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Aliases for FGFR1OP Gene

Aliases for FGFR1OP Gene

  • FGFR1 Oncogene Partner 2 3 5
  • FOP 3 4
  • Fibroblast Growth Factor Receptor 1 Oncogene Partner 3

External Ids for FGFR1OP Gene

Previous GeneCards Identifiers for FGFR1OP Gene

  • GC06P167246
  • GC06P167322
  • GC06P167384
  • GC06P167332
  • GC06P167412
  • GC06P164887

Summaries for FGFR1OP Gene

Entrez Gene Summary for FGFR1OP Gene

  • This gene encodes a largely hydrophilic centrosomal protein that is required for anchoring microtubules to subcellular structures. A t(6;8)(q27;p11) chromosomal translocation, fusing this gene and the fibroblast growth factor receptor 1 (FGFR1) gene, has been found in cases of myeloproliferative disorder. The resulting chimeric protein contains the N-terminal leucine-rich region of this encoded protein fused to the catalytic domain of FGFR1. Alterations in this gene may also be associated with Crohn's disease, Graves' disease, and vitiligo. Alternatively spliced transcript variants that encode different proteins have been identified. [provided by RefSeq, Jul 2013]

GeneCards Summary for FGFR1OP Gene

FGFR1OP (FGFR1 Oncogene Partner) is a Protein Coding gene. Diseases associated with FGFR1OP include Graves' Disease and Crohn's Disease. Among its related pathways are Regulation of PLK1 Activity at G2/M Transition and FGFR1 mutant receptor activation. GO annotations related to this gene include protein homodimerization activity and protein kinase binding.

UniProtKB/Swiss-Prot for FGFR1OP Gene

  • Required for anchoring microtubules to the centrosomes.

Gene Wiki entry for FGFR1OP Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FGFR1OP Gene

Genomics for FGFR1OP Gene

Regulatory Elements for FGFR1OP Gene

Enhancers for FGFR1OP Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G167089 1.9 FANTOM5 Ensembl ENCODE dbSUPER 10.8 +93.8 93789 7.3 HDGF PKNOX1 FOXA2 MLX WRNIP1 DMAP1 ZNF48 ZNF143 ZNF207 MXD4 RNASET2 FGFR1OP LOC105378120 CCR6 GPR31 PIR47545 PIR53334
GH06G167150 1.8 FANTOM5 Ensembl ENCODE dbSUPER 11.3 +153.4 153358 3.4 PKNOX1 SIN3A ELK1 CBX5 FOS KLF13 SP5 JUNB REST TBX21 GPR31 RNASET2 CCR6 LOC105378120 FGFR1OP ENSG00000249141 UNC93A RPS6KA2-AS1 RPS6KA2 AFDN
GH06G167046 1.4 FANTOM5 Ensembl ENCODE 12 +48.3 48264 2.2 HDGF CTCF PKNOX1 RAD21 ARID3A POLR2A ZNF366 EED RELB ETV6 RNASET2 CCR6 LOC105378120 FGFR1OP ENSG00000249141 GPR31 GC06P167051 GC06P167042 PIR56971
GH06G167102 1.5 Ensembl ENCODE dbSUPER 10.5 +104.2 104185 1.7 HDGF ATF1 FOXA2 GLI4 YBX1 TCF12 GATA2 ZNF143 ZNF548 SP5 ENSG00000261420 RNASET2 AFDN-AS1 LOC105378120 FGFR1OP CCR6 GC06M167096
GH06G167129 1.2 ENCODE dbSUPER 11.4 +131.4 131370 2.7 PKNOX1 FOXA2 MLX ARID4B ZNF48 TCF12 SLC30A9 FOS SP5 MIER2 LOC105378120 FGFR1OP GPR31 RPS6KA2 RPS6KA2-AS1 RNASET2 LOC105378122 TCP10L2 LOC105378124
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FGFR1OP on UCSC Golden Path with GeneCards custom track

Promoters for FGFR1OP Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000206900 -82 2601 HDGF HNRNPUL1 PKNOX1 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF143

Genomic Location for FGFR1OP Gene

Chromosome:
6
Start:
166,999,182 bp from pter
End:
167,052,713 bp from pter
Size:
53,532 bases
Orientation:
Plus strand

Genomic View for FGFR1OP Gene

Genes around FGFR1OP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FGFR1OP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FGFR1OP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FGFR1OP Gene

Proteins for FGFR1OP Gene

  • Protein details for FGFR1OP Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O95684-FR1OP_HUMAN
    Recommended name:
    FGFR1 oncogene partner
    Protein Accession:
    O95684
    Secondary Accessions:
    • A8K1D1
    • B2R705
    • Q49AI0
    • Q5R3F6
    • Q96EW1

    Protein attributes for FGFR1OP Gene

    Size:
    399 amino acids
    Molecular mass:
    43065 Da
    Quaternary structure:
    • Homodimer. Part of a ternary complex that contains CEP350, FGFR1OP and MAPRE1. Interacts directly with CEP350 and MAPRE1.

