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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

FGF1 Gene

protein-coding   GIFtS: 73
GCID: GC05M141953

fibroblast growth factor 1 (acidic)


(Previous symbol: FGFA)
 Explore 98 diseases affiliated with
FGF1 via our new
 Human Malady Compendium 
Biological research products
for FGF1
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

This gene clusters with an RNA gene
Subcategory (RNA class): lncRNA

Quality score for the ORGUL clustered with this gene is 3

Aliases
Fibroblast Growth Factor 1 (Acidic)1 2     Heparin-Binding Growth Factor 12 3
FGFA1 2 3 5     FGF-12 3
ECGF1 2 3     HBGF-12 3
AFGF1 2     Beta-Endothelial Cell Growth Factor2
ECGF-Beta1     Endothelial Cell Growth Factor, Alpha2
ECGFA1 2     Endothelial Cell Growth Factor, Beta2
ECGFB1 2     Fibroblast Growth Factor 12
FGF-Alpha1     AFGF1 2
GLIO7031 2     Acidic Fibroblast Growth Factor3
HBGF11 2     Endothelial Cell Growth Factor3

External Ids:    HGNC: 36651   Entrez Gene: 22462   Ensembl: ENSG000001135787   OMIM: 1312205   UniProtKB: P052303   
ORGUL members:         
NONCODE:n334117 n333721 n340669 n407227    

Export aliases for FGF1 gene to outside databases

Previous GC identifers: GC05M141873 GC05M142555 GC05M142001 GC05M137120


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for FGF1:
The protein encoded by this gene is a member of the fibroblast growth factor (FGF) family. FGF family members possess
broad mitogenic and cell survival activities, and are involved in a variety of biological processes, including
embryonic development, cell growth, morphogenesis, tissue repair, tumor growth and invasion. This protein functions as
a modifier of endothelial cell migration and proliferation, as well as an angiogenic factor. It acts as a mitogen for
a variety of mesoderm- and neuroectoderm-derived cells in vitro, thus is thought to be involved in organogenesis.
Multiple alternatively spliced variants encoding different isoforms have been described. (provided by RefSeq, Jan
2009)

UniProtKB/Swiss-Prot: FGF1_HUMAN, P05230
Function: Plays an important role in the regulation of cell survival, cell division, angiogenesis, cell differentiation
and cell migration. Functions as potent mitogen in vitro

Gene Wiki entry for FGF1


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000005.9  NC_018916.1  NT_029289.11  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the FGF1 gene promoter:
         PPAR-gamma1   AP-1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmids (see all 4): FGF1 promoter sequence
   Search SABiosciences Chromatin IP Primers for FGF1

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat FGF1


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 5q31   Ensembl cytogenetic band:  5q31.3   HGNC cytogenetic band: 5q31.3-q33.2

FGF1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
FGF1 gene location

GeneLoc information about chromosome 5         GeneLoc Exon Structure

GeneLoc location for GC05M141953:  view genomic region     (about GC identifiers)

Start:
141,971,743 bp from pter      End:
142,077,635 bp from pter
Size:
105,893 bases      Orientation:
minus strand
ORGUL member locations:
Legend (see complete legend)

  • n407227
  • n333721
  • n340669
  • n334117
141971742 142024689 142077635 chr5

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: FGF1_HUMAN, P05230 (See protein sequence)
Recommended Name: Fibroblast growth factor 1 precursor  
Size: 155 amino acids; 17460 Da
Subunit: Monomer. Homodimer. Interacts with FGFR1, FGFR2, FGFR3 and FGFR4. Affinity between fibroblast growth factors
(FGFs) and their receptors is increased by heparan sulfate glycosaminoglycans that function as coreceptors. Found in a
complex with FGFBP1, FGF1 and FGF2. Interacts with FGFBP1. Part of a Cu(2+)-dependent multiprotein aggregate
containing FGF1, S100A13 and SYT1. Interacts with SYT1 (By similarity). Interacts with S100A13. Interacts with LRRC59.
Interacts with CSNKA, CSNKB and FIBP. While binding with LRRC59, CSNKA and FIBP seem mutually exclusive, CSNKB and
FIBP may cooperatively interact with FGF1
Subcellular location: Secreted. Cytoplasm. Cytoplasm, cell cortex. Cytoplasm, cytosol. Nucleus. Note=Lacks a cleavable
signal sequence. Within the cytoplasm, it is transported to the cell membrane and then secreted by a non-classical
pathway that requires Cu(2+) ions and S100A13. Secreted in a complex with SYT1 (By similarity). Binding of exogenous
FGF1 to FGFR facilitates endocytosis followed by translocation of FGF1 across endosomal membrane into the cytosol.
Nuclear import from the cytosol requires the classical nuclear import machinery, involving proteins KPNA1 and KPNB1,
as well as LRRC59
6/87 PDB 3D structures from and Proteopedia for FGF1 (see all 87):
1AXM (3D)        1DJS (3D)        1DZC (3D)        1DZD (3D)        1E0O (3D)        1EVT (3D)    
Secondary accessions: B2R5T0 D3DQF2 P07502 Q16588
Alternative splicing: 2 isoforms:  P05230-1   P05230-2   

