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Aliases for FGF10-AS1 Gene

Subcategory (RNA class) for FGF10-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FGF10-AS1 Gene

  • FGF10 Antisense RNA 1 2 3 5

External Ids for FGF10-AS1 Gene

Summaries for FGF10-AS1 Gene

GeneCards Summary for FGF10-AS1 Gene

FGF10-AS1 (FGF10 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FGF10-AS1 Gene

Genomics for FGF10-AS1 Gene

Regulatory Elements for FGF10-AS1 Gene

Enhancers for FGF10-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05G043482 1.2 ENCODE 10.7 -903.7 -903725 5.6 CREB3L1 AGO1 FEZF1 DMAP1 YY1 ZNF143 SP3 ZNF610 ZNF585B GLIS1 EEF1A1P19 ZNF131 RPL29P12 ENSG00000248240 NNT CCL28 ENSG00000249492 PAIP1 LOC153684 FGF10-AS1
GH05G043554 1.1 ENCODE 10.7 -832.4 -832358 3.2 ARNT CREB3L1 ARID4B SIN3A DMAP1 ZNF2 ZNF207 ZNF143 KLF13 ZNF263 ENSG00000248240 NNT ZNF131 RPL29P12 C5orf34 EEF1A1P19 NNT-AS1 ENSG00000249492 LOC153684 FGF10-AS1
GH05G044603 0.4 ENCODE 10.7 +214.9 214922 0.2 CTCF FGF10 FGF10-AS1 GC05P044546 LINC02224
GH05G044387 1.4 VISTA Ensembl ENCODE 0.7 +0.4 409 2.5 SUZ12 CHD1 CBX2 RBBP5 REST ZFHX2 PRDM10 PRDM1 EZH2 EGR2 FGF10-AS1 FGF10
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FGF10-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for FGF10-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000180264 669 800 ZFHX2 SUZ12 CHD1 RBBP5 PRDM10 EGR2 EZH2

Genomic Location for FGF10-AS1 Gene

Chromosome:
5
Start:
44,388,732 bp from pter
End:
44,413,989 bp from pter
Size:
25,258 bases
Orientation:
Plus strand

Genomic View for FGF10-AS1 Gene

Genes around FGF10-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FGF10-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FGF10-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FGF10-AS1 Gene

Proteins for FGF10-AS1 Gene

Post-translational modifications for FGF10-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FGF10-AS1 Gene

Domains & Families for FGF10-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FGF10-AS1 Gene

Function for FGF10-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FGF10-AS1 Gene

Localization for FGF10-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FGF10-AS1 Gene

Pathways & Interactions for FGF10-AS1 Gene

SuperPathways for FGF10-AS1 Gene

No Data Available

Interacting Proteins for FGF10-AS1 Gene

Gene Ontology (GO) - Biological Process for FGF10-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FGF10-AS1 Gene

Drugs & Compounds for FGF10-AS1 Gene

No Compound Related Data Available

Transcripts for FGF10-AS1 Gene

mRNA/cDNA for FGF10-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for FGF10-AS1 Gene

No ASD Table

Relevant External Links for FGF10-AS1 Gene

GeneLoc Exon Structure for
FGF10-AS1
ECgene alternative splicing isoforms for
FGF10-AS1

Expression for FGF10-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FGF10-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for FGF10-AS1 Gene

This gene is overexpressed in Cervix - Endocervix (x5.0), Cervix - Ectocervix (x4.7), and Adipose - Visceral (Omentum) (x4.3).
genes like me logo Genes that share expression patterns with FGF10-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FGF10-AS1 Gene

Orthologs for FGF10-AS1 Gene

Evolution for FGF10-AS1 Gene

ENSEMBL:
Gene Tree for FGF10-AS1 (if available)
TreeFam:
Gene Tree for FGF10-AS1 (if available)

No data available for Orthologs for FGF10-AS1 Gene

Paralogs for FGF10-AS1 Gene

No data available for Paralogs for FGF10-AS1 Gene

Variants for FGF10-AS1 Gene

Sequence variations from dbSNP and Humsavar for FGF10-AS1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs104893885 Pathogenic 44,388,366(-) GAACT(G/T)CCCGT upstream-variant-2KB, reference, missense
rs104893888 Pathogenic 44,388,443(-) TGGAG(A/C)AAGCT upstream-variant-2KB, reference, missense
rs145373611 Likely benign 44,388,586(+) AGGGA(C/T)GGAAG upstream-variant-2KB, reference, missense
rs545941601 Likely benign 44,388,422(+) AAGTA(C/T)TTGGT upstream-variant-2KB, reference, synonymous-codon
rs886060654 Uncertain significance 44,388,497(-) TCCAG(A/C)GCGGG upstream-variant-2KB, reference, missense

Structural Variations from Database of Genomic Variants (DGV) for FGF10-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv830277 CNV gain 17160897

Relevant External Links for FGF10-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FGF10-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FGF10-AS1 Gene

Disorders for FGF10-AS1 Gene

Relevant External Links for FGF10-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FGF10-AS1

No disorders were found for FGF10-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FGF10-AS1 Gene

Publications for FGF10-AS1 Gene

  1. Integrated analysis of dysregulated lncRNA expression in fetal cardiac tissues with ventricular septal defect. (PMID: 24147006) Song G. … Qian L. (PLoS ONE 2013) 2 3 64

Products for FGF10-AS1 Gene

Sources for FGF10-AS1 Gene

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