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Aliases for FGF14-IT1 Gene

Subcategory (RNA class) for FGF14-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FGF14-IT1 Gene

  • FGF14 Intronic Transcript 1 2 3 5
  • FGF14 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for FGF14-IT1 Gene

Previous GeneCards Identifiers for FGF14-IT1 Gene

  • GC13M102946

Summaries for FGF14-IT1 Gene

GeneCards Summary for FGF14-IT1 Gene

FGF14-IT1 (FGF14 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FGF14-IT1 Gene

Genomics for FGF14-IT1 Gene

Regulatory Elements for FGF14-IT1 Gene

Enhancers for FGF14-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13F102457 0.8 ENCODE 11.3 -63.0 -63017 0.1 ELF3 CTCF PKNOX1 TEAD4 MAX ZNF644 RAD21 YY1 TEAD3 RELA FGF14 FGF14-IT1 FGF14-AS1 GC13M102485
GH13F102355 0.2 ENCODE 10.8 +39.1 39094 0.2 JUNB FGF14-IT1 FGF14 FGF14-AS1 GC13P102315
GH13F102285 0.7 ENCODE 8.4 +108.0 108035 1.7 JUN CEBPB EP300 RAD21 YY1 JUND ATF3 CEBPA FOS ZBTB33 FGF14-IT1 GC13M102249 ENSG00000279702
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around FGF14-IT1 on UCSC Golden Path with GeneCards custom track

Promoters for FGF14-IT1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000151640 18 1799 HDAC1 TBL1XR1 ZNF76 SIN3A BMI1 RAD21 ZBTB40 ETS1 YY1 ELK1

Genomic Location for FGF14-IT1 Gene

Chromosome:
13
Start:
102,292,320 bp from pter
End:
102,394,519 bp from pter
Size:
102,200 bases
Orientation:
Minus strand

Genomic View for FGF14-IT1 Gene

Genes around FGF14-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FGF14-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FGF14-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FGF14-IT1 Gene

Proteins for FGF14-IT1 Gene

Post-translational modifications for FGF14-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FGF14-IT1 Gene

Domains & Families for FGF14-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FGF14-IT1 Gene

Function for FGF14-IT1 Gene

Phenotypes for FGF14-IT1 Gene

GenomeRNAi human phenotypes for FGF14-IT1:
genes like me logo Genes that share phenotypes with FGF14-IT1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FGF14-IT1 Gene

Localization for FGF14-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FGF14-IT1 Gene

Pathways & Interactions for FGF14-IT1 Gene

SuperPathways for FGF14-IT1 Gene

No Data Available

Interacting Proteins for FGF14-IT1 Gene

Gene Ontology (GO) - Biological Process for FGF14-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FGF14-IT1 Gene

Transcripts for FGF14-IT1 Gene

mRNA/cDNA for FGF14-IT1 Gene

(4) Additional mRNA sequences :
(21) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FGF14-IT1 Gene

FGF14 intronic transcript 1 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FGF14-IT1 Gene

No ASD Table

Relevant External Links for FGF14-IT1 Gene

GeneLoc Exon Structure for
FGF14-IT1
ECgene alternative splicing isoforms for
FGF14-IT1

Expression for FGF14-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FGF14-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for FGF14-IT1 Gene

This gene is overexpressed in Testis (x33.1) and Brain - Cerebellum (x4.1).

SOURCE GeneReport for Unigene cluster for FGF14-IT1 Gene:

Hs.662212
genes like me logo Genes that share expression patterns with FGF14-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for FGF14-IT1 Gene

Orthologs for FGF14-IT1 Gene

Evolution for FGF14-IT1 Gene

ENSEMBL:
Gene Tree for FGF14-IT1 (if available)
TreeFam:
Gene Tree for FGF14-IT1 (if available)

No data available for Orthologs for FGF14-IT1 Gene

Paralogs for FGF14-IT1 Gene

No data available for Paralogs for FGF14-IT1 Gene

Variants for FGF14-IT1 Gene

Sequence variations from dbSNP and Humsavar for FGF14-IT1 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs10162083 -- 102,374,831(+) ATTCA(A/G)GAGAT intron-variant
rs10508086 -- 102,314,420(+) TGAAC(C/T)GAAGG intron-variant
rs10551753 -- 102,300,933(+) CACAC(-/ACACAT)ACACA intron-variant, nc-transcript-variant
rs1056180 -- 102,292,478(-) TGTAC(A/G)TATCT intron-variant, nc-transcript-variant
rs10593906 -- 102,292,293(+) AAAAA(-/A)CTGAC intron-variant, downstream-variant-500B

Relevant External Links for FGF14-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FGF14-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for FGF14-IT1 Gene

Disorders for FGF14-IT1 Gene

Relevant External Links for FGF14-IT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FGF14-IT1

No disorders were found for FGF14-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FGF14-IT1 Gene

Publications for FGF14-IT1 Gene

  1. A genome-wide search for common SNP x SNP interactions on the risk of venous thrombosis. (PMID: 23509962) Greliche N. … TrAcgouAt D.A. (BMC Med. Genet. 2013) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for FGF14-IT1 Gene

Sources for FGF14-IT1 Gene

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