Explore the universe of human proteins at neXtProt for FGF1: NX_P05230

Post-translational modifications:

  • In the nucleus, phosphorylated by PKC/PRKCD1
  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_P05230

  • FGF1 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins (14 alternative transcripts): 
    NP_000791.1  NP_001138364.1  NP_001138406.1  NP_001138407.1  NP_001244134.1  NP_001244135.1  NP_001244136.1  NP_001244137.1  
    NP_001244138.1  NP_001244139.1  NP_001244140.1  NP_001244141.1  NP_149127.1  NP_149128.1  

    ENSEMBL proteins: 
     ENSP00000352329   ENSP00000367285   ENSP00000338548   ENSP00000354231   ENSP00000383969  
     ENSP00000404742   ENSP00000396195   ENSP00000378005   ENSP00000399458  
    Reactome Protein details: P05230
    Human Recombinant Protein Products: 
    EMD Millipore Purified and/or Recombinant FGF1 Protein
    R&D Systems Recombinant & Natural Proteins for FGF1 (FGF acidic)
    Browse recombinant and purified proteins available from Enzo Life Sciences
    OriGene Purified Proteins (see all 2): FGF1
    OriGene Protein Over-expression Lysate (see all 4): FGF1
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    GenScript Purified and Recombinant Proteins for FGF1
    Novus Biologicals FGF1 Proteins
    Novus Biologicals FGF1 Lysates
    Sino Biological Recombinant Protein for FGF1
    ProSpec Recombinant Protein for FGF1
    Uscn Proteins for FGF1

    Gene Ontology (GO): 5/8 cellular component terms (GO ID links to tree view) (see all 8):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005576extracellular region TAS--
    GO:0005578proteinaceous extracellular matrix IEA--
    GO:0005615extracellular space IDA18400376
    GO:0005634nucleus ----
    GO:0005730nucleolus IEA--


    FGF1 for ontologies           About GeneDecksing



    FGF1 Antibody Products: 
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    Uscn ELISAs and CLIAs for FGF1


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    FGF1 for domains           About GeneDecksing

    3 InterPro domains/families:
     IPR002348 IL1_HBGF
     IPR008996 Cytokine_IL1-like
     IPR002209 GF_heparin-bd

    Graphical View of Domain Structure for InterPro Entry P05230

    ProtoNet protein and cluster: P05230

    2 Blocks protein families:
    IPB002209 Heparin binding growth factor family signature
    IPB002348 IL1/HBGF family signature


    UniProtKB/Swiss-Prot: FGF1_HUMAN, P05230
    Similarity: Belongs to the heparin-binding growth factors family


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:

         UniProtKB/Swiss-Prot: FGF1_HUMAN, P05230
    Function: Plays an important role in the regulation of cell survival, cell division, angiogenesis, cell differentiation
    and cell migration. Functions as potent mitogen in vitro

         Genatlas biochemistry entry for FGF1:
    fibroblast growth factor 1,acidic (endothelial cell),associated with S100A13 and p40 extracellular domain of
    synaptotagmin 1 (SYT1) for the release of signal peptide-less FGF1 in a temperature stress-induced pathway,mainly
    expressed in brain,and delinating a retrocaudal boundary in the granule cell layer of the (murine) cerebellar
    cortex,also expressed in the retina (accessible to pharmacologic regulation)

