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Aliases for FGF12-AS3 Gene

Subcategory (RNA class) for FGF12-AS3 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FGF12-AS3 Gene

  • FGF12 Antisense RNA 3 2 3 5
  • FGF12 Antisense RNA 3 (Non-Protein Coding) 2

External Ids for FGF12-AS3 Gene

Previous GeneCards Identifiers for FGF12-AS3 Gene

  • GC00U933279
  • GC03P192237

Summaries for FGF12-AS3 Gene

GeneCards Summary for FGF12-AS3 Gene

FGF12-AS3 (FGF12 Antisense RNA 3) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FGF12-AS3 Gene

Genomics for FGF12-AS3 Gene

Regulatory Elements for FGF12-AS3 Gene

Enhancers for FGF12-AS3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F192494 0.2 ENCODE 11.3 -20.5 -20478 0.2 FGF12-AS3 GC03M192418
GH03F192444 0.7 ENCODE 0.2 -70.1 -70148 0.2 CTCF ZNF654 TBL1XR1 TEAD1 MAX TRIM22 REST RAD21 ZNF143 SMC3 FGF12-AS1 GC03M192418 FGF12-AS3
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FGF12-AS3 on UCSC Golden Path with GeneCards custom track

Promoters for FGF12-AS3 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001856386 456 1001 CTCF KLF1 ZNF146 PKNOX1 ZNF76 SIN3A E2F1 ZFHX2 GLIS2 POLR2A

Genomic Location for FGF12-AS3 Gene

Chromosome:
3
Start:
192,514,844 bp from pter
End:
192,521,899 bp from pter
Size:
7,056 bases
Orientation:
Plus strand

Genomic View for FGF12-AS3 Gene

Genes around FGF12-AS3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FGF12-AS3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FGF12-AS3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FGF12-AS3 Gene

Proteins for FGF12-AS3 Gene

Post-translational modifications for FGF12-AS3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FGF12-AS3 Gene

Domains & Families for FGF12-AS3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FGF12-AS3 Gene

Function for FGF12-AS3 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FGF12-AS3 Gene

Localization for FGF12-AS3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FGF12-AS3 Gene

Pathways & Interactions for FGF12-AS3 Gene

SuperPathways for FGF12-AS3 Gene

No Data Available

Interacting Proteins for FGF12-AS3 Gene

Gene Ontology (GO) - Biological Process for FGF12-AS3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FGF12-AS3 Gene

Transcripts for FGF12-AS3 Gene

mRNA/cDNA for FGF12-AS3 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for FGF12-AS3 Gene

No ASD Table

Relevant External Links for FGF12-AS3 Gene

GeneLoc Exon Structure for
FGF12-AS3
ECgene alternative splicing isoforms for
FGF12-AS3

Expression for FGF12-AS3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FGF12-AS3 Gene

genes like me logo Genes that share expression patterns with FGF12-AS3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for FGF12-AS3 Gene

Orthologs for FGF12-AS3 Gene

Evolution for FGF12-AS3 Gene

ENSEMBL:
Gene Tree for FGF12-AS3 (if available)
TreeFam:
Gene Tree for FGF12-AS3 (if available)

No data available for Orthologs for FGF12-AS3 Gene

Paralogs for FGF12-AS3 Gene

No data available for Paralogs for FGF12-AS3 Gene

Variants for FGF12-AS3 Gene

Sequence variations from dbSNP and Humsavar for FGF12-AS3 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs10681949 -- 192,515,834(+) TTTTT(-/TT/TTT/TTTTTTT)CTTTT intron-variant, upstream-variant-2KB
rs111488656 -- 192,518,132(+) ATTAT(C/T)GTTTT intron-variant, nc-transcript-variant
rs112533529 -- 192,519,475(+) CAGTT(A/C)GTGGT intron-variant, downstream-variant-500B
rs113112762 -- 192,516,757(+) AGTGG(C/T)ATCAC intron-variant, nc-transcript-variant, downstream-variant-500B, upstream-variant-2KB
rs11322272 -- 192,515,845(+) TTTTT(-/T)CTTTT intron-variant, upstream-variant-2KB

Relevant External Links for FGF12-AS3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FGF12-AS3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for FGF12-AS3 Gene

Disorders for FGF12-AS3 Gene

Relevant External Links for FGF12-AS3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FGF12-AS3

No disorders were found for FGF12-AS3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FGF12-AS3 Gene

Publications for FGF12-AS3 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for FGF12-AS3 Gene

Sources for FGF12-AS3 Gene

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