Free for academic non-profit institutions. Other users need a Commercial license

FGD5P1 Gene(Pseudogene)

FYVE, RhoGEF And PH Domain Containing 5 Pseudogene 1

GCID:
GC03P013933
GIFtS:
17
Genes Participants
UDN Logo

Aliases for FGD5P1 Gene

Aliases for FGD5P1 Gene

  • FYVE, RhoGEF And PH Domain Containing 5 Pseudogene 1 2 3 5

External Ids for FGD5P1 Gene

Previous GeneCards Identifiers for FGD5P1 Gene

  • GC03P013984
  • GC03P013986
  • GC03P013990

Summaries for FGD5P1 Gene

GeneCards Summary for FGD5P1 Gene

FGD5P1 (FYVE, RhoGEF And PH Domain Containing 5 Pseudogene 1) is a Pseudogene. Among its related pathways are Hypothetical Craniofacial Development Pathway.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FGD5P1 Gene

Genomics for FGD5P1 Gene

Products:

  1. Regulatory Element

Regulatory Elements for FGD5P1 Gene

Enhancers for FGD5P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G013932 0.7 Ensembl 0.7 -0.2 -156 0.2 KLF1 L3MBTL2 NR4A1 NRF1 ZBTB11 E2F5 ZBTB40 GABPA TFDP1 ZNF766 FGD5P1 VN1R20P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FGD5P1 on UCSC Golden Path with GeneCards custom track

Genomic Location for FGD5P1 Gene

Chromosome:
3
Start:
13,933,056 bp from pter
End:
13,937,477 bp from pter
Size:
4,422 bases
Orientation:
Plus strand

Genomic View for FGD5P1 Gene

Genes around FGD5P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FGD5P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FGD5P1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for FGD5P1 Gene

Proteins for FGD5P1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for FGD5P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FGD5P1 Gene

Domains & Families for FGD5P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FGD5P1 Gene

Function for FGD5P1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FGD5P1 Gene

Localization for FGD5P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FGD5P1 Gene

Pathways & Interactions for FGD5P1 Gene

genes like me logo Genes that share pathways with FGD5P1: view

Pathways by source for FGD5P1 Gene

1 BioSystems pathway for FGD5P1 Gene

Interacting Proteins for FGD5P1 Gene

Gene Ontology (GO) - Biological Process for FGD5P1 Gene

None

No data available for SIGNOR curated interactions for FGD5P1 Gene

Drugs & Compounds for FGD5P1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for FGD5P1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for FGD5P1 Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FGD5P1 Gene

FYVE, RhoGEF and PH domain containing 5 pseudogene 1:
Representative Sequences:

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for FGD5P1 Gene

No ASD Table

Relevant External Links for FGD5P1 Gene

GeneLoc Exon Structure for
FGD5P1
ECgene alternative splicing isoforms for
FGD5P1

Expression for FGD5P1 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FGD5P1 Gene

mRNA expression in normal human tissues for FGD5P1 Gene
mRNA expression by GTEx for FGD5P1 Gene

mRNA differential expression in normal tissues according to GTEx for FGD5P1 Gene

This gene is overexpressed in Testis (x13.6).

NURSA nuclear receptor signaling pathways regulating expression of FGD5P1 Gene:

FGD5P1

SOURCE GeneReport for Unigene cluster for FGD5P1 Gene:

Hs.637770
genes like me logo Genes that share expression patterns with FGD5P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FGD5P1 Gene

Orthologs for FGD5P1 Gene

Evolution for FGD5P1 Gene

ENSEMBL:
Gene Tree for FGD5P1 (if available)
TreeFam:
Gene Tree for FGD5P1 (if available)

No data available for Orthologs for FGD5P1 Gene

Paralogs for FGD5P1 Gene

No data available for Paralogs for FGD5P1 Gene

Variants for FGD5P1 Gene

Sequence variations from dbSNP and Humsavar for FGD5P1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000952293 -- 13,934,490(+) CCAAG(A/G)ACGGG nc-transcript-variant
rs1001862530 -- 13,935,831(+) GGAGA(-/GGAGGAGG)GGAGG nc-transcript-variant, upstream-variant-2KB
rs1001956108 -- 13,936,102(+) CAGGA(A/G)GAACA nc-transcript-variant, upstream-variant-2KB
rs1002026846 -- 13,931,228(+) TCCAT(G/T)ACCTC upstream-variant-2KB
rs1002567258 -- 13,931,489(+) CAATC(C/T)ACTCC upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for FGD5P1 Gene

Variant ID Type Subtype PubMed ID
esv2724945 CNV deletion 23290073
esv34163 CNV loss 18971310
nsv1010313 CNV loss 25217958
nsv1011766 CNV gain 25217958
nsv3711 CNV insertion 18451855

Relevant External Links for FGD5P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FGD5P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FGD5P1 Gene

Disorders for FGD5P1 Gene

Relevant External Links for FGD5P1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FGD5P1

No disorders were found for FGD5P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FGD5P1 Gene

Publications for FGD5P1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for FGD5P1 Gene

Sources for FGD5P1 Gene

Content
Loading form....