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    hsa-miR-579 hsa-miR-193a-3p hsa-miR-3194-5p hsa-miR-330-5p hsa-miR-300 hsa-miR-15a hsa-miR-485-3p hsa-miR-4314
    SwitchGear 3'UTR luciferase reporter plasmidFGF1 3' UTR sequence
    Inhib. RNA
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    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for FGF1 (see all 7)
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    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat FGF1

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    Clone
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    GenScript: all cDNA clones in your preferred vector (see all 6): FGF1 (NM_001144934)
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    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat FGF1 

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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for FGF1

    Gene Ontology (GO): 5/6 molecular function terms (GO ID links to tree view) (see all 6):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005104fibroblast growth factor receptor binding IPI12815063
    GO:0005515protein binding IPI14732692
    GO:0008083growth factor activity IDA--
    GO:0008201heparin binding IDA--
    GO:0030544Hsp70 protein binding IEA--


    FGF1 for ontologies           About GeneDecksing


    2 GenomeRNAi human phenotypes for FGF1:
     Increased G1 DNA content  Increased number of mitotic ce 

    Animal Models:
         Mouse knock-out Fgf1tm1Bas for FGF1
         4 MGI mutant phenotypes (inferred from 1 allele(MGI details for Fgf1):
     hematopoietic system  homeostasis/metabolism  nervous system  normal 

    FGF1 for phenotypes           About GeneDecksing


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways - 5/33 super-pathways (see all 33About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1FGFR2c binds to FGF
    8/18 pathways (see all 18)
    FGFR2c binds to FGF1.00
    FGFR4 ligand binding and activation0.73
    FGFR2c ligand binding and activation1.00
    FGFR1c ligand binding and activation0.71
    FGFR3c ligand binding and activation0.79
    Signaling by activated point mutants of FGFR10.71
    FGFR3 ligand binding and activation0.79
    FGFR1 ligand binding and activation0.59
    2Apoptotic Pathways in Synovial Fibroblasts
    8/14 pathways (see all 14)
    Apoptotic Pathways in Synovial Fibroblasts1.00
    ERK5 Signaling0.61
    p53 Mediated Apoptosis0.84
    eIF2 Pathway0.60
    Mitochondrial Apoptosis0.73
    Rac1 Pathway0.58
    Telomerase Components in Cell Signaling0.72
    Nuclear Receptor Activation by Vitamin-A0.57
    3Signaling by FGFR
    8/12 pathways (see all 12)
    Signaling by FGFR1.00
    DAP12 signaling0.83
    Downstream signaling of activated FGFR0.92
    Signaling by EGFR in Cancer0.83
    Signaling by FGFR in disease0.91
    DAP12 interactions0.76
    Signaling by ERBB20.89
    Signaling by PDGF0.72
    4PIP3 activates AKT signaling
    8/10 pathways (see all 10)
    PI-3K cascade1.00
    PI3K/AKT activation0.97
    PIP3 activates AKT signaling1.00
    GAB1 signalosome0.96
    PI3K/AKT Signaling in Cancer1.00
    Constitutive PI3K/AKT Signaling in Cancer0.88
    PI3K events in ERBB2 signaling1.00
    Signaling by SCF-KIT0.72
    5IRS-related events
    IRS-related events1.00
    Signaling by Type 1 Insulin-like Growth Factor 1 Receptor (IGF1R)0.90
    IRS-mediated signalling0.98
    IGF1R signaling cascade0.90
    Insulin receptor signalling cascade0.94
    PI3K Cascade0.84
    IRS-related events triggered by IGF1R0.93
    Signaling by Insulin receptor0.74

    Pathway sources
    See GeneCards unified pathways
    Show all pathways

    1 EMD Millipore Pathway for FGF1
        Development FGF-family signaling

    5/59 Downloadable PowerPoint Slides of QIAGEN Pathway Central Maps for FGF1 (see all 59)
        Nuclear Receptor Activation by Vitamin-A
    Paxillin Interactions
    Telomerase Components in Cell Signaling
    Mitochondrial Apoptosis
    Molecular Mechanisms of Cancer

    2 Cell Signaling Technology (CST) Pathways for FGF1
        Angiogenesis
    Tyrosine Kinases / Adaptors

    1 GeneGo (Thomson Reuters) Pathway for FGF1
        Development FGF-family signaling

    4 BioSystems Pathways for FGF1 
        Regulation of Actin Cytoskeleton
    Integrated Pancreatic Cancer Pathway
    Integrated Pancreatic Cancer Pathway
    FGF signaling pathway

