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Aliases & Descriptions for FGF3
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| FGF-3 3 | | HBGF-3 1, 2, 3 | | INT2 2, 3, 5 |
| | | Descriptions |
|---|
| Fibroblast growth factor 3 2, 3 | | Heparin-binding growth factor 3 3 | | INT-2 proto-oncogene protein 2 | V-INT2 murine mammary tumor virus integration site oncogene homolog 2 | fibroblast growth factor 3 (murine mammary tumor virus integration site (v-int-2) oncogene homolog) 2 | | murine mammary tumor virus integration site 2, mouse 2 | | oncogene INT2 2 |
|
| | Search outside databases for aliases for FGF3 genePrevious GC identifers: GC11U990037 GC11M069397 |
Summaries for FGF3(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for FGF3: The protein encoded by this gene is a member of the fibroblast growth factor (FGF) family. FGF family members possess broad mitogenic and cell survival activities and are involved in a variety of biological processes including embryonic development, cell growth, morphogenesis, tissue repair, tumor growth and invasion. This gene was identified by its similarity with mouse fgf3/int-2, a proto-oncogene activated in virally induced mammary tumors in the mouse. Frequent amplification of this gene has been found in human tumors, which may be important for neoplastic transformation and tumor progression. Studies of the similar genes in mouse and chicken suggested the role in inner ear formation. [provided by RefSeq] UniProtKB/Swiss-Prot: FGF3_HUMAN, P11487Function: Could be involved in ear developmentGene Wiki entry for FGF3 |
Genomic Location for FGF3
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the FGF3 gene 
Entrez Gene cytogenetic band: 11q13 Ensembl cytogenetic band: 11q13.3 HGNC cytogenetic band: 11q13FGF3 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 11 GeneLoc Exon Structure GeneLoc location for GC11M069333:
(about GC identifiers)
Start:
|
69,333,917 bp from pter |
End:
|
69,343,129 bp from pter |
Size:
|
9,213 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000011.8 NT_078088.3
| Proteins for FGF3
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: FGF3_HUMAN, P11487 (See
protein sequence)Recommended Name: INT-2 proto-oncogene protein precursor Size: 239 amino acids; 26887 Da
Secondary accessions: Q0VG69REFSEQ proteins: NP_005238.1
ENSEMBL proteins: ENSP00000334122
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
1 Gene Ontology (GO) cellular component term (links to tree view): About this table
Antibodies for FGF3: Assays for FGF3: | Protein
Domains/ Families for FGF3(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P11487
ProtoNet protein and cluster: P11487 2 Blocks protein families: IPB002209 Heparin binding growth factor family signature IPB002348 IL1/HBGF family signature
UniProtKB/Swiss-Prot: FGF3_HUMAN, P11487Similarity: Belongs to the heparin-binding growth factors family | Gene Function for FGF3
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005247
Applied Biosystems Silencer® siRNAs for FGF3
Sigma-Aldrich siRNA and siRNA Panels for FGF3  Sigma-Aldrich shRNA for FGF3  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_005247                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_005247                                  untagged cDNA clone in CMV expression vector: NM_005247 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_005247
UniProtKB/Swiss-Prot: FGF3_HUMAN, P11487Function: Could be involved in ear developmentGenatlas biochemistry entry for FGF3:fibroblast growth factor 3,basic,expressed during embryonic development11 MGI mutant phenotypes (inferred from 4 alleles ) (MGI details for Fgf3):
2 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for FGF3
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
4 Sigma-Aldrich "Your Favorite Gene" Pathways for FGF3 (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for FGF3 
5/61 Interacting proteins for FGF3 (ENSP000003341223) via UniProtKB, MINT, and/or STRING (see all 61
)About this table
5/7 Gene Ontology (GO) biological process terms (links to tree view) (see all 7
): About this table
|
Drugs & Compounds for FGF3(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for FGF3 3 Novoseek chemical compound relationships for FGF3 gene
About this table
|
Transcripts for FGF3(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005247
Sigma-Aldrich siRNA and siRNA Panels for FGF3  Sigma-Aldrich shRNA for FGF3  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_005247 REFSEQ mRNAs for FGF3 gene: NM_005247.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_005247               OriGene GFP tagged cDNA clone in CMV expression vector: NM_005247                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_005247                                  untagged cDNA clone in CMV expression vector: NM_005247  Additional cDNA sequence: BC113739.1 1 DOTS entry: DT.95313645 1 AceView cDNA sequence:NM_005247
