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Aliases for FGF12-AS1 Gene

Subcategory (RNA class) for FGF12-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FGF12-AS1 Gene

  • FGF12 Antisense RNA 1 2 3 5
  • FGF12 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for FGF12-AS1 Gene

Previous GeneCards Identifiers for FGF12-AS1 Gene

  • GC00U933144
  • GC03P191955

Summaries for FGF12-AS1 Gene

GeneCards Summary for FGF12-AS1 Gene

FGF12-AS1 (FGF12 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FGF12-AS1 Gene

Genomics for FGF12-AS1 Gene

Regulatory Elements for FGF12-AS1 Gene

Enhancers for FGF12-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F192846 1.3 Ensembl ENCODE 16.2 +612.0 612026 6.5 HDGF PKNOX1 WRNIP1 SIN3A FEZF1 ZNF2 ZNF48 YY1 ZNF207 FOS MB21D2 FGF12-AS1 ENSG00000232353 FGF12
GH03F192825 1.2 Ensembl ENCODE 16.2 +587.8 587764 1.2 PKNOX1 INSM2 BMI1 FEZF1 ZNF2 EGR1 ZNF366 SCRT2 CREM EGR2 FGF12-AS1 ENSG00000232353 MB21D2 FGF12
GH03F192444 0.7 ENCODE 10.4 +206.7 206660 0.2 CTCF ZNF654 TBL1XR1 TEAD1 MAX TRIM22 REST RAD21 ZNF143 SMC3 FGF12-AS1 GC03M192418 FGF12-AS3
GH03F192167 0.3 FANTOM5 10.2 -70.9 -70868 0.0 FGF12-AS1 FGF12 GC03M192209 RN7SKP222
GH03F192273 0.6 ENCODE 0.3 +35.8 35750 0.2 ZNF217 GATA3 CTBP1 DPF2 KLF4 FGF12-AS1 GC03M192418
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FGF12-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for FGF12-AS1 Gene

Chromosome:
3
Start:
192,238,037 bp from pter
End:
192,283,097 bp from pter
Size:
45,061 bases
Orientation:
Plus strand

Genomic View for FGF12-AS1 Gene

Genes around FGF12-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FGF12-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FGF12-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FGF12-AS1 Gene

Proteins for FGF12-AS1 Gene

Post-translational modifications for FGF12-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FGF12-AS1 Gene

Domains & Families for FGF12-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FGF12-AS1 Gene

Function for FGF12-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FGF12-AS1 Gene

Localization for FGF12-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FGF12-AS1 Gene

Pathways & Interactions for FGF12-AS1 Gene

SuperPathways for FGF12-AS1 Gene

No Data Available

Interacting Proteins for FGF12-AS1 Gene

Gene Ontology (GO) - Biological Process for FGF12-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FGF12-AS1 Gene

Transcripts for FGF12-AS1 Gene

mRNA/cDNA for FGF12-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for FGF12-AS1 Gene

No ASD Table

Relevant External Links for FGF12-AS1 Gene

GeneLoc Exon Structure for
FGF12-AS1
ECgene alternative splicing isoforms for
FGF12-AS1

Expression for FGF12-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FGF12-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for FGF12-AS1 Gene

This gene is overexpressed in Testis (x38.0), Heart - Left Ventricle (x6.2), and Heart - Atrial Appendage (x4.9).
genes like me logo Genes that share expression patterns with FGF12-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for FGF12-AS1 Gene

Orthologs for FGF12-AS1 Gene

Evolution for FGF12-AS1 Gene

ENSEMBL:
Gene Tree for FGF12-AS1 (if available)
TreeFam:
Gene Tree for FGF12-AS1 (if available)

No data available for Orthologs for FGF12-AS1 Gene

Paralogs for FGF12-AS1 Gene

No data available for Paralogs for FGF12-AS1 Gene

Variants for FGF12-AS1 Gene

Sequence variations from dbSNP and Humsavar for FGF12-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs10470541 -- 192,242,663(+) AATGT(A/T)ATATA intron-variant
rs111362999 -- 192,282,139(+) TTTCA(-/ATC)TTCTA intron-variant
rs111398857 -- 192,247,754(+) CTGTG(C/T)GGCTT intron-variant
rs111456978 -- 192,273,956(+) CATCA(C/G)CATCG intron-variant
rs111537725 -- 192,257,554(+) CAGAG(C/T)CATTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FGF12-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv963555 CNV duplication 23825009
nsv819527 CNV gain 19587683
nsv819296 CNV loss 19587683
nsv477560 CNV novel sequence insertion 20440878
nsv435755 CNV deletion 17901297
nsv4170 CNV deletion 18451855
nsv1002806 CNV loss 25217958
esv3893848 CNV loss 25118596
esv3599142 CNV gain 21293372
esv3599140 CNV gain 21293372
esv3569197 CNV loss 25503493
esv3421948 CNV insertion 20981092
esv2726410 CNV deletion 23290073
esv24127 CNV gain 19812545
dgv966e214 CNV loss 21293372
dgv846n67 CNV gain 20364138

Relevant External Links for FGF12-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FGF12-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FGF12-AS1 Gene

Disorders for FGF12-AS1 Gene

Relevant External Links for FGF12-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FGF12-AS1

No disorders were found for FGF12-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FGF12-AS1 Gene

Publications for FGF12-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for FGF12-AS1 Gene

Sources for FGF12-AS1 Gene

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