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FGF3 Gene

protein-coding   GIFtS: 57

GC11M069333
fibroblast growth factor 3 (murine mammary tumor virus integration site (v-int-2) oncogene homolog)
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
(Previous symbol: INT2)
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
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Aliases
FGF-3 3
HBGF-3 1, 2, 3
INT2 2, 3, 5
Descriptions
Fibroblast growth factor 3 2, 3
Heparin-binding growth factor 3 3
INT-2 proto-oncogene protein 2
V-INT2 murine mammary tumor virus integration site oncogene
homolog 2
fibroblast growth factor 3 (murine mammary tumor virus
integration site (v-int-2) oncogene homolog) 2
murine mammary tumor virus integration site 2, mouse 2
oncogene INT2 2
External Ids
HGNC: 36811
Entrez Gene: 22482
UniProtKB: P114873
Ensembl: ENSG000001868957
Search outside databases for aliases for FGF3 gene

Previous GC identifers: GC11U990037 GC11M069397

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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EntrezGene summary for FGF3:
The protein encoded by this gene is a member of the fibroblast growth factor (FGF) family. FGF
family members possess broad mitogenic and cell survival activities and are involved in a variety
of biological processes including embryonic development, cell growth, morphogenesis, tissue
repair, tumor growth and invasion. This gene was identified by its similarity with mouse
fgf3/int-2, a proto-oncogene activated in virally induced mammary tumors in the mouse. Frequent
amplification of this gene has been found in human tumors, which may be important for neoplastic
transformation and tumor progression. Studies of the similar genes in mouse and chicken suggested
the role in inner ear formation. [provided by RefSeq]

UniProtKB/Swiss-Prot: FGF3_HUMAN, P11487
Function: Could be involved in ear development

Gene Wiki entry for FGF3

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
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Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the FGF3 gene  

Entrez Gene cytogenetic band: 11q13   Ensembl cytogenetic band:  11q13.3   HGNC cytogenetic band: 11q13

FGF3 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 11         GeneLoc Exon Structure

GeneLoc location for GC11M069333:     (about GC identifiers)

Start:
69,333,917 bp from pter
End:
69,343,129 bp from pter
Size:
9,213 bases
Orientation:
minus strand
RefSeq DNA sequence:
NC_000011.8  NT_078088.3  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: FGF3_HUMAN, P11487 (See protein sequence)
Recommended Name: INT-2 proto-oncogene protein precursor  
Size: 239 amino acids; 26887 Da
Secondary accessions: Q0VG69

REFSEQ proteins: NP_005238.1  

ENSEMBL proteins: 
ENSP00000334122 


Human Recombinant Proteins 
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Browse Purified and Recombinant Proteins at Millipore
Browse Human Recombinant Proteins at Sigma-Aldrich  
R&D Systems Recombinant & Natural Proteins for FGF3 (FGF-3)
Browse recombinant and purified proteins available from Enzo Life Sciences
Recombinant Proteins from Abcam (FGF3)
Browse Abnova for Human Recombinant Proteins
                Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 

1 Gene Ontology (GO) cellular component term (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0005576 extracellular region TAS2470007
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Antibodies for FGF3: 
Invitrogen Antibodies for FGF3
Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
Sigma-Aldrich Antibodies for FGF3
R&D Systems Antibodies for FGF3 (FGF-3)
Antibodies from Abcam (FGF3), each with their AbpromiseSM
Browse Abnova for Monoclonal and Polyclonal Antibodies
Search Novus for antibodies for FGF3

Assays for FGF3: 
Browse Invitrogen for biochemical assays
Browse Kits and Assays available from Millipore
Browse R&D Systems for biochemical assays
Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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2 InterPro domains/families:
 IPR002348 IL1_HBGF
 IPR002209 GF_heparin_bd


   GeneDecks  FGF3 for the domains selected above  
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Graphical View of Domain Structure for InterPro Entry P11487

