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FGFBP3 Gene

protein-coding   GIFtS: 44
GCID: GC10M093657

Fibroblast Growth Factor Binding Protein 3

(Previous name: chromosome 10 open reading frame 13)
(Previous symbol: C10orf13)
  See related disease
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Fibroblast Growth Factor Binding Protein 31 2     FGF-Binding Protein 32 3
C10orf131 2 3     Chromosome 10 Open Reading Frame 131
FGF-BP32 3     Fibroblast Growth Factor-Binding Protein 32
FGFBP-32 3     

External Ids:    HGNC: 234281   Entrez Gene: 1432822   Ensembl: ENSG000001747217   UniProtKB: Q8TAT23   

Export aliases for FGFBP3 gene to outside databases

Previous GC identifer: GC10M087295


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for FGFBP3 Gene:
FGFBP3 (fibroblast growth factor binding protein 3) is a protein-coding gene. Diseases associated with FGFBP3 include cerebritis. GO annotations related to this gene include fibroblast growth factor binding and heparin binding.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence:
NC_000010.11  NC_018921.2  NT_030059.14  
Regulatory elements:
   Regulatory transcription factor binding sites in the FGFBP3 gene promoter:
         TBP   POU3F2 (N-Oct-5b)   POU3F2 (N-Oct-5a)   POU3F2   E47   MEF-2A   aMEF-2   ATF   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidFGFBP3 promoter sequence
   Search Chromatin IP Primers for FGFBP3

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat FGFBP3


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 10q23.32   Ensembl cytogenetic band:  10q23.32   HGNC cytogenetic band: 10q23.33

FGFBP3 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
FGFBP3 gene location

GeneLoc information about chromosome 10         GeneLoc Exon Structure

GeneLoc location for GC10M093657:  view genomic region     (about GC identifiers)

Start:
93,666,345 bp from pter      End:
93,669,258 bp from pter
Size:
2,914 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
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UniProtKB/Swiss-Prot: FGFP3_HUMAN, Q8TAT2 (See protein sequence)
Recommended Name: Fibroblast growth factor-binding protein 3 precursor  
Size: 258 amino acids; 27590 Da
Subunit: Interacts with FGF1
Secondary accessions: B2RD68 Q8NBN0

Explore the universe of human proteins at neXtProt for FGFBP3: NX_Q8TAT2

Explore proteomics data for FGFBP3 at MOPED

Post-translational modifications: 

  • Glycosylation2 at Thr158
  • Modification sites at PhosphoSitePlus

  • See FGFBP3 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_689642.3  
    ENSEMBL proteins: 
     ENSP00000339067  

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    1 InterPro protein domain:
     IPR010510 FGF1-bd

    Graphical View of Domain Structure for InterPro Entry Q8TAT2

    ProtoNet protein and cluster: Q8TAT2

    UniProtKB/Swiss-Prot: FGFP3_HUMAN, Q8TAT2
    Similarity: Belongs to the fibroblast growth factor-binding protein family


    FGFBP3 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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         Gene Ontology (GO): 2 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0008201heparin binding IDA18669637
    GO:0017134fibroblast growth factor binding IPI18669637
         
    FGFBP3 for ontologies           About GeneDecksing


    Phenotypes:
         1 MGI mutant phenotype (inferred from 1 allele(MGI details for Fgfbp3):
     behavior/neurological 

    FGFBP3 for phenotypes           About GeneDecksing

    Animal Models:
       inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for FGFBP3
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    hsa-mir-335-5p (MIRT018530), hsa-mir-484 (MIRT042123)

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    5 qRT-PCR Assays for microRNAs that regulate FGFBP3:
    hsa-miR-4328 hsa-miR-4272 hsa-miR-129-5p hsa-miR-3921 hsa-miR-450b-5p
    SwitchGear 3'UTR luciferase reporter plasmidFGFBP3 3' UTR sequence
    Inhib. RNA
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    GenScript: all cDNA clones in your preferred vector: FGFBP3 (NM_152429)
    Sino Biological Human cDNA Clone for FGFBP3
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    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat FGFBP3

