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Aliases for FGF10-AS1 Gene

Subcategory (RNA class) for FGF10-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FGF10-AS1 Gene

  • FGF10 Antisense RNA 1 2 3 5

External Ids for FGF10-AS1 Gene

Summaries for FGF10-AS1 Gene

GeneCards Summary for FGF10-AS1 Gene

FGF10-AS1 (FGF10 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FGF10-AS1 Gene

Genomics for FGF10-AS1 Gene

Regulatory Elements for FGF10-AS1 Gene

Enhancers for FGF10-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05F044603 0.2 ENCODE 10.7 +214.9 214922 0.2 FGF10 FGF10-AS1 GC05P044546 BRCAT107
GH05F043482 0.2 ENCODE 10.7 -903.7 -903725 5.6 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF131 EEF1A1P19 RPL29P12 ENSG00000248240 NNT CCL28 ENSG00000249492 PAIP1 LOC153684 FGF10-AS1
GH05F043554 0.4 ENCODE 10.7 -832.4 -832358 3.2 ARNT CREB3L1 ARID4B SIN3A DMAP1 ZNF2 ZNF207 ZNF143 KLF13 ZNF263 NNT ENSG00000248240 EEF1A1P19 NNT-AS1 RPL29P12 ENSG00000249492 LOC153684 FGF10-AS1 ENSG00000272382 ANXA2R
GH05F044387 1 VISTA ENCODE 0.8 +0.4 409 2.5 ZFHX2 CBX2 REST PRDM10 PRDM1 EGR2 FGF10 FGF10-AS1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around FGF10-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for FGF10-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001868745 768 1800 ZFHX2 REST PRDM10 PRDM1 EGR2
ENSR00001868744 -931 1200 CBX2 PRDM1

Genomic Location for FGF10-AS1 Gene

Chromosome:
5
Start:
44,388,732 bp from pter
End:
44,413,989 bp from pter
Size:
25,258 bases
Orientation:
Plus strand

Genomic View for FGF10-AS1 Gene

Genes around FGF10-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FGF10-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FGF10-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FGF10-AS1 Gene

Proteins for FGF10-AS1 Gene

Post-translational modifications for FGF10-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FGF10-AS1 Gene

Domains & Families for FGF10-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FGF10-AS1 Gene

Function for FGF10-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FGF10-AS1 Gene

Localization for FGF10-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FGF10-AS1 Gene

Pathways & Interactions for FGF10-AS1 Gene

SuperPathways for FGF10-AS1 Gene

No Data Available

Interacting Proteins for FGF10-AS1 Gene

Gene Ontology (GO) - Biological Process for FGF10-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FGF10-AS1 Gene

Transcripts for FGF10-AS1 Gene

mRNA/cDNA for FGF10-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for FGF10-AS1 Gene

No ASD Table

Relevant External Links for FGF10-AS1 Gene

GeneLoc Exon Structure for
FGF10-AS1
ECgene alternative splicing isoforms for
FGF10-AS1

Expression for FGF10-AS1 Gene

mRNA expression in normal human tissues for FGF10-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for FGF10-AS1 Gene

This gene is overexpressed in Cervix - Endocervix (x5.0), Cervix - Ectocervix (x4.7), and Adipose - Visceral (Omentum) (x4.3).
genes like me logo Genes that share expression patterns with FGF10-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for FGF10-AS1 Gene

Orthologs for FGF10-AS1 Gene

Evolution for FGF10-AS1 Gene

ENSEMBL:
Gene Tree for FGF10-AS1 (if available)
TreeFam:
Gene Tree for FGF10-AS1 (if available)

No data available for Orthologs for FGF10-AS1 Gene

Paralogs for FGF10-AS1 Gene

No data available for Paralogs for FGF10-AS1 Gene

Variants for FGF10-AS1 Gene

Sequence variations from dbSNP and Humsavar for FGF10-AS1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs104893885 Pathogenic 44,388,366(-) GAACT(G/T)CCCGT upstream-variant-2KB, reference, missense
rs104893888 Pathogenic 44,388,443(-) TGGAG(A/C)AAGCT upstream-variant-2KB, reference, missense
rs145373611 Likely benign 44,388,586(+) AGGGA(C/T)GGAAG upstream-variant-2KB, reference, missense
rs10052488 -- 44,404,443(+) tttca(A/C)acccc intron-variant
rs10055789 -- 44,411,081(+) GCTTA(A/C)TACCC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FGF10-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv830277 CNV gain 17160897

Relevant External Links for FGF10-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FGF10-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FGF10-AS1 Gene

Disorders for FGF10-AS1 Gene

Relevant External Links for FGF10-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FGF10-AS1

No disorders were found for FGF10-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FGF10-AS1 Gene

Publications for FGF10-AS1 Gene

  1. Integrated analysis of dysregulated lncRNA expression in fetal cardiac tissues with ventricular septal defect. (PMID: 24147006) Song G. … Qian L. (PLoS ONE 2013) 2 3 64

Products for FGF10-AS1 Gene

Sources for FGF10-AS1 Gene

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