    5/61        Reactome Pathways for FGF1 (see all 61)
        FGFR2 ligand binding and activation
    FGFR ligand binding and activation
    Signaling by EGFR in Cancer
    Signaling by FGFR2 mutants
    Downstream signal transduction


    4         Kegg Pathways  (Kegg details for FGF1):
        MAPK signaling pathway
    Regulation of actin cytoskeleton
    Pathways in cancer
    Melanoma


    FGF1 for pathways           About GeneDecksing

    Interactions:

        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for FGF1

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    5/37 Interacting proteins for FGF1 (P052301, 2, 3 ENSP000003385484) via UniProtKB, MINT, STRING, and/or I2D (see all 37)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    FGFR2P218021, 2, 3, ENSP000004102944EBI-698068,EBI-1028658 MINT-25002 I2D: score=4 STRING: ENSP00000410294
    FGFR3P226071, 3, ENSP000002607954EBI-698068,EBI-348399 I2D: score=4 STRING: ENSP00000260795
    CSNK2A2P197843, ENSP000002625064I2D: score=2 STRING: ENSP00000262506
    CSNK2BP678703, ENSP000003650254I2D: score=2 STRING: ENSP00000365025
    FGFBP1Q145123, ENSP000002599884I2D: score=2 STRING: ENSP00000259988
    About this table

    Gene Ontology (GO): 5/23 biological process terms (GO ID links to tree view) (see all 23):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0001525angiogenesis IEA--
    GO:0001759organ induction IEA--
    GO:0001934positive regulation of protein phosphorylation IEA--
    GO:0007165signal transduction NAS3778488
    GO:0007243intracellular protein kinase cascade ----


    FGF1 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section

    FGF1 for compounds           About GeneDecksing

    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for FGF1

    1 HMDB Compound for FGF1    About this table
    CompoundSynonyms CAS #PubMed Ids
    HeparinArteven (see all 17)9005-49-6--

    8 DrugBank Compounds for FGF1    About this table
    CompoundSynonyms CAS #TypeActionsPubMed Ids
    Naphthalene Trisulfonate-- --target--17139284 17016423 10592235
    Pentosan Polysulfate-- 37300-21-3targetantagonist8867461 17071728 8946244
    Sucrose Octasulfate-- 57680-56-5target--17139284 17016423 10592235
    Formic AcidAminic acid (see all 5)64-18-6target--17139284 17016423
    N,O6-Disulfo-Glucosamine-- --target--17139284 17016423
    O2-Sulfo-Glucuronic Acid-- --target--17139284 17016423
    5-AMINO-NAPHTALENE-2-MONOSULFONATE-- --target--10592235
    AmlexanoxAmlexanox [USAN:INN:JAN] (see all 3)68302-57-8targetinhibitor16300395

    10/92 Novoseek chemical compound relationships for FGF1 gene (see all 92)    About this table
    Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    heparin 78.8 489 10413500 (10), 7638745 (8), 10664506 (8), 10226073 (8) (see all 99)
    amlexanox 75.2 25 20178375 (4), 18164517 (2), 16300395 (2), 9712836 (2) (see all 6)
    inositol hexasulfate 73.2 9 7521397 (3), 8950275 (2), 1721051 (1), 10848963 (1)
    sucrose octasulfate 73 23 7692970 (7), 7520817 (3), 8565003 (2), 19034645 (1) (see all 5)
    safrole oxide 72.8 3 15763947 (1), 11931706 (1), 13678651 (1)
    heparan sulfate 70.1 64 10362842 (5), 10673367 (5), 9516424 (4), 7537691 (3) (see all 24)
    tyrosine 59 81 11162655 (4), 7693700 (3), 9647656 (3), 10413500 (3) (see all 54)
    su5402 57.5 1 11146443 (1)
    amanitin 51.6 2 9003041 (1), 9406911 (1)
    vegf 51.2 85 9704334 (7), 14764221 (4), 10451491 (4), 11352499 (3) (see all 37)

    Search CenterWatch for drugs/clinical trials and news about FGF1 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for FGF1 gene (14 alternative transcripts): 
    NM_000800.4  NM_001144892.2  NM_001144934.1  NM_001144935.1  NM_001257205.1  NM_001257206.1  NM_001257207.1  NM_001257208.1  
    NM_001257209.1  NM_001257210.1  NM_001257211.1  NM_001257212.1  NM_033136.3  NM_033137.2  

