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Aliases for FGF14-IT1 Gene

Subcategory (RNA class) for FGF14-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FGF14-IT1 Gene

  • FGF14 Intronic Transcript 1 2 3 5
  • FGF14 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for FGF14-IT1 Gene

Previous GeneCards Identifiers for FGF14-IT1 Gene

  • GC13M102946

Summaries for FGF14-IT1 Gene

GeneCards Summary for FGF14-IT1 Gene

FGF14-IT1 (FGF14 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for FGF14-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FGF14-IT1 Gene

Genomics for FGF14-IT1 Gene

GeneHancer (GH) Regulatory Elements for FGF14-IT1 Gene

Promoters and enhancers for FGF14-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13I102393 Promoter/Enhancer 1.4 Ensembl ENCODE 550.8 -0.1 -119 1.9 ATF1 SIN3A YY1 ETS1 E2F8 ZNF143 ZNF207 RUNX3 YY2 REST FGF14-AS2 FGF14-IT1 GC13P102395 FGF14-AS1 FGF14
GH13I102457 Enhancer 0.8 ENCODE 11.3 -63.0 -63017 0.1 ELF3 CTCF PKNOX1 USF1 ETV1 MAX ZNF644 IRF4 RAD21 YY1 FGF14 FGF14-IT1 FGF14-AS1 GC13M102485
GH13I102285 Enhancer 0.7 ENCODE 8.4 +108.0 108034 1.7 FOXA2 JUN MAX RAD21 YY1 FOSL2 FOS RXRA CEBPB REST FGF14-IT1 GC13M102249 ENSG00000279702 FGF14
GH13I102355 Enhancer 0.2 ENCODE 10.8 +39.1 39093 0.2 FGF14-IT1 FGF14 FGF14-AS1 GC13P102315
GH13I102317 Enhancer 0.7 ENCODE 0.2 +76.7 76690 1.2 FOXA2 TAF1 MAX RAD21 YY1 POLR2A HNF4G RCOR1 CHD2 RXRA FGF14-AS2 GC13P102315 FGF14-AS1 FGF14-IT1 FGF14
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around FGF14-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for FGF14-IT1 Gene

Genomic Locations for FGF14-IT1 Gene
chr13:102,292,320-102,394,519
(GRCh38/hg38)
Size:
102,200 bases
Orientation:
Minus strand
chr13:102,944,670-103,046,869
(GRCh37/hg19)

Genomic View for FGF14-IT1 Gene

Genes around FGF14-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FGF14-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FGF14-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FGF14-IT1 Gene

Proteins for FGF14-IT1 Gene

Post-translational modifications for FGF14-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FGF14-IT1 Gene

Domains & Families for FGF14-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FGF14-IT1 Gene

Function for FGF14-IT1 Gene

Phenotypes for FGF14-IT1 Gene

GenomeRNAi human phenotypes for FGF14-IT1:
genes like me logo Genes that share phenotypes with FGF14-IT1: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FGF14-IT1 Gene

Localization for FGF14-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FGF14-IT1 Gene

Pathways & Interactions for FGF14-IT1 Gene

SuperPathways for FGF14-IT1 Gene

No Data Available

Interacting Proteins for FGF14-IT1 Gene

Gene Ontology (GO) - Biological Process for FGF14-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FGF14-IT1 Gene

Drugs & Compounds for FGF14-IT1 Gene

No Compound Related Data Available

Transcripts for FGF14-IT1 Gene

mRNA/cDNA for FGF14-IT1 Gene

(4) Additional mRNA sequences :
(21) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FGF14-IT1 Gene

FGF14 intronic transcript 1 (non-protein coding):
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for FGF14-IT1 Gene

No ASD Table

Relevant External Links for FGF14-IT1 Gene

GeneLoc Exon Structure for
FGF14-IT1
ECgene alternative splicing isoforms for
FGF14-IT1

Expression for FGF14-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FGF14-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for FGF14-IT1 Gene

This gene is overexpressed in Testis (x33.1) and Brain - Cerebellum (x4.1).

SOURCE GeneReport for Unigene cluster for FGF14-IT1 Gene:

Hs.662212
genes like me logo Genes that share expression patterns with FGF14-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FGF14-IT1 Gene

Orthologs for FGF14-IT1 Gene

Evolution for FGF14-IT1 Gene

ENSEMBL:
Gene Tree for FGF14-IT1 (if available)
TreeFam:
Gene Tree for FGF14-IT1 (if available)

No data available for Orthologs for FGF14-IT1 Gene

Paralogs for FGF14-IT1 Gene

No data available for Paralogs for FGF14-IT1 Gene

Variants for FGF14-IT1 Gene

Sequence variations from dbSNP and Humsavar for FGF14-IT1 Gene

SNP ID Clin Chr 13 pos Variation AA Info Type
rs1000001695 -- 102,320,503(-) G/A intron_variant
rs1000017712 -- 102,350,432(-) T/C intron_variant
rs1000031932 -- 102,391,264(-) T/C intron_variant
rs1000044586 -- 102,362,581(-) A/G intron_variant
rs1000142641 -- 102,314,228(-) T/C intron_variant

Additional Variant Information for FGF14-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FGF14-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for FGF14-IT1 Gene

Disorders for FGF14-IT1 Gene

Additional Disease Information for FGF14-IT1

No disorders were found for FGF14-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FGF14-IT1 Gene

Publications for FGF14-IT1 Gene

  1. A genome-wide search for common SNP x SNP interactions on the risk of venous thrombosis. (PMID: 23509962) Greliche N … Trégouët DA (BMC medical genetics 2013) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for FGF14-IT1 Gene

Sources for FGF14-IT1 Gene

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