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Aliases for FGD5P1 Gene

Aliases for FGD5P1 Gene

  • FYVE, RhoGEF And PH Domain Containing 5 Pseudogene 1 2 3

External Ids for FGD5P1 Gene

Previous GeneCards Identifiers for FGD5P1 Gene

  • GC03P013984
  • GC03P013986
  • GC03P013990

Summaries for FGD5P1 Gene

GeneCards Summary for FGD5P1 Gene

FGD5P1 (FYVE, RhoGEF And PH Domain Containing 5 Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FGD5P1 Gene

Genomics for FGD5P1 Gene

Genomic Location for FGD5P1 Gene

Start:
13,933,056 bp from pter
End:
13,937,477 bp from pter
Size:
4,422 bases
Orientation:
Plus strand

Genomic View for FGD5P1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FGD5P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FGD5P1 Gene

No data available for Regulatory Elements for FGD5P1 Gene

Proteins for FGD5P1 Gene

Post-translational modifications for FGD5P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FGD5P1 Gene

Domains for FGD5P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FGD5P1 Gene

Function for FGD5P1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for FGD5P1 Gene

Localization for FGD5P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FGD5P1 Gene

Pathways for FGD5P1 Gene

SuperPathways for FGD5P1 Gene

No Data Available

Interacting Proteins for FGD5P1 Gene

Gene Ontology (GO) - Biological Process for FGD5P1 Gene

None

No data available for Pathways by source for FGD5P1 Gene

Transcripts for FGD5P1 Gene

mRNA/cDNA for FGD5P1 Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FGD5P1 Gene

FYVE, RhoGEF and PH domain containing 5 pseudogene 1:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for FGD5P1

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for FGD5P1 Gene

No ASD Table

Relevant External Links for FGD5P1 Gene

GeneLoc Exon Structure for
FGD5P1
ECgene alternative splicing isoforms for
FGD5P1

Expression for FGD5P1 Gene

mRNA expression in normal human tissues for FGD5P1 Gene

mRNA differential expression in normal tissues according to GTEx for FGD5P1 Gene

This gene is overexpressed in Testis (13.6).

SOURCE GeneReport for Unigene cluster for FGD5P1 Gene Hs.637770

genes like me logo Genes that share expressions with FGD5P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for FGD5P1 Gene

Orthologs for FGD5P1 Gene

Evolution for FGD5P1 Gene

ENSEMBL:
Gene Tree for FGD5P1 (if available)
TreeFam:
Gene Tree for FGD5P1 (if available)

No data available for Orthologs for FGD5P1 Gene

Paralogs for FGD5P1 Gene

No data available for Paralogs for FGD5P1 Gene

Variants for FGD5P1 Gene

Sequence variations from dbSNP and Humsavar for FGD5P1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type MAF
rs4685050 -- 13,931,705(+) CCTCT(C/G)CCTCC upstream-variant-2KB
rs6784433 -- 13,932,532(+) CCACC(A/G)CTCAG upstream-variant-2KB
rs6791183 -- 13,934,406(+) GGCCC(C/T)GGTCC nc-transcript-variant
rs6808009 -- 13,932,292(+) TATGT(A/C)GCCGA upstream-variant-2KB
rs9811978 -- 13,931,202(+) CCACA(G/T)TTAAA upstream-variant-2KB

Relevant External Links for FGD5P1 Gene

HapMap Linkage Disequilibrium report
FGD5P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for FGD5P1 Gene

Disorders for FGD5P1 Gene

No disorders were found for FGD5P1 Gene.

No data available for UniProtKB/Swiss-Prot for FGD5P1 Gene

Publications for FGD5P1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3

Products for FGD5P1 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate FGD5P1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for FGD5P1
    • Block miRNA regulation of FGD5P1 using miScript Target Protectors

    Sources for FGD5P1 Gene

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