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Aliases for FGF1 Gene

Aliases for FGF1 Gene

  • Fibroblast Growth Factor 1 (Acidic) 2 3
  • Heparin-Binding Growth Factor 1 2 3 4
  • FGFA 3 4 6
  • Endothelial Cell Growth Factor 2 4
  • HBGF-1 3 4
  • FGF-1 3 4
  • AFGF 3 4
  • ECGF 3 4
  • Endothelial Cell Growth Factor, Alpha 3
  • Endothelial Cell Growth Factor, Beta 3
  • Beta-Endothelial Cell Growth Factor 3
  • Acidic Fibroblast Growth Factor 4
  • Fibroblast Growth Factor 1 3
  • ECGF-Beta 3
  • FGF-Alpha 3
  • GLIO703 3
  • Alpha 2
  • ECGFA 3
  • ECGFB 3
  • HBGF1 3
  • Beta 2

External Ids for FGF1 Gene

Previous HGNC Symbols for FGF1 Gene

  • FGFA

Previous GeneCards Identifiers for FGF1 Gene

  • GC05M141873
  • GC05M142001
  • GC05M141953
  • GC05M137120

Summaries for FGF1 Gene

Entrez Gene Summary for FGF1 Gene

  • The protein encoded by this gene is a member of the fibroblast growth factor (FGF) family. FGF family members possess broad mitogenic and cell survival activities, and are involved in a variety of biological processes, including embryonic development, cell growth, morphogenesis, tissue repair, tumor growth and invasion. This protein functions as a modifier of endothelial cell migration and proliferation, as well as an angiogenic factor. It acts as a mitogen for a variety of mesoderm- and neuroectoderm-derived cells in vitro, thus is thought to be involved in organogenesis. Multiple alternatively spliced variants encoding different isoforms have been described. [provided by RefSeq, Jan 2009]

GeneCards Summary for FGF1 Gene

FGF1 (Fibroblast Growth Factor 1 (Acidic)) is a Protein Coding gene. Diseases associated with FGF1 include breast fibroadenoma and ischemia. Among its related pathways are PI3K-Akt signaling pathway and PI-3K cascade. GO annotations related to this gene include growth factor activity and fibroblast growth factor receptor binding. An important paralog of this gene is FGF2.

UniProtKB/Swiss-Prot for FGF1 Gene

  • Plays an important role in the regulation of cell survival, cell division, angiogenesis, cell differentiation and cell migration. Functions as potent mitogen in vitro.

Gene Wiki entry for FGF1 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FGF1 Gene

Genomics for FGF1 Gene

Regulatory Elements for FGF1 Gene

Genomic Location for FGF1 Gene

Start:
142,592,178 bp from pter
End:
142,698,070 bp from pter
Size:
105,893 bases
Orientation:
Minus strand

Genomic View for FGF1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FGF1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FGF1 Gene

Proteins for FGF1 Gene

  • Protein details for FGF1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P05230-FGF1_HUMAN
    Recommended name:
    Fibroblast growth factor 1
    Protein Accession:
    P05230
    Secondary Accessions:
    • B2R5T0
    • D3DQF2
    • P07502
    • Q16588

    Protein attributes for FGF1 Gene

    Size:
    155 amino acids
    Molecular mass:
    17460 Da
    Quaternary structure:
    • Monomer. Homodimer. Interacts with FGFR1, FGFR2, FGFR3 and FGFR4. Affinity between fibroblast growth factors (FGFs) and their receptors is increased by heparan sulfate glycosaminoglycans that function as coreceptors. Found in a complex with FGFBP1, FGF1 and FGF2. Interacts with FGFBP1. Part of a Cu(2+)-dependent multiprotein aggregate containing FGF1, S100A13 and SYT1. Interacts with SYT1 (By similarity). Interacts with S100A13. Interacts with LRRC59. Interacts with CSNKA, CSNKB and FIBP. While binding with LRRC59, CSNKA and FIBP seem mutually exclusive, CSNKB and FIBP may cooperatively interact with FGF1.