highest scoring ESTs for FGF3:NM_005247 BC113739 H45899 X14445 Unigene Cluster for FGF3: Fibroblast growth factor 3 (murine mammary tumor virus integration site (v-int-2) oncogene homolog) Hs.37092 Unigene Representative Sequence: NM_005247
GeneLoc Exon Structure
1 Ensembl transcript including schematic representation: ENST00000334134
|
Expression for FGF3
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| FGF3 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for FGF3
1 / 2 / 3 3 probe-sets matching FGF3 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: --
SOURCE GeneReport for Unigene cluster: Hs.37092
|
Orthologs for FGF3
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for FGF3 gene from 5/7 species (see all 7
)
About this table Species with no ortholog for FGF3
ENSEMBL Gene Tree for FGF3 | Paralogs for FGF3(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for FGF3 gene
- FGF12 FGF22
|
SNPs/Variants for FGF3(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for FGF3 (up to first 250kb)
|
Disorders & Mutations for FGF3
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 164950 disorders: 610706 UniProtKB/Swiss-Prot: FGF3_HUMAN, P11487
Defects in FGF3 are a cause of congenital deafness with inner ear agenesis microtia and microdontia [MIM:610706]. This disorder consits of a unique autosomal recessive syndrome characterized by type I microtia, microdontia, and profound congenital deafness associated with a complete absence of inner ear structures (Michel aplasia)10/32 Novoseek disease relationships for FGF3 gene (see all 32
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| hypochondroplasia |
70.04 |
2 |
11057021 (1), 16020314 (1) |
| parathyroid diseases |
51.25 |
5 |
11751068 (2), 9597922 (1) |
| mammary tumor |
47.94 |
6 |
11095248 (1), 1317463 (1), 7679760 (1), 8559598 (1) |
| breast cancer |
46.16 |
26 |
10619258 (2), 7740653 (2), 8585979 (2), 1362493 (2) (see all 17) |
| tumors |
43.35 |
42 |
9316622 (2), 17198565 (2), 12201868 (2), 11568558 (2) (see all 26) |
| carcinoma squamous cell |
42.97 |
3 |
9858651 (1), 2193294 (1), 7685625 (1) |
| allelic loss |
42.17 |
1 |
8509434 (1) |
| achondroplasia |
41.91 |
1 |
11057021 (1) |
| breast carcinoma |
39.71 |
9 |
8100712 (2), 1975511 (1), 1362493 (1), 9329619 (1) (see all 6) |
| retinoblastoma |
31.44 |
2 |
9296509 (1), 16020314 (1) |
About this table
Human Gene Mutation Database: FGF3 Tumor Gene Database: FGF3 Breast Cancer Gene Database: FGF3
|
Medical News for FGF3(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for FGF3 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/152 PubMed articles for FGF3 gene (see all 152
):- Homozygous mutations in fibroblast growth factor 3 are associated with a new form of syndromic deafness characterized by inner ear agenesis, microtia, and microdontia. (PubMed id 17236138)1, 3, 4 Tekin M....Akar N. (2007)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Sequence organization of the human int-2 gene and its expression in teratocarcinoma cells. (PubMed id 2470007)3, 4 Brooks S.... Peters G. (1989)
- Fibroblast growth factor 3, a protein with a dual subcellular fate, is interacting with human ribosomal protein S2. (PubMed id 16263090)1, 3 Antoine M....Kiefer P. (2005)
- Homozygous FGF3 mutations result in congenital deafness with inner ear agenesis, microtia, and microdontia. (PubMed id 18435799)1, 3 Tekin M....Duman D. (2008)
- Syndromic congenital sensorineural deafness, microtia and microdontia resulting from a novel homoallelic mutation in fibroblast growth factor 3 (FGF3). (PubMed id 18701883)1, 3 Alsmadi O....Al-Sayed M. (2009)
- Regulation of FGF-3 gene expression in tumorigenic and non-tumorigenic clones of a human colon carcinoma cell line. (PubMed id 10749884)1, 3 Galdemard C....Lavialle C. (2000)
- SNP genome scanning localizes oto-dental syndrome to chromosome 11q13 and microdeletions at this locus implicate FGF3 in dental and inner-ear disease and FADD in ocular coloboma. (PubMed id 17656375)1, 3 Gregory-Evans C.Y....Gregory-Evans K. (2007)
- Impaired FGF signaling contributes to cleft lip and palate. (PubMed id 17360555)1, 3 Riley B.M....Murray J.C. (2007)
- A genome-wide association study identifies protein quantitative trait loci (pQTLs). (PubMed id 18464913)3 Melzer D....Ferrucci L. (2008)
|
Search for FGF3
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing FGF3
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing FGF3
(According to HUGE)
About This Section
| -- |
Specialized Databases showing FGF3(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for FGF3(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for FGF3:

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