    Unigene Cluster for FGF1:

    Fibroblast growth factor 1 (acidic)
    Hs.483635  [show with all ESTs]
    Unigene Representative Sequence: NM_000800
    12 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000359370(uc011dbi.2 uc003lmm.3 uc003lmn.4 uc003lmp.4 uc003lmq.3 uc010jgj.3 uc003lmr.3 uc003lms.4 uc021yew.1)
    ENST00000378046 ENST00000337706 ENST00000360966 ENST00000489937 ENST00000407758
    ENST00000494344 ENST00000441680 ENST00000419524 ENST00000494579 ENST00000394496
    ENST00000411960

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    8/54 QIAGEN miScript miRNA Assays for microRNAs that regulate FGF1 (see all 54):
    hsa-miR-579 hsa-miR-193a-3p hsa-miR-3194-5p hsa-miR-330-5p hsa-miR-300 hsa-miR-15a hsa-miR-485-3p hsa-miR-4314
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    Additional cDNA sequence: 

    AK289762.1 AK312301.1 BC032697.1 DQ655917.2 L01485.1 L01487.1 M13361.1 M60515.1 
    M60516.1 M74028.1 S67291.1 S67292.1 S67294.1 X51943.1 X65778.1 X65779.1 

    14 DOTS entries:

    DT.75172191  DT.316852  DT.120822824  DT.100755318  DT.120822956  DT.316853  DT.99999797  DT.120822822 
    DT.95174755  DT.100649059  DT.120822823  DT.120822839  DT.120822945  DT.120822952 

    24/130 AceView cDNA sequences (see all 130):

    BX119756 M60515 AI082417 BQ006675 S67292 NM_000800 AA918107 BE464377 
    S67294 AA348518 M74028 CF127400 F06068 S67291 AI359575 L01487 
    AI245781 NM_033137 BX444567 BQ876462 N47796 CD634782 AA877217 AA348519 

    GeneLoc Exon Structure

    5/16 Alternative Splicing Database (ASD) splice patterns (SP) for FGF1 (see all 16)    About this scheme

    ExUns: 1 ^ 2a · 2b · 2c · 2d · 2e ^ 3a · 3b · 3c · 3d ^ 4 ^ 5 ^ 6 ^ 7a · 7b ^ 8a · 8b ^ 9a · 9b ^ 10a · 10b · 10c · 10d · 10e · 10f · 10g ·
    SP1:        -     -     -                 -     -     -     -     -     -     -     -     -                                                                     
    SP2:                                      -     -     -     -     -     -     -     -     -                                                                     
    SP3:                                      -     -     -     -     -           -     -     -                                                                     
    SP4:                                      -     -     -     -     -     -     -     -     -                                                                     
    SP5:                                      -     -     -     -     -     -     -     -     -                                                                     

    ExUns: 10h · 10i · 10j
    SP1:                  
    SP2:                  
    SP3:                  
    SP4:                  
    SP5:                  


    ECgene alternative splicing isoforms for FGF1

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    FGF1 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: GCTGAAGGGG

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image

    FGF1 expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table
    2 LifeMap In Vivo Development Anatomical Compartments/Cells 
    Tissue Anatomical Compartment CellCategory (developmental path)
    EndotheliumMicrovesselsPericytesPericytes
    Gut TubeVentral Foregut EndodermGut Tube
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization
    Stem Cell Differentiation: 2 LifeMap Cells 
    NameCategory
    Nkx2-1 GFP+ cells (Efficient derivation...)
    Cardiomyocyte-like cells (Spontaneous differen...)

    See FGF1 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for FGF1

    SOURCE GeneReport for Unigene cluster: Hs.483635

    UniProtKB/Swiss-Prot: FGF1_HUMAN, P05230
    Tissue specificity: Predominantly expressed in kidney and brain. Detected at much lower levels in heart and skeletal
    muscle

        SABiosciences Expression via Pathway-Focused PCR Arrays including FGF1 (see all 8): 
              Osteogenesis in human mouse rat
              Growth Factors in human mouse rat
              Angiogenic Growth Factors in human mouse rat
              Angiogenesis in human mouse rat
              Inflammatory Response & Autoimmunity 384HT in human mouse rat

    Primer
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for FGF1

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of animals.