ProtoNet protein and cluster: P11487

2 Blocks protein families:
IPB002209 Heparin binding growth factor family signature
IPB002348 IL1/HBGF family signature


UniProtKB/Swiss-Prot: FGF3_HUMAN, P11487
Similarity: Belongs to the heparin-binding growth factors family

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (FGF3)
Browse for Gene Knock-down Tools from Millipore
Browse Abnova for Chimera RNAi Products
              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005247

              Applied Biosystems Silencer® siRNAs for FGF3

              Sigma-Aldrich siRNA and siRNA Panels for FGF3  
                     Sigma-Aldrich shRNA for FGF3  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Clones:Browse Clone Ranger at Invitrogen for clones
Browse Clones for the Expression of Recombinant Proteins Available from Millipore
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_005247
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_005247
                                 untagged cDNA clone in CMV expression vector: NM_005247 

Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
              OriGene genome-wide validated SYBR primer pairs: NM_005247

UniProtKB/Swiss-Prot: FGF3_HUMAN, P11487
Function: Could be involved in ear development

Genatlas biochemistry entry for FGF3:
fibroblast growth factor 3,basic,expressed during embryonic development

11 MGI mutant phenotypes (inferred from 4 alleles(MGI details for Fgf3):

behavior/neurologicalembryogenesisgrowth/sizehearing/vestibular/earlethality-postnatal
lethality-prenatal/perinatallife span-post-weaning/aginglimbs/digits/tailnervous systemreproductive system
skeleton

2 Gene Ontology (GO) molecular function terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0005515 protein binding IPI16263090
GO:0008083 growth factor activity TAS2470007
About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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1 Invitrogen iPath™ Online BioAtlas - Pathway for FGF3 (Maps provided by GeneGo):
 FGF-family signaling

   GeneDecks  FGF3 for the pathways selected above  
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1 Millipore Pathway for FGF3
 Development FGF-family signaling

   GeneDecks  FGF3 for the pathways selected above  
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4 Sigma-Aldrich "Your Favorite Gene" Pathways for  FGF3  (Your Favorite Gene powered by Ingenuity) 
 Actin Cytoskeleton Signaling
 Bladder Cancer Signaling
 FGF Signaling
 Clathrin-mediated Endocytosis

   GeneDecks  FGF3 for the pathways selected above  
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4 Kegg Pathways  (Kegg details for FGF3):
 hsa04010 MAPK signaling pathway
 hsa04810 Regulation of actin cytoskeleton
 hsa05200 Pathways in cancer
 hsa05218 Melanoma

   GeneDecks  FGF3 for the pathways selected above  
About GeneDecksing
 Gene Network CentralTM Interacting Genes and Proteins Network for  FGF3 


5/61 Interacting proteins for FGF3 (ENSP000003341223) via UniProtKB, MINT, and/or STRING (see all 61 )
InteractantInteraction Details
GeneCardExternal ID(s)
FGFR1ENSP000003113373STRING (score=.999)
FGFR2ENSP000003330903STRING (score=.999)
FGFR3ENSP000003541703STRING (score=.999)
FGFR4ENSP000003664123STRING (score=.999)
EBNA1BP2ENSP000002360513STRING (score=.971)
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5/7 Gene Ontology (GO) biological process terms (links to tree view) (see all 7 ):

GO IDQualified GO termEvidencePubMed IDs
GO:0001759 induction of an organ IEA--
GO:0007165 signal transduction TAS2470007
GO:0007267 cell-cell signaling TAS2470007
GO:0008283 cell proliferation IEA--
GO:0008543 fibroblast growth factor receptor signaling pathway EXP17133345
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(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Browse drugs & compounds from Enzo Life Sciences
Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for FGF3
3 Novoseek chemical compound relationships for FGF3 gene
Compound   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
bamhi 29.72 2 1975511 (1), 1362493 (1)
oligonucleotide 0.00 1 8559598 (1)
steroid 0.00 1 1350457 (1)
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(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (FGF3)
Browse for Gene Knock-down Tools from Millipore
Browse Abnova for Chimera RNAi Products
              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005247