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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    FGFP3_HUMAN, Q8TAT2: Secreted (Probable)
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    extracellular5
    nucleus1

    Gene Ontology (GO): 1 cellular component term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005576extracellular region IDA18669637

    FGFBP3 for ontologies           About GeneDecksing


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for FGFBP3
    Interactions:

        Search GeneGlobe Interaction Network for FGFBP3

    Gene Ontology (GO): 2 biological process terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0043117positive regulation of vascular permeability IDA18669637
    GO:0045743positive regulation of fibroblast growth factor receptor signaling pathway IGI18669637

    FGFBP3 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for FGFBP3 (FGFP3)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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    REFSEQ mRNAs for FGFBP3 gene: 
    NM_152429.4  

    Unigene Cluster for FGFBP3:

    Fibroblast growth factor binding protein 3
    Hs.466120  [show with all ESTs]
    Unigene Representative Sequence: NM_152429
    1 Ensembl transcript including schematic representation, and UCSC links where relevant:
    ENST00000311575(uc001khq.4)
    miRNA
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    5 qRT-PCR Assays for microRNAs that regulate FGFBP3:
    hsa-miR-4328 hsa-miR-4272 hsa-miR-129-5p hsa-miR-3921 hsa-miR-450b-5p
    SwitchGear 3'UTR luciferase reporter plasmidFGFBP3 3' UTR sequence
    Inhib. RNA
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    OriGene RNAi products in human, mouse, rat for FGFBP3
    Predesigned siRNA for gene silencing in human, mouse, rat FGFBP3
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    Pre-validated RT2 qPCR Primer Assay in human, mouse, rat FGFBP3
      QuantiTect SYBR Green Assays in human, mouse, rat FGFBP3
      QuantiFast Probe-based Assays in human, mouse, rat FGFBP3

    Additional mRNA sequence: 

    AK075410.1 AK315427.1 BC025966.1 DQ503576.1 

    3 DOTS entries:

    DT.91891716  DT.65285978  DT.107127 

    Selected AceView cDNA sequences (see all 34):

    AA193544 BI919084 BC025966 CA419224 BE326521 BE395432 BX441189 BI861803 
    AI567667 BU859249 AI381313 NM_152429 AK075410 AI199575 BM927966 BI199012 
    BE677566 BU845963 BI913654 AA813572 BF515321 AI628573 R61683 BX440581 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    FGFBP3 expression in normal human tissues (normalized intensities)      FGFBP3 embryonic expression: see
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: AGCAATTGCC
    FGFBP3 Expression
    About this image


    FGFBP3 expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database
     selected tissues (see all 5) fully expand
     
     Neural Tube (Nervous System)    fully expand to see all 3 entries
             Mesencephalic Ventricular Zone
     
     Brain (Nervous System)    fully expand to see all 3 entries
             Cerebral Cortex
     
     Skeletal Muscle (Muscoskeletal System)
             Muscle Progenitor Cells Thoracic Ventrolateral Dermomyotome Lip
     
     Somite (Muscoskeletal System)
             Muscle Progenitor Cells Thoracic Ventrolateral Dermomyotome Lip
     
     Spinal Cord (Nervous System)
    FGFBP3 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    FGFBP3 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.466120
        Custom PCR Arrays for FGFBP3
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for FGFBP3

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of chordates.