    Three dimensional structures from OCA and Proteopedia for FGF1 Gene

    Alternative splice isoforms for FGF1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for FGF1 Gene

Proteomics data for FGF1 Gene at MOPED

Post-translational modifications for FGF1 Gene

Antibody Products

  • Cell Signaling Technology (CST) Antibodies for FGF1 (FGF1)

Protein Products

No data available for DME Specific Peptides for FGF1 Gene

Domains for FGF1 Gene

Gene Families for FGF1 Gene

HGNC:

Suggested Antigen Peptide Sequences for FGF1 Gene

Graphical View of Domain Structure for InterPro Entry

P05230

UniProtKB/Swiss-Prot:

FGF1_HUMAN :
  • P05230
Family:
  • Belongs to the heparin-binding growth factors family.
genes like me logo Genes that share domains with FGF1: view

Function for FGF1 Gene

Molecular function for FGF1 Gene

GENATLAS Biochemistry:
fibroblast growth factor 1,acidic (endothelial cell),associated with S100A13 and p40 extracellular domain of synaptotagmin 1 (SYT1) for the release of signal peptide-less FGF1 in a temperature stress-induced pathway,mainly expressed in brain,and delinating a retrocaudal boundary in the granule cell layer of the (murine) cerebellar cortex,also expressed in the retina (accessible to pharmacologic regulation)
UniProtKB/Swiss-Prot Function:
Plays an important role in the regulation of cell survival, cell division, angiogenesis, cell differentiation and cell migration. Functions as potent mitogen in vitro.

Gene Ontology (GO) - Molecular Function for FGF1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005104 fibroblast growth factor receptor binding IPI 10830168
GO:0005515 protein binding IPI 10618369
GO:0008083 growth factor activity IDA 20145243
GO:0008201 heparin binding IDA 20145243
GO:0030544 Hsp70 protein binding IEA --
genes like me logo Genes that share ontologies with FGF1: view
genes like me logo Genes that share phenotypes with FGF1: view

Animal Models for FGF1 Gene

MGI Knock Outs for FGF1:

Animal Model Products

miRNA for FGF1 Gene

miRTarBase miRNAs that target FGF1

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for FGF1

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Transcription Factor Targeting and HOMER Transcription for FGF1 Gene

Localization for FGF1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for FGF1 Gene

Secreted. Cytoplasm. Cytoplasm, cell cortex. Cytoplasm, cytosol. Nucleus. Note=Lacks a cleavable signal sequence. Within the cytoplasm, it is transported to the cell membrane and then secreted by a non-classical pathway that requires Cu(2+) ions and S100A13. Secreted in a complex with SYT1 (By similarity). Binding of exogenous FGF1 to FGFR facilitates endocytosis followed by translocation of FGF1 across endosomal membrane into the cytosol. Nuclear import from the cytosol requires the classical nuclear import machinery, involving proteins KPNA1 and KPNB1, as well as LRRC59. {ECO:0000250}.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for FGF1 Gene COMPARTMENTS Subcellular localization image for FGF1 gene
Compartment Confidence
cytosol 5
extracellular 5
nucleus 5
cytoskeleton 2
endoplasmic reticulum 2
plasma membrane 2
endosome 1
golgi apparatus 1
mitochondrion 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for FGF1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region TAS --
GO:0005578 proteinaceous extracellular matrix IEA --
GO:0005615 extracellular space IDA 18400376
GO:0005634 nucleus --
GO:0005654 nucleoplasm IDA --
genes like me logo Genes that share ontologies with FGF1: view

Pathways for FGF1 Gene

SuperPathways for FGF1 Gene

Superpath Contained pathways
1 Apoptotic Pathways in Synovial Fibroblasts
2 PI-3K cascade
3 Signaling by FGFR
4 FGFR ligand binding and activation
5 GPCR Pathway
genes like me logo Genes that share pathways with FGF1: view

PCR Array Products

Gene Ontology (GO) - Biological Process for FGF1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001525 angiogenesis IEA --
GO:0001759 organ induction IEA --
GO:0001934 positive regulation of protein phosphorylation --
GO:0007165 signal transduction NAS 3778488
GO:0007173 epidermal growth factor receptor signaling pathway TAS --
genes like me logo Genes that share ontologies with FGF1: view