              Sigma-Aldrich siRNA and siRNA Panels for FGF3  
                     Sigma-Aldrich shRNA for FGF3  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Applied Biosystems Silencer® siRNAs: 

NM_005247  

REFSEQ mRNAs for FGF3 gene: 

NM_005247.2   

Applied Biosystems TaqMan ® Gene Expression Assays: 

NM_005247  

              OriGene GFP tagged cDNA clone in CMV expression vector: NM_005247
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_005247
                                 untagged cDNA clone in CMV expression vector: NM_005247 

Additional cDNA sequence: BC113739.1 

1 DOTS entry:

DT.95313645 

1 AceView cDNA sequence:

NM_005247 

highest scoring ESTs for FGF3:

NM_005247 BC113739 H45899 X14445 

Unigene Cluster for FGF3:

Fibroblast growth factor 3 (murine mammary tumor virus integration site (v-int-2) oncogene homolog)
Hs.37092
Unigene Representative Sequence: NM_005247


GeneLoc Exon Structure

1 Ensembl transcript including schematic representation:
ENST00000334134  
(Experimental results according to 1GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
About This Section

FGF3 expression in normal and diseased human tissues

 Applied Biosystems TaqMan ® Gene Expression Assays for FGF3

1 / 2 / 3

3 probe-sets matching FGF3 gene


Affymetrix
probe-set
Array  GeneAnnot data GeneNote data GeneTide data
# genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank

1855_at2, 3 U95-A 2 1.00 0.97 1.00 1.00 X14445 0.20 1.00 0.72 1

214571_at2, 3 U133-A 1 1.00 1.00 -- -- NM_005247 0.60 1.00 0.82 1

214571_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
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Data from (Publications) and GNF BioGPS
    About these images
About these images

CGAP SAGE TAG: --

SOURCE GeneReport for Unigene cluster: Hs.37092
(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section


Orthologs for FGF3 gene from 5/7 species (see all 7 )
Organism Gene Locus Description Human
Similarity
NCBI accessions
chimpanzee
(Pan troglodytes)
FGF31   -- fibroblast growth factor 3 (murine mammary tumor virus more 99.3(n)
98.74(a)
466693  XM_522092.2  XP_522092.2 
cow
(Bos taurus)
FGF31   -- fibroblast growth factor 3 (murine mammary tumor virus more 87.13(n)
88.37(a)
618481  XM_870814.2  XP_875907.2 
rat
(Rattus norvegicus)
Fgf31   -- fibroblast growth factor 3 85.41(n)
90.78(a)
170633  NM_130817.1  NP_570830.1 
mouse
(Mus musculus)
Fgf31, 5 7 (72.40 cM)5
fibroblast growth factor 31, 5 84.33(n)1
89.4(a)1
141741  NM_008007.11  NP_032033.11 
 AK0210625  AK1339015  (see all 13)
chicken
(Gallus gallus)
FGF31   -- fibroblast growth factor 3 (murine mammary tumor virus more 69.81(n)
78.3(a)
396267  NM_205327.1  NP_990658.1 
About this table        Species with no ortholog for FGF3

ENSEMBL Gene Tree for FGF3
(Paralogs according to 1HomoloGene
and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
About This Section