    Orthologs for FGFBP3 gene from Selected species (see all 9)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Fgfbp31 , 5 fibroblast growth factor binding protein 31, 5 70.97(n)1
    59.45(a)1
      19 (32.01 cM)5
    725141  NM_028263.11  NP_082539.21 
     369175505 
    chicken
    (Gallus gallus)
    Aves FGFBP31 fibroblast growth factor binding protein 3 63.04(n)
    52.17(a)
      101751656  XM_004942386.1  XP_004942443.1 
    lizard
    (Anolis carolinensis)
    Reptilia FGFBP36
    fibroblast growth factor binding protein 3
    35(a)
    1 ↔ 1
    GL343219.1(1184816-1185589)
    tropical clawed frog
    (Xenopus tropicalis)
    Amphibia fgfbp31 fibroblast growth factor binding protein 3 44.85(n)
    35.08(a)
      779638  NM_001078724.1  NP_001072192.1 
    zebrafish
    (Danio rerio)
    Actinopterygii zgc:1654611 zgc:165461 47.81(n)
    33.71(a)
      497419  NM_001100139.1  NP_001093609.1 


    ENSEMBL Gene Tree for FGFBP3 (if available)
    TreeFam Gene Tree for FGFBP3 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for FGFBP3 (see all 102)    About this table    
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 10 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs70871411,2
    C,F,A,H--93665975(+) CCCTGC/TGCATA 1 -- ds500118Minor allele frequency- T:0.17NS EA NA WA CSA 1972
    rs741493141,2
    C,F--93666139(+) TAACTG/AATTAT 1 -- ds50012Minor allele frequency- A:0.08WA 120
    rs1899726801,2
    --93666180(+) TTAGGA/GTGCAA 1 -- ds50010--------
    rs1396792191,2
    C--93666273(+) CACCTC/TGTTAA 1 -- ds50010--------
    rs1825858571,2
    --93666305(+) ACTTCA/CAGTTC 1 -- ds50010--------
    rs111867371,2
    C,F,A,H--93666349(+) ATACAC/TACACA 1 -- ut31 ese319Minor allele frequency- T:0.35NS EA NA WA CSA 2210
    rs741493151,2
    C,F--93666381(+) AAAACA/GTATAT 1 -- ut312Minor allele frequency- G:0.30WA 120
    rs1498567851,2
    --93666385(+) CATATA/CTATAG 1 -- ut310--------
    rs1448324071,2
    --93666399(+) CCCCTC/GCACAT 1 -- ut310--------
    rs122204101,2
    C,F--93666406(+) ACATCC/TGTGGG 1 -- ut31 ese32Minor allele frequency- T:0.12NA EA 240

    HapMap Linkage Disequilibrium report for FGFBP3 (93666345 - 93669258 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 2 variations for FGFBP3:    About this table    
    Variant IDTypeSubtypePubMed ID
    nsv7491CNV Loss18451855
    esv22161CNV Loss19812545

    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing FGFBP3
    DNA2.0 Custom Variant and Variant Library Synthesis for FGFBP3

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    1 disease for FGFBP3:    About MalaCards
    cerebritis


    FGFBP3 for disorders           About GeneDecksing


    Export disorders for FGFBP3 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for FGFBP3 gene integrated from 10 sources:
    (articles sorted by number of sources associating them with FGFBP3)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Signal sequence and keyword trap in silico for selection of full- length human cDNAs encoding secretion or membrane proteins from oligo- capped cDNA libraries. (PubMed id 16303743)1, 2 Otsuki T....Isogai T. (DNA Res. 2005)
    2. The DNA sequence and comparative analysis of human chromosome 10. (PubMed id 15164054)1, 2 Deloukas P.... Rogers J. (Nature 2004)
    3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    4. Effect of FGF-binding protein 3 on vascular permeability. (PubMed id 18669637)1 Zhang W....Wellstein A. (J. Biol. Chem. 2008)
    5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)2 Ota T.... Sugano S. (Nat. Genet. 2004)
    6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
    7. (PubMed id )2 

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 143282 HGNC: 23428 AceView: C10orf13 Ensembl:ENSG00000174721 euGenes: HUgn143282
    ECgene: FGFBP3 H-InvDB: FGFBP3

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for FGFBP3 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for FGFBP3 gene:
    Search GeneIP for patents involving FGFBP3

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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