    Three dimensional structures from OCA and Proteopedia for FGFR1OP Gene

    Alternative splice isoforms for FGFR1OP Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for FGFR1OP Gene

Post-translational modifications for FGFR1OP Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for FGFR1OP Gene

No data available for DME Specific Peptides for FGFR1OP Gene

Domains & Families for FGFR1OP Gene

Protein Domains for FGFR1OP Gene

Suggested Antigen Peptide Sequences for FGFR1OP Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

O95684

UniProtKB/Swiss-Prot:

FR1OP_HUMAN :
  • Belongs to the FGFR1OP family.
Family:
  • Belongs to the FGFR1OP family.
genes like me logo Genes that share domains with FGFR1OP: view

No data available for Gene Families for FGFR1OP Gene

Function for FGFR1OP Gene

Molecular function for FGFR1OP Gene

UniProtKB/Swiss-Prot Function:
Required for anchoring microtubules to the centrosomes.

Gene Ontology (GO) - Molecular Function for FGFR1OP Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004713 protein tyrosine kinase activity TAS --
GO:0005515 protein binding IPI 17888034
GO:0019901 protein kinase binding IPI 17888034
GO:0030292 protein tyrosine kinase inhibitor activity IDA 17888034
GO:0042803 protein homodimerization activity IDA 16690081
genes like me logo Genes that share ontologies with FGFR1OP: view
genes like me logo Genes that share phenotypes with FGFR1OP: view

Animal Models for FGFR1OP Gene

MGI Knock Outs for FGFR1OP:

Animal Model Products

miRNA for FGFR1OP Gene

miRTarBase miRNAs that target FGFR1OP

Inhibitory RNA Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for FGFR1OP Gene

Localization for FGFR1OP Gene

Subcellular locations from UniProtKB/Swiss-Prot for FGFR1OP Gene

Cytoplasm, cytoskeleton, microtubule organizing center, centrosome. Note=Associated with gamma-tubulin.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for FGFR1OP gene
Compartment Confidence
cytoskeleton 5
nucleus 5
cytosol 5

Gene Ontology (GO) - Cellular Components for FGFR1OP Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA 17888034
GO:0005737 cytoplasm IEA --
GO:0005813 centrosome IDA 16690081
GO:0005815 microtubule organizing center IEA --
GO:0005829 cytosol TAS --
genes like me logo Genes that share ontologies with FGFR1OP: view

Pathways & Interactions for FGFR1OP Gene

genes like me logo Genes that share pathways with FGFR1OP: view

Pathways by source for FGFR1OP Gene

SIGNOR curated interactions for FGFR1OP Gene

Activates:

Gene Ontology (GO) - Biological Process for FGFR1OP Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000086 G2/M transition of mitotic cell cycle TAS --
GO:0006469 negative regulation of protein kinase activity IDA 17888034
GO:0008284 positive regulation of cell proliferation IDA 17888034
GO:0018108 peptidyl-tyrosine phosphorylation IEA --
GO:0030307 positive regulation of cell growth IDA 17888034
genes like me logo Genes that share ontologies with FGFR1OP: view

Drugs & Compounds for FGFR1OP Gene

No Compound Related Data Available

Transcripts for FGFR1OP Gene

Unigene Clusters for FGFR1OP Gene

FGFR1 oncogene partner:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for FGFR1OP Gene

No ASD Table

Relevant External Links for FGFR1OP Gene

GeneLoc Exon Structure for
FGFR1OP
ECgene alternative splicing isoforms for
FGFR1OP

Expression for FGFR1OP Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FGFR1OP Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for FGFR1OP Gene

This gene is overexpressed in Testis (45.0) and Blymphocyte (7.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for FGFR1OP Gene



Protein tissue co-expression partners for FGFR1OP Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of FGFR1OP Gene:

FGFR1OP

SOURCE GeneReport for Unigene cluster for FGFR1OP Gene:

Hs.487175

mRNA Expression by UniProt/SwissProt for FGFR1OP Gene:

O95684-FR1OP_HUMAN
Tissue specificity: Ubiquitous. Highly expressed in heart, liver, muscle, kidney, intestine, colon, adrenal gland, prostate, testis, and pancreas.

Evidence on tissue expression from TISSUES for FGFR1OP Gene

  • Nervous system(4.4)
  • Liver(4.3)
  • Blood(4.2)
  • Muscle(4.2)
genes like me logo Genes that share expression patterns with FGFR1OP: view

Primer Products

No data available for mRNA differential expression in normal tissues and Phenotype-based relationships between genes and organs from Gene ORGANizer for FGFR1OP Gene

Orthologs for FGFR1OP Gene

This gene was present in the common ancestor of chordates.