Compounds for FGF1 Gene

(1) HMDB Compounds for FGF1 Gene

Compound Synonyms Cas Number PubMed IDs
Heparin
  • Arteven
9005-49-6

(9) Drugbank Compounds for FGF1 Gene

Compound Synonyms Cas Number Type Actions PubMed IDs
5-AMINO-NAPHTALENE-2-MONOSULFONATE
target
Amlexanox
  • Amlexanox [USAN:INN:JAN]
68302-57-8 target inhibitor
Formic Acid
  • Aminic acid
64-18-6 target
N,O6-Disulfo-Glucosamine
target
Naphthalene Trisulfonate
target

(92) Novoseek inferred chemical compound relationships for FGF1 Gene

Compound -log(P) Hits PubMed IDs
heparin 78.8 291
amlexanox 75.2 13
inositol hexasulfate 73.2 7
sucrose octasulfate 73 14
safrole oxide 72.8 3
genes like me logo Genes that share compounds with FGF1: view

Transcripts for FGF1 Gene

Unigene Clusters for FGF1 Gene

Fibroblast growth factor 1 (acidic):
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for FGF1

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for FGF1 Gene

ExUns: 1 ^ 2a · 2b · 2c · 2d · 2e ^ 3a · 3b · 3c · 3d ^ 4 ^ 5 ^ 6 ^ 7a · 7b ^ 8a · 8b ^ 9a · 9b ^ 10a · 10b · 10c · 10d · 10e · 10f · 10g ·
SP1: - - - - - - - - - - - -
SP2: - - - - - - - - -
SP3: - - - - - - - -
SP4: - - - - - - - - -
SP5: - - - - - - - - -
SP6: - - - - - - - -
SP7: - - - - - - - - - -
SP8: - - - - - -
SP9: - - - - - -
SP10: - - - - -
SP11: - -
SP12:
SP13:
SP14: - - - - - - - - - - -
SP15: - - - - -
SP16: - -

ExUns: 10h · 10i · 10j
SP1:
SP2:
SP3:
SP4:
SP5:
SP6:
SP7:
SP8:
SP9:
SP10:
SP11:
SP12:
SP13:
SP14:
SP15:
SP16:

Relevant External Links for FGF1 Gene

GeneLoc Exon Structure for
FGF1
ECgene alternative splicing isoforms for
FGF1

Expression for FGF1 Gene

mRNA expression in normal human tissues for FGF1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for FGF1 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (8.1), Brain - Substantia nigra (6.3), Brain - Hippocampus (5.0), Brain - Amygdala (4.9), Brain - Putamen (basal ganglia) (4.6), and Brain - Hypothalamus (4.0).

Protein differential expression in normal tissues for FGF1 Gene

This gene is overexpressed in Spinal cord (24.3), Frontal cortex (11.4), Retina (10.3), and Brain (8.5).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for FGF1 Gene

SOURCE GeneReport for Unigene cluster for FGF1 Gene Hs.483635

mRNA Expression by UniProt/SwissProt for FGF1 Gene

P05230-FGF1_HUMAN
Tissue specificity: Predominantly expressed in kidney and brain. Detected at much lower levels in heart and skeletal muscle.
genes like me logo Genes that share expressions with FGF1: view

Expression partners for FGF1 Gene

In Situ Assay Products

Orthologs for FGF1 Gene

This gene was present in the common ancestor of animals.

Orthologs for FGF1 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia FGF1 35
  • 91.4 (n)
  • 92.26 (a)
FGF1 36
  • 92 (a)
OneToOne
dog
(Canis familiaris)
Mammalia FGF1 35
  • 94.84 (n)
  • 98.71 (a)
FGF1 36
  • 99 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Fgf1 35
  • 90.54 (n)
  • 95.48 (a)
Fgf1 16
Fgf1 36
  • 95 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia FGF1 35
  • 99.35 (n)
  • 100 (a)
FGF1 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Fgf1 35
  • 89.25 (n)
  • 95.48 (a)
oppossum
(Monodelphis domestica)
Mammalia FGF1 36
  • 89 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia FGF1 36
  • 90 (a)
OneToOne
chicken
(Gallus gallus)
Aves FGF1 35
  • 79.78 (n)
  • 90.32 (a)
FGF1 36
  • 90 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia FGF1 36
  • 79 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia fgf1 35
  • 69.25 (n)
  • 76.13 (a)
zebrafish
(Danio rerio)
Actinopterygii fgf1a 36
  • 54 (a)
ManyToMany
fgf1b 36
  • 51 (a)
ManyToMany
fruit fly
(Drosophila melanogaster)
Insecta bnl 36
  • 6 (a)
OneToMany
Species with no ortholog for FGF1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for FGF1 Gene

