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Aliases & Descriptions for FGF2
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| BFGF 2, 3 | | FGFB 2, 3, 5 | | HBGF-2 2, 3 | | prostatropin 2 |
| | | Descriptions |
|---|
| Basic fibroblast growth factor 3 | | basic fibroblast growth factor bFGF 2 | | fibroblast growth factor 2 2 | | fibroblast growth factor 2 (basic) 2 | | heparin-binding growth factor 2 2 |
|
| | Search outside databases for aliases for FGF2 genePrevious GC identifers: GC04P124660 GC04P124141 GC04P124206 GC04P124105 |
Summaries for FGF2(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for FGF2: The protein encoded by this gene is a member of the fibroblast growth factor (FGF) family. FGF family members bind heparin and possess broad mitogenic and angiogenic activities. This protein has been implicated in diverse biological processes, such as limb and nervous system development, wound healing, and tumor growth. The mRNA for this gene contains multiple polyadenylation sites, and is alternatively translated from non-AUG (CUG) and AUG initiation codons, resulting in five different isoforms with distinct properties. The CUG-initiated isoforms are localized in the nucleus and are responsible for the intracrine effect, whereas, the AUG-initiated form is mostly cytosolic and is responsible for the paracrine and autocrine effects of this FGF. [provided by RefSeq] UniProtKB/Swiss-Prot: FGF2_HUMAN, P09038Function: The heparin-binding growth factors are angiogenic agents in vivo and are potent mitogens for a variety of cell types in vitro. There are differences in the tissue distribution and concentration of these 2 growth factorsGene Wiki entry for FGF2 (Basic_fibroblast_growth_factor) |
Genomic Location for FGF2
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the FGF2 gene 
Entrez Gene cytogenetic band: 4q26-q27 Ensembl cytogenetic band: 4q27 HGNC cytogenetic band: 4q26FGF2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 4 GeneLoc Exon Structure GeneLoc location for GC04P124027:
(about GC identifiers)
Start:
|
123,967,313 bp from pter |
End:
|
124,038,840 bp from pter |
Size:
|
71,528 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000004.10 NT_016354.18
| Proteins for FGF2
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: FGF2_HUMAN, P09038 (See
protein sequence)Recommended Name: Heparin-binding growth factor 2 precursor Size: 210 amino acids; 22623 Da
Subunit: Monomer. Interacts with CSPG4 and FGFBP1. Found in a complex with FGFBP1, FGF1 and FGF2
Miscellaneous: This protein binds heparin more strongly than does aFGF
Sequence caution: Sequence=AAB21432.2; Type=Miscellaneous discrepancy; Note=Unusual initiator. The initiator methionine is coded by a non-canonical CTG leucine codon;
PDB structures from and Proteopedia :1BAS (3D)
 1BFB (3D)
 1BFC (3D)
 1BFF (3D)
 1BFG (3D)
 1BLA (3D)
 1BLD (3D)
 1CVS (3D)
 1EV2 (3D)
 1FGA (3D)
 1FQ9 (3D)
 1II4 (3D)
 1IIL (3D)
 2BFH (3D)
 2FGF (3D)
 4FGF (3D)
 
Secondary accessions: A4LBB8 O00527 P78443 Q16443 Q5PY50 Q7KZ11 Q7KZ72 Q9UC54Alternative initiation: 3 isoforms: P09038-1 P09038-2 P09038-3 Post-translational modifications:
Several N-termini starting at positions 48, 54, 47 and 65 have been identified by direct sequencing1
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_001997.5
ENSEMBL proteins: ENSP00000377879 ENSP00000264498
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
2 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for FGF2: Assays for FGF2: | Protein
Domains/ Families for FGF2(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| ProtoNet protein and cluster: P09038 2 Blocks protein families: IPB002209 Heparin binding growth factor family signature IPB002348 IL1/HBGF family signature
UniProtKB/Swiss-Prot: FGF2_HUMAN, P09038Similarity: Belongs to the heparin-binding growth factors family | Gene Function for FGF2
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
| Inhib. RNA: |  | Invitrogen RNAi Products for gene knock-down (FGF2) | |  | Millipore RNAi Products for the Analysis of FGF2 Gene knock-down | |  | Abnova Chimera RNAi Products for Gene knock-down (FGF2) |               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002006
Applied Biosystems Silencer® siRNAs for FGF2