Paralogs for FGF3 gene
FGF12  FGF22  

(According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section


10/88 NCBI SNPs in FGF3 are shown (see all 88 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 48)
ABGenomic DataTranscription DataAllele Frequencies
SNP IDValidChr 11 posSequenceRecsAA
Chg
TypeMoreRecsAllele
freq
PopTotal
sample
More
------------
rs7341021,2
A,C,F,H69333663(-) TGTGTG/ACGTGG 1 -- ng515Minor allele frequency- A:0.07EU EA WA 592
rs116025121,2
A,F,H69333464(+) AGTAAC/ACTCTC 1 -- ng513Minor allele frequency- A:0.40EA WA 262
rs39268841,2
A,C,F69345004(-) GGTGTA/GGAGCA 1 -- ng311Minor allele frequency- G:0.42EA 172
--
rs79261731,2
A,C69343370(+) GCGGCA/GGGGAG 1 -- ng310--------
--
rs123646511,2
A69343873(+) GGGAAG/TGGGTG 1 -- ng310--------
--
rs118256371,2
C69344993(+) CATGCA/CCCTCC 1 -- ng310--------
--
rs71102211,2
C69334456(-) CACACT/AGAAGT 1 L/Q mis1 ese31Minor allele frequency- A:0.00EA 172
rs354209921,2
F69334566(+) GACACC/TGTCCG 1 T/T syn11Minor allele frequency- T:0.04NA 72
rs107968561,2
A,C,F,H69339614(+) CAGCGC/TCCTCC 1 -- int1 trp34Minor allele frequency- T:0.48EU EA WA 418
rs18930471,2
A,C,F,H69335653(+) GGCACG/ATGATC 1 -- int18Minor allele frequency- A:0.42EU EA WA NA 773
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HapMap Linkage Disequilibrium images for FGF3 (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
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OMIM: 164950   disorders: 610706  

UniProtKB/Swiss-Prot: FGF3_HUMAN, P11487

  • Defects in FGF3 are a cause of congenital deafness with inner ear agenesis microtia and
    microdontia [MIM:610706]. This disorder consits of a unique autosomal recessive syndrome
    characterized by type I microtia, microdontia, and profound congenital deafness associated with a
    complete absence of inner ear structures (Michel aplasia)
  • 10/32 Novoseek disease relationships for FGF3 gene (see all 32 )

    Disease   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    hypochondroplasia 70.04 2 11057021 (1), 16020314 (1)
    parathyroid diseases 51.25 5 11751068 (2), 9597922 (1)
    mammary tumor 47.94 6 11095248 (1), 1317463 (1), 7679760 (1), 8559598 (1)
    breast cancer 46.16 26 10619258 (2), 7740653 (2), 8585979 (2), 1362493 (2) (see all 17)
    tumors 43.35 42 9316622 (2), 17198565 (2), 12201868 (2), 11568558 (2) (see all 26)
    carcinoma squamous cell 42.97 3 9858651 (1), 2193294 (1), 7685625 (1)
    allelic loss 42.17 1 8509434 (1)
    achondroplasia 41.91 1 11057021 (1)
    breast carcinoma 39.71 9 8100712 (2), 1975511 (1), 1362493 (1), 9329619 (1) (see all 6)
    retinoblastoma 31.44 2 9296509 (1), 16020314 (1)
    About this table

    Human Gene Mutation Database: FGF3
    Tumor Gene Database: FGF3
    Breast Cancer Gene Database: FGF3

    (Possibly Related Articles in Doctor's Guide)
    About This Section

      --

    (in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
    About This Section

    10/152 PubMed articles for FGF3 gene (see all 152 ):
    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section

     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)
    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
    About This Section

    Entrez Gene: 2248 HGNC: 3681 AceView: FGF3 Ensembl:ENSG00000186895 euGenes: HUgn2248
    ECgene: FGF3 H-InvDB: FGF3
    (According to HUGE)
    About This Section

      --
    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section

    NameDescription
    ATLAS Chromosomes in Cancer entry for FGF3 Genetics and Cytogenetics in Oncology and Haematology
    (Available from WIS Yeda, Salk, Tufts)
    About This Section

      --
    (Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
    Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
    Enzo Life Sciences, and/or Tocris Bioscience)
    About This Section



    Products for FGF3:
     TaqMan ® Gene Expression Assays
     TaqMan ® Genotyping Assays
      Free SNP selection tool



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     Predesigned and custom siRNAs for FGF3 Antibodies for FGF3
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     "Your Favorite Gene" Pathwaysfeedback


      
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