Orthologs for FGFR1OP Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia FGFR1OP 34 35
  • 99.25 (n)
cow
(Bos Taurus)
Mammalia FGFR1OP 34 35
  • 87.47 (n)
rat
(Rattus norvegicus)
Mammalia LOC683722 34
  • 87.47 (n)
dog
(Canis familiaris)
Mammalia FGFR1OP 34 35
  • 86.5 (n)
mouse
(Mus musculus)
Mammalia Fgfr1op 34 16 35
  • 86.38 (n)
oppossum
(Monodelphis domestica)
Mammalia -- 35
  • 76 (a)
OneToMany
-- 35
  • 64 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia FGFR1OP 35
  • 73 (a)
OneToOne
chicken
(Gallus gallus)
Aves FGFR1OP 35 34
  • 72.84 (n)
OneToOne
lizard
(Anolis carolinensis)
Reptilia FGFR1OP 35
  • 66 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia fgfr1op 34
  • 64.58 (n)
Str.6447 34
African clawed frog
(Xenopus laevis)
Amphibia Xl.15774 34
zebrafish
(Danio rerio)
Actinopterygii fgfr1op 34 35
  • 60.23 (n)
Dr.3646 34
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.846 34
Species where no ortholog for FGFR1OP was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for FGFR1OP Gene

ENSEMBL:
Gene Tree for FGFR1OP (if available)
TreeFam:
Gene Tree for FGFR1OP (if available)

Paralogs for FGFR1OP Gene

No data available for Paralogs for FGFR1OP Gene

Variants for FGFR1OP Gene

Sequence variations from dbSNP and Humsavar for FGFR1OP Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1000032773 -- 167,037,680(+) AGAGG(A/G)TATGT intron-variant
rs1000046212 -- 166,999,493(+) AACAG(A/C)GGGGT upstream-variant-2KB, reference, missense
rs1000111003 -- 167,010,766(+) TATTT(A/G)TGTTT intron-variant
rs1000210776 -- 167,028,500(+) GTTTT(A/G)CAACA intron-variant
rs1000221327 -- 167,020,714(+) GACCA(A/G)CGTGG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FGFR1OP Gene

Variant ID Type Subtype PubMed ID
esv2182370 CNV deletion 18987734
esv2733213 CNV deletion 23290073
esv2733214 CNV deletion 23290073
esv2733215 CNV deletion 23290073
esv2733216 CNV deletion 23290073
esv2752099 CNV gain 17911159
esv3327167 CNV insertion 20981092
esv3355616 CNV duplication 20981092
nsv1124147 CNV deletion 24896259
nsv464140 CNV loss 19166990
nsv519550 CNV loss 19592680
nsv605260 CNV gain 21841781

Variation tolerance for FGFR1OP Gene

Residual Variation Intolerance Score: 66.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 5.83; 73.90% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for FGFR1OP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FGFR1OP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FGFR1OP Gene

Disorders for FGFR1OP Gene

MalaCards: The human disease database

(4) MalaCards diseases for FGFR1OP Gene - From: DISEASES, Novoseek, and GeneCards

Disorder Aliases PubMed IDs
graves' disease
  • toxic diffuse goiter
crohn's disease
  • ileitis
8p11 myeloproliferative syndrome
  • chromosome 8p11 myeloproliferative syndrome
bone marrow cancer
  • bone marrow neoplasm
- elite association - COSMIC cancer census association via MalaCards

UniProtKB/Swiss-Prot

FR1OP_HUMAN
  • Note=A chromosomal aberration involving FGFR1OP may be a cause of stem cell myeloproliferative disorder (MPD). Translocation t(6;8)(q27;p11) with FGFR1. MPD is characterized by myeloid hyperplasia, eosinophilia and T-cell or B-cell lymphoblastic lymphoma. In general it progresses to acute myeloid leukemia. The fusion proteins FGFR1OP-FGFR1 or FGFR1-FGFR1OP may exhibit constitutive kinase activity and be responsible for the transforming activity (PubMed:9949182). {ECO:0000269 PubMed:9949182}.

Relevant External Links for FGFR1OP

Genetic Association Database (GAD)
FGFR1OP
Human Genome Epidemiology (HuGE) Navigator
FGFR1OP
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FGFR1OP
genes like me logo Genes that share disorders with FGFR1OP: view

No data available for Genatlas for FGFR1OP Gene

Publications for FGFR1OP Gene

  1. The t(6;8)(q27;p11) translocation in a stem cell myeloproliferative disorder fuses a novel gene, FOP, to fibroblast growth factor receptor 1. (PMID: 9949182) Popovici C. … Pebusque M.-J. (Blood 1999) 2 3 4 22 64
  2. A complex of two centrosomal proteins, CAP350 and FOP, cooperates with EB1 in microtubule anchoring. (PMID: 16314388) Yan X. … Nigg E.A. (Mol. Biol. Cell 2006) 3 4 22 64
  3. Structure of the N-terminal domain of the FOP (FGFR1OP) protein and implications for its dimerization and centrosomal localization. (PMID: 16690081) Mikolajka A. … Holak T.A. (J. Mol. Biol. 2006) 3 4 22 64
  4. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 46 64
  5. Genome-wide association study for vitiligo identifies susceptibility loci at 6q27 and the MHC. (PMID: 20526339) Quan C. … Zhang X.J. (Nat. Genet. 2010) 3 46 64

Products for FGFR1OP Gene

Sources for FGFR1OP Gene

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