW1Alternative splicing: 3 isoforms: O95684-1 O95684-2 O95684-3 Explore the universe of human proteins at neXtProt for FGFR1OP: NX_O95684
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_O95684
FGFR1OP Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins (2 alternative transcripts):
NP_008976.1 NP_919410.1
ENSEMBL proteins: ENSP00000355812 ENSP00000230248 Reactome Protein details: O95684
Human Recombinant Protein Products:
Gene Ontology (GO): 4 cellular component terms (GO ID links to tree view): About this table
FGFR1OP for ontologies About GeneDecksing
FGFR1OP Antibody Products:
Assay Products for FGFR1OP: |
Protein
Domains /
Families
for FGFR1OP gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
FGFR1OP for domains About GeneDecksing
2 InterPro domains/families:Graphical View of Domain Structure for InterPro Entry O95684ProtoNet protein and cluster: O95684 1 Blocks protein family: IPB006594 Lissencephaly type-1-like homology motif
UniProtKB/Swiss-Prot: FR1OP_HUMAN, O95684Similarity: Belongs to the FGFR1OP familySimilarity: Contains 1 LisH domain |
Function
for FGFR1OP gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Function Summary:
UniProtKB/Swiss-Prot: FR1OP_HUMAN, O95684Function: Required for anchoring microtubules to the centrosomes
Clone
Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for FGFR1OP (see all 4)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for FGFR1OP (see all 2)
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In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for FGFR1OP |
Gene Ontology (GO): 5 molecular function terms (GO ID links to tree view): About this table
FGFR1OP for ontologies About GeneDecksing
|
Pathways & Interactions
for FGFR1OP gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Unified GeneCards pathways About this table
See pathways by source
| Super-pathway | contained gene-specific pathways |
|---|
| 1 | Recruitment of mitotic centrosome proteins and complexes | | | 2 | Signaling by FGFR1 mutants | | | 3 | Cell Cycle | | | 4 | Disease | | | 5 | Signaling by FGFR | |
Pathway sources
See GeneCards unified pathways
Show all pathways
5/14 
Reactome Pathways for FGFR1OP (see all 14)
FGFR1OP for pathways About GeneDecksing
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for FGFR1OP
STRING Interaction
Network Preview (showing 5 interactants - click image to see 25)
5/71 Interacting proteins for FGFR1OP (O956842, 3 ENSP000003558124) via UniProtKB, MINT, STRING, and/or I2D (see all 71)About this table
Gene Ontology (GO): 5/8 biological process terms (GO ID links to tree view) (see all 8): About this table
FGFR1OP for ontologies About GeneDecksing
|
Drugs & Compounds
for FGFR1OP gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for FGFR1OP
Search CenterWatch for drugs/clinical trials and news about FGFR1OP / FR1OP
|
Transcripts
for FGFR1OP gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for FGFR1OP gene (2 alternative transcripts): NM_007045.2 NM_194429.1 Unigene Cluster for FGFR1OP: FGFR1 oncogene partner Hs.487175 [show with all ESTs]Unigene Representative Sequence: BC0377856 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000366847(uc011egp.1 uc003qvj.3 uc003qvk.3) ENST00000349556
ENST00000494781 ENST00000476078 ENST00000496181 ENST00000488525
Clone
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OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for FGFR1OP (see all 2)
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript: all cDNA clones in your preferred vector (see all 2): FGFR1OP (NM_007045) | | | DNA2.0 Custom Codon Optimized Gene
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Additional cDNA sequence: AJ420472.1 AK289846.1 AK294950.1 AK312791.1 BC011902.2 BC037785.1 Y18046.1 13 DOTS entries: DT.440730 DT.100758392 DT.100651743 DT.95359744 DT.121386135 DT.95290749 DT.101963467 DT.121386076 DT.121386109 DT.121386137 DT.97804512 DT.99965900 DT.99983130 24/78 AceView cDNA sequences (see all 78): NM_031409 BM874378 BG289619 BC037960 BU193028 AI566733 AA292126 BE550052 AY242126 AA720658 NM_004367 AI872081 BU625682 BQ082444 BG400623 CD558603 AA442048 BQ427775 U60000 AL043487 CB306621 AA865712 BM999497 AW404691
GeneLoc Exon Structure
|
Expression
for FGFR1OP gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| FGFR1OP expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: ATGAAAGGTG
About this image
See FGFR1OP Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for FGFR1OP
SOURCE GeneReport for Unigene cluster: Hs.487175
UniProtKB/Swiss-Prot: FR1OP_HUMAN, O95684Tissue specificity: Ubiquitous. Highly expressed in heart, liver, muscle, kidney, intestine, colon, adrenal gland,prostate, testis, and pancreas
SABiosciences Custom PCR Arrays for FGFR1OP
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for FGFR1OP
Browse OriGene validated miRNA SYBR primer pairs
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Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for FGFR1OP |
Orthologs
for FGFR1OP gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of eukaryotes.