    Orthologs for FGF1 gene from 5/13 species (see all 13)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Fgf11 , 5 fibroblast growth factor 11, 5 90.54(n)1
    95.48(a)1
      18 (20.74 cM)5
    141641  NM_010197.31  NP_034327.11 
     388386735 
    chicken
    (Gallus gallus)
    Aves FGF11 fibroblast growth factor 1 (acidic) 79.78(n)
    90.32(a)
      396094  NM_205180.1  NP_990511.1 
    lizard
    (Anolis carolinensis)
    Reptilia FGF16
    --
    79(a)
    1 ↔ 1
    2(126772826-126790601)
    zebrafish
    (Danio rerio)
    Actinopterygii fgf1a1 fibroblast growth factor 1a 57.21(n)
    55.97(a)
      393733  NM_200760.1  NP_957054.1 
    honey bee
    (Apis mellifera)
    Insecta --
    --
    21(a)
    1 → many
    Group1.40(5135-9659)


    ENSEMBL Gene Tree for FGF1 (if available)
    TreeFam Gene Tree for FGF1 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for FGF1 gene
    FGF172  FGF82  FGF182  FGF22  
    18/19 SIMAP similar genes for FGF1 using alignment to 6 protein entries:     FGF1_HUMAN (see all proteins) (see all similar genes):
    FGFA    fgf gene    FGF2    FGF16    FGF9    FGF20
    FGF12    FGF18    FGF13    KGFLP1    FGF11    FGF14
    FGF6    FGF7    FGF10    FGF5    FGF22    FGF3

    FGF1 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/2135 NCBI SNPs in FGF1 are shown (see all 2135    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 5 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs753787601,2
    C,F,--141971249(+) TTAAAA/CTGATA 14 -- ds50011Minor allele frequency- C:0.07WA 118
    rs131790221,2
    C,F,H,--141971281(+) AATCTA/GTAGCT 14 -- ds500132Minor allele frequency- G:0.38EA NS NA WA CSA 3090
    rs105699561,2
    C--141971362(+) AAATG-/TTTTTTT 14 -- ds50011Minor allele frequency- TT:0.00CSA 2
    rs1424837821,2
    C--141971362(+) AAATG-/TTTTTTT 14 -- ds50010--------
    rs172176671,2
    C,F,--141971403(-) GCTCGT/AGCTTA 14 -- ds50012Minor allele frequency- A:0.02NS NA 106
    rs1863367161,2
    --141971404(+) AAGCAC/TGAGCC 14 -- ds50010--------
    rs1910282721,2
    --141971425(+) ACAATA/GGTAGC 14 -- ds50010--------
    rs1821371821,2
    --141971460(+) GAAGAA/GAAAGT 14 -- ds50010--------
    rs1852629431,2
    --141971471(+) TTCACC/TTGAGT 14 -- ds50010--------
    rs1911567021,2
    --141971602(+) CCTTCA/GCATTC 14 -- ds50010--------

    HapMap Linkage Disequilibrium report for FGF1 (141971743 - 142077635 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 12 variations for FGF1
         8 CNVs: 93265 81064 64323 51582 38592 81063 93266 93263
         4 Indels: 93268 93267 51583 93264
    Human Gene Mutation Database (HGMD): FGF1

    SABiosciences Cancer Mutation PCR Assays
    1 SABiosciences qBiomarker Copy Number PCR Array containing FGF1:
    Oncogenes & Tumor Suppressor Genes 384HC
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing FGF1
    DNA2.0 Custom Variant and Variant Library Synthesis for FGF1

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    FGF1 for disorders           About GeneDecksing

    OMIM gene information: 131220    OMIM disorders: --

    20/98 diseases for FGF1 (see all 98):    About MalaCards
    cleft lip/palate    amyotrophic lateral sclerosis    critical limb ischemia    barrett's esophagus
    intermittent claudication    cleft lip    squamous cell carcinoma    bladder transitional cell carcinoma
    lateral sclerosis    transitional cell carcinoma    chronic obstructive pulmonary disease    hypophosphatemia
    kaposi's sarcoma    intracranial aneurysm    oral squamous cell carcinoma    acquired immunodeficiency syndrome
    squamous cell carcinoma of the head and neck    esophageal squamous cell carcinoma    cleft palate    benign tumors