Sigma-Aldrich siRNA and siRNA Panels for FGF2  Sigma-Aldrich shRNA for FGF2  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_002006                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002006                                  untagged cDNA clone in CMV expression vector: NM_002006 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_002006
UniProtKB/Swiss-Prot: FGF2_HUMAN, P09038Function: The heparin-binding growth factors are angiogenic agents in vivo and are potent mitogens for a variety of cell types in vitro. There are differences in the tissue distribution and concentration of these 2 growth factorsGenatlas biochemistry entry for FGF2:fibroblast growth factor 2,basic,multifunctional protein,144kDa,expressed by brain,retina cartilage,inducer of anteroposterior neural pattern,essential for FGF8 and FGF10 reciprocal regulation loop in limb induction in mouse. FGF2 expression is under the control of an antisense transcript (see NUDT6)14 MGI mutant phenotypes (inferred from 6 alleles ) (MGI details for Fgf2):
3 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for FGF2
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
5/6 Sigma-Aldrich "Your Favorite Gene" Pathways for FGF2 (Your Favorite Gene powered by Ingenuity) (see all 6
) 
Gene Network CentralTM Interacting Genes and Proteins Network for FGF2 
5/174 Interacting proteins for FGF2 (P090381, 2 ENSP000002644983) via UniProtKB, MINT, and/or STRING (see all 174
)About this table
5/23 Gene Ontology (GO) biological process terms (links to tree view) (see all 23
): About this table
|
Drugs & Compounds for FGF2(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for FGF2 10/23 Novoseek chemical compound relationships for FGF2 gene (see all 23
)
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| heparan sulfate |
80.76 |
392 |
18036796 (6), 11956326 (6), 17437011 (4), 1587820 (4) (see all 99) |
| matrigel |
79.90 |
113 |
16374069 (5), 16962729 (3), 17518619 (3), 2066361 (3) (see all 72) |
| cmdb7 |
70.46 |
4 |
9662260 (1), 11514538 (1), 12838326 (1), 11299764 (1) |
| thymidine |
67.81 |
160 |
7645636 (5), 8500333 (2), 11998867 (2), 8544018 (2) (see all 99) |
| tyrosine |
66.86 |
271 |
8304491 (4), 10930570 (4), 12197473 (3), 8780517 (3) (see all 99) |
| pd 173074 |
65.60 |
3 |
14598292 (3) |
| su5402 |
65.45 |
9 |
15654655 (1), 16179608 (1), 15955829 (1), 15973728 (1) (see all 7) |
| trafermin |
64.80 |
6 |
17591067 (2), 12403958 (1), 15891629 (1), 15779638 (1) (see all 5) |
| tgf beta1 |
63.81 |
125 |
18442933 (7), 8602397 (6), 16135988 (5), 17381064 (5) (see all 41) |
| pd 98,059 |
59.55 |
29 |
12151059 (2), 15631803 (2), 9442043 (1), 10915907 (1) (see all 23) |
About this table
|
Transcripts for FGF2(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
| Inhib. RNA: |  | Invitrogen RNAi Products for gene knock-down (FGF2) | |  | Millipore RNAi Products for the Analysis of FGF2 Gene knock-down | |  | Abnova Chimera RNAi Products for Gene knock-down (FGF2) |               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002006
Sigma-Aldrich siRNA and siRNA Panels for FGF2  Sigma-Aldrich shRNA for FGF2  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_002006 REFSEQ mRNAs for FGF2 gene: NM_002006.4
Applied Biosystems TaqMan ® Gene Expression Assays: NM_002006               OriGene GFP tagged cDNA clone in CMV expression vector: NM_002006                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002006                                  untagged cDNA clone in CMV expression vector: NM_002006  Additional cDNA sequence: AB451321.1 AB451450.1 AY820133.1 BC111737.1 BC118573.1 BC118654.1 J04513.1 L31408.1 M17599.1 M27968.1 S47380.1 4 DOTS entries: DT.416573 DT.121251235 DT.75103181 DT.100712482 24/76 AceView cDNA sequences (see all 76
):BG200726 BU619706 AI420564 NM_198041 BG197239 AI492978 AA953379 AI479705 BQ434362 BG190638 AI401057 BM970451 NM_007083 BG214454 AA226913 BG197240 AI417721 BF739878 BG182217 BG386740 AA868801 BG212846 BG192658 CB148889
highest scoring ESTs for FGF2:J04513 M27968 AA037148 AA194989 AA195118 AA195208 AA216658 AA218562 AA256481 AA256823 Unigene Cluster for FGF2: Fibroblast growth factor 2 (basic) Hs.284244 [show with all ESTs]Unigene Representative Sequence: NM_002006
GeneLoc Exon Structure
2 Ensembl transcripts including schematic representations: ENST00000394350
ENST00000264498
|
Expression for FGF2
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| FGF2 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for FGF2
1 / 2 / 3 7 probe-sets matching FGF2 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: AGTAGTATGA