ENSEMBL:
Gene Tree for FGF1 (if available)
TreeFam:
Gene Tree for FGF1 (if available)

Paralogs for FGF1 Gene

Paralogs for FGF1 Gene

genes like me logo Genes that share paralogs with FGF1: view

Variants for FGF1 Gene

Sequence variations from dbSNP and Humsavar for FGF1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type MAF
rs3457 -- 142,680,926(-) TGATT(C/T)GGTGG intron-variant
rs33999 -- 142,593,784(-) TGTAT(C/G)TTTTA utr-variant-3-prime
rs34000 -- 142,593,936(-) AGACC(A/G)TTTGT utr-variant-3-prime
rs34001 -- 142,594,034(-) TAAGA(G/T)GCTTT utr-variant-3-prime
rs34002 -- 142,595,007(-) CCCTC(A/C)ATGCA utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for FGF1 Gene

Variant ID Type Subtype PubMed ID
nsv823281 CNV Loss 20364138
dgv1046e199 CNV Deletion 23128226
nsv830510 CNV Gain 17160897
nsv525272 CNV Loss 19592680
esv2665244 CNV Deletion 23128226
esv27821 CNV Loss 19812545
nsv517346 CNV Loss 19592680
esv2421733 CNV Deletion 20811451
nsv441966 CNV CNV 18776908
nsv514325 CNV Loss 21397061
nsv882993 CNV Loss 21882294

Relevant External Links for FGF1 Gene

HapMap Linkage Disequilibrium report
FGF1
Human Gene Mutation Database (HGMD)
FGF1

PCR Panel Products

  • Copy Number PCR Panels: for FGF1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FGF1 Gene

Disorders for FGF1 Gene

MalaCards: The human disease database

MalaCards: The human disease database.

Search for FGF1 Gene in MalaCards »

(2) Diseases for FGF1 Gene including...

(94) Novoseek inferred disease relationships for FGF1 Gene

Disease -log(P) Hits PubMed IDs
neovascularization 48.6 10
tumors 38.8 77
glioblastoma 37.9 8
bladder carcinoma 31.3 6
diphtheria 26.9 10

Relevant External Links for FGF1

Genetic Association Database (GAD)
FGF1
Human Genome Epidemiology (HuGE) Navigator
FGF1
genes like me logo Genes that share disorders with FGF1: view

No data available for OMIM , UniProtKB/Swiss-Prot and Genatlas for FGF1 Gene

Publications for FGF1 Gene

  1. An acidic fibroblast growth factor protein generated by alternate splicing acts like an antagonist. (PMID: 1372643) Li Y.L. … Turck E.J. (J. Exp. Med. 1992) 3 4 23
  2. Alternative splicing generates two forms of mRNA coding for human heparin-binding growth factor 1. (PMID: 1693186) Chiu I.M. … Lehtoma K. (Oncogene 1990) 3 4 23
  3. Cloning and sequence analysis of the human acidic fibroblast growth factor gene and its preservation in leukemia patients. (PMID: 1717925) Wang W.P. … Chiu I.M. (Oncogene 1991) 3 4 23
  4. The expression of acidic fibroblast growth factor (heparin-binding growth factor-1) and cytokine genes in human cardiac allografts and T cells. (PMID: 7504343) Zhao X.M. … Miller G.G. (Transplantation 1993) 3 4 23
  5. 1H-NMR assignment and solution structure of human acidic fibroblast growth factor activated by inositol hexasulfate. (PMID: 7521397) Pineda-Lucena A. … Gimenez-Gallego G. (J. Mol. Biol. 1994) 3 4 23

Products for FGF1 Gene

Sources for FGF1 Gene

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