Orthologs for FGFR1OP gene from 8/20 species (see all 20) About this table
| Organism |
Taxonomic
classification |
Gene |
Description |
Human
Similarity |
Orthology
Type |
Details |
mouse
(Mus musculus) |
Mammalia |
Fgfr1op1 , 5 |
Fgfr1 oncogene partner1, 5 |
86.38(n)1
84.71(a)1 |
|
17 (4.88 cM)5
752961 NM_001197046.11 NP_001183975.11
81655015 |
chicken
(Gallus gallus) |
Aves |
FGFR1OP1 |
FGFR1 oncogene partner |
74.11(n)
71.39(a) |
|
421568 XM_419609.3 XP_419609.1 |
lizard
(Anolis carolinensis) |
Reptilia |
FGFR1OP6 |
-- |
64(a) |
1 ↔ 1 |
1(225517084-225546191) |
African clawed frog
(Xenopus laevis) |
Amphibia |
Xl.157742 |
Xenopus laevis transcribed sequence with moderate similarity to protein refNP_008976.1 (H.sapiens) FGFR1 oncogene partner [Homo sapiens] less |
77.62(n) |
|
BX854166.1 |
zebrafish
(Danio rerio) |
Actinopterygii |
Dr.36462 |
Transcribed sequence with weak similarity to protein refNP_008976.1 (H.sapiens) FGFR1 oncogene partner [Homo sapiens] less |
74.1(n) |
|
CK352943.1 |
honey bee
(Apis mellifera) |
Insecta |
-- |
-- |
22(a) |
1 ↔ 1 |
Group5.27(140935-143720) |
thale cress
(Arabidopsis thaliana) |
eudicotyledons |
TON1A6TON1B6 |
tonneau 1b (TON1b) |
26(a)25(a) |
many → 1many → 1 |
3(20381508-20383789) 3(20383956-20386382) |
rice
(Oryza sativa) |
Liliopsida |
---- |
tonneau 1b, putative, expressed |
25(a)21(a) |
many → 1many → 1 |
12(95642-99000) 11(99824-103177) |
ENSEMBL Gene Tree for FGFR1OP (if available)
TreeFam Gene Tree for FGFR1OP (if available) |
Paralogs
for FGFR1OP gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| -- |
Genomic Variants
for FGFR1OP gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 6 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for FGFR1OP (167412670 - 167455906 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 2 variations for FGFR1OP
2 CNVs: 8538 39486 | SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing FGFR1OP |
|
Disorders
/ Diseases
for FGFR1OP gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database, Novoseek,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
FGFR1OP for disorders About GeneDecksing
OMIM gene information: 605392
OMIM disorders: --
UniProtKB/Swiss-Prot: FR1OP_HUMAN, O95684
Note=A chromosomal aberration involving FGFR1OP may be a cause of stem cell myeloproliferative disorder (MPD).Translocation t(6;8)(q27;p11) with FGFR1. MPD is characterized by myeloid hyperplasia, eosinophilia and T-cell orB-cell lymphoblastic lymphoma. In general it progresses to acute myeloid leukemia. The fusion proteins FGFR1OP-FGFR1or FGFR1-FGFR1OP may exhibit constitutive kinase activity and be responsible for the transforming activity
19  diseases for FGFR1OP: About MalaCardsmyeloproliferative disorder fibrodysplasia ossificans progressiva cerebral cavernous malformations cavernous malformation
cerebral cavernous malformations 3 dental fluorosis nodular malignant melanoma ankylosis
ulcerative colitis lymphoblastic lymphoma lissencephaly vitiligo
crohn's disease cerebritis hepatitis b lung cancer
hepatitis melanoma prostatitis
1 disease from the University of Copenhagen DISEASES database for FGFR1OP:steroid-induced glaucoma 1 Novoseek disease relationship for FGFR1OP gene About this table
| Disease |
-log (P-Val) |
Hits |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| myeloproliferative disorders |
69.1 |
1 |
9949182 (1) |
Human Genome Epidemiology (HuGE) Navigator: FGFR1OP (5 documents)
Export disorders for FGFR1OP gene to outside databases
|
Publications
for FGFR1OP gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for FGFR1OP gene, integrated from 9 sources (see all 40):
(articles sorted by number of sources associating them with FGFR1OP) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- The t(6;8)(q27;p11) translocation in a stem cell myeloproliferative disorder fuses a novel gene, FOP, to fibroblast growth factor receptor 1. (PubMed id 9949182)1, 2, 3, 9 Popovici C.... Pebusque M.-J. (1999)
- Structure of the N-terminal domain of the FOP (FGFR1OP) protein and implications for its dimerization and centrosomal localization. (PubMed id 16690081)1, 2, 9 Mikolajka A....Holak T.A. (2006)
- A complex of two centrosomal proteins, CAP350 and FOP, cooperates with EB1 in microtubule anchoring. (PubMed id 16314388)1, 2, 9 Yan X.... Nigg E.A. (2006)
- Robust phosphoproteomic profiling of tyrosine phosphorylation sites from human T cells using immobilized metal affinity chromatography and tandem mass spectrometry. (PubMed id 15144186)1, 2 Brill L.M....Peters E.C. (2004)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
- Proteomic characterization of the human centrosome by protein correlation profiling. (PubMed id 14654843)1, 2 Andersen J.S....Mann M. (2003)
- The DNA sequence and analysis of human chromosome 6. (PubMed id 14574404)1, 2 Mungall A.J.... Beck S. (2003)
- [The 8p11 myeloproliferative syndrome] (PubMed id 10373756)1, 3 Reither A....Cross N.C. (1999)
- Fibroblast growth factor receptor 1 oncogene partner as a novel prognostic biomarker and therapeutic target for lung cancer. (PubMed id 17888034)1, 9 Mano Y....Daigo Y. (2007)
- Charting the landscape of tandem BRCT domain-mediated protein interactions. (PubMed id 22990118)1 Woods N.T....Monteiro A.N. (2012)
|
External Searches for FGFR1OP gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing FGFR1OP gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing FGFR1OP gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing FGFR1OP gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
|
About This Section
| Patent Information for FGFR1OP gene:
Search GeneIP for patents involving FGFR1OP
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for FGFR1OP gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
 | |
 | |
 |
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| |
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 |
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| | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for FGFR1OP |
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