    6 diseases from the University of Copenhagen DISEASES database for FGF1:
    Cancer     Bone disease     Vascular disease     Hypophosphatemia
    Eye disease     X-linked hypophosphatemia

    10/94 Novoseek disease relationships for FGF1 gene (see all 94)    About this table

    Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    neovascularization 48.6 12 9443020 (2), 8685603 (2), 15273729 (1), 7533902 (1) (see all 8)
    tumors 38.8 114 9366526 (4), 7523040 (3), 9740144 (3), 11759058 (3) (see all 64)
    glioblastoma 37.9 12 7680120 (2), 7544453 (2), 1938597 (1), 7678925 (1) (see all 6)
    bladder carcinoma 31.3 8 8969864 (2), 15273729 (1), 11908679 (1), 1377428 (1) (see all 5)
    diphtheria 26.9 17 9437495 (2), 1281450 (2), 7511061 (2), 10355293 (1) (see all 7)
    peripheral ischemia 24.9 1 16389546 (1)
    hiv encephalitis 24.7 2 15358178 (1)
    leukemia nonlymphocytic acute 24.3 3 1717925 (1), 7514571 (1)
    solid tumor 23.7 5 17273733 (1), 19082464 (1), 16741658 (1), 11602651 (1)
    necrosis 20.4 35 1545152 (1), 8419185 (1), 8104340 (1), 10095201 (1) (see all 29)

    Genetic Association Database (GAD): FGF1
    Human Genome Epidemiology (HuGE) Navigator: FGF1 (20 documents)

    Export disorders for FGF1 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for FGF1 gene, integrated from 9 sources (see all 912):
    (articles sorted by number of sources associating them with FGF1)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Human endothelial cell growth factor: cloning, nucleotide sequence, and chromosome localization. (PubMed id 3523756)1, 2, 3 Jaye M.... Drohan W.N. (1986)
    2. Alternative splicing generates two forms of mRNA coding for human heparin-binding growth factor 1. (PubMed id 1693186)1, 2, 9 Chiu I.M.... Lehtoma K. (1990)
    3. The expression of acidic fibroblast growth factor (heparin-binding growth factor-1) and cytokine genes in human cardiac allografts and T cells. (PubMed id 7504343)1, 2, 9 Zhao X.M.... Miller G.G. (1993)
    4. Cloning and sequence analysis of the human acidic fibroblast growth factor gene and its preservation in leukemia patients. (PubMed id 1717925)1, 2, 9 Wang W.P.... Chiu I.M. (1991)
    5. An acidic fibroblast growth factor protein generated by alternate splicing acts like an antagonist. (PubMed id 1372643)1, 2, 9 Li Y.L....Turck E.J. (1992)
    6. 1H-NMR assignment and solution structure of human acidic fibroblast growth factor activated by inositol hexasulfate. (PubMed id 7521397)1, 2, 9 Pineda-Lucena A....Gimenez-Gallego G. (1994)
    7. Crystal structure of fibroblast growth factor receptor ectodomain bound to ligand and heparin. (PubMed id 11069186)1, 2, 9 Pellegrini L.... Blundell T.L. (2000)
    8. Three-dimensional structure of acidic fibroblast growth factor in solution: effects of binding to a heparin functional analog. (PubMed id 8950275)1, 2, 9 Pineda-Lucena A.... Gimenez-Gallego G. (1996)
    9. The release of fibroblast growth factor-1 from melanoma cells requires copper ions and is mediated by phosphatidylinositol 3-kinase/Akt intracellular signaling pathway. (PubMed id 18400376)1, 2, 9 Di Serio C....Tarantini F. (2008)
    10. Promoter polymorphism in fibroblast growth factor 1 gene increases risk of definite Alzheimer's disease. (PubMed id 15358178)1, 4, 9 Yamagata H....Kondo I. (2004)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Disorders
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 2246 HGNC: 3665 AceView: FGF1 Ensembl:ENSG00000113578 euGenes: HUgn2246
    ECgene: FGF1 Kegg: 2246 H-InvDB: FGF1

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for FGF1 Pharmacogenomics, SNPs, Pathways
    ATLAS Chromosomes in Cancer entry for FGF1 Genetics and Cytogenetics in Oncology and Haematology
    NIEHS-SNPshttp://egp.gs.washington.edu/data/fgf1/

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for FGF1 gene:
    Search GeneIP for patents involving FGF1

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
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    About This Section

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