SOURCE GeneReport for Unigene cluster: Hs.284244
Expression variation in blood from EXPOLDB for FGF2 UniProtKB/Swiss-Prot: FGF2_HUMAN, P09038Tissue specificity: Expressed in granulosa and cumulus cells |
Orthologs for FGF2
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for FGF2 gene from 5/6 species (see all 6
)
About this table Species with no ortholog for FGF2
ENSEMBL Gene Tree for FGF2 | Paralogs for FGF2(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for FGF2 gene
- FGF32 FGF12
|
SNPs/Variants for FGF2(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for FGF2 (up to first 250kb)
|
Disorders & Mutations for FGF2
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 134920
10/96 Novoseek disease relationships for FGF2 gene (see all 96
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| neovascularization |
82.22 |
172 |
11437330 (4), 8988045 (2), 12953927 (2), 17299994 (2) (see all 99) |
| tumors |
72.02 |
1496 |
11587697 (6), 8988054 (6), 11196179 (6), 12759248 (5) (see all 99) |
| corneal neovascularization |
61.94 |
30 |
16672771 (3), 8927305 (3), 1289616 (2), 12122002 (1) (see all 16) |
| solid tumor |
60.07 |
56 |
11297245 (2), 11248324 (2), 9369936 (2), 11964077 (2) (see all 31) |
| metastasis |
57.42 |
195 |
10987309 (4), 10964050 (3), 8543386 (3), 19080429 (3) (see all 99) |
| necrosis |
56.95 |
386 |
10817565 (2), 12759248 (2), 8334230 (2), 11371962 (2) (see all 99) |
| glioma |
54.98 |
202 |
16723715 (6), 9010219 (6), 17562265 (6), 1964181 (5) (see all 73) |
| melanoma |
52.90 |
307 |
9372243 (6), 16685268 (5), 17214848 (5), 1516057 (5) (see all 99) |
| craniosynostosis |
50.61 |
6 |
15389579 (1), 9310332 (1), 18067853 (1), 10930313 (1) |
| kaposi sarcoma |
49.93 |
27 |
8728040 (2), 7935812 (2), 9456251 (2), 2199583 (2) (see all 13) |
About this table
Genetic Association Database: FGF2 Human Genome Epidemiology Navigator: FGF2 (10 documents)
|
Medical News for FGF2(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for FGF2 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/3166 PubMed articles for FGF2 gene (see all 3166
):- Identification of the fibroblast growth factor (FGF)-interacting domain in a secreted FGF-binding protein by phage display. (PubMed id 16257968)1, 3, 4 Xie B.... Wellstein A. (2006)
- Structural basis for fibroblast growth factor receptor 2 activation in Apert syndrome. (PubMed id 11390973)1, 3, 4 Ibrahimi O.A....Mohammadi M. (2001)
- Enhancement of fibroblast growth factor (FGF) activity by an FGF- binding protein. (PubMed id 11509569)1, 3, 4 Tassi E.... Wellstein A. (2001)
- Genetic variation in the promoter region of the basic fibroblast growth factor gene. (PubMed id 12590983)3, 6 Beranek M....Vacha J. (2003)
- High-affinity binding of basic fibroblast growth factor and platelet- derived growth factor-AA to the core protein of the NG2 proteoglycan. (PubMed id 10358027)3, 4 Goretzki L.... Stallcup W.B. (1999)
- Assignment1 of the human basic fibroblast growth factor gene FGF2 to chromosome 4 band q26 by radiation hybrid mapping. (PubMed id 9925931)2, 3 Kim H.S. (1998)
- High-resolution solution structure of basic fibroblast growth factor determined by multidimensional heteronuclear magnetic resonance spectroscopy. (PubMed id 8885834)3, 4 Moy F.J.... Powers R. (1996)
- Refinement of the structure of human basic fibroblast growth factor at 1.6-A resolution and analysis of presumed heparin binding sites by selenate substitution. (PubMed id 7691311)3, 4 Eriksson A.E.... Matthews B.W. (1993)
- Reverse transcription with nested polymerase chain reaction shows expression of basic fibroblast growth factor transcripts in human granulosa and cumulus cells from in vitro fertilisation patients. (PubMed id 1417798)3, 4 Watson R....Thomas E.J. (1992)
- Crystal structure of basic fibroblast growth factor at 1.6-A resolution. (PubMed id 1769963)3, 4 Ago H.... Katsube Y. (1991)
|
Search for FGF2
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing FGF2
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing FGF2
(According to HUGE)
About This Section
| -- |
Specialized Databases showing FGF2(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| Licensable Technologies for FGF2 gene:
| Services for FGF2(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for FGF2:

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Incremental update: 13 Oct 2009
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