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Aliases for FGD5-AS1 Gene

Subcategory (RNA class) for FGD5-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FGD5-AS1 Gene

  • FGD5 Antisense RNA 1 2 3 5
  • FGD5 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for FGD5-AS1 Gene

Summaries for FGD5-AS1 Gene

GeneCards Summary for FGD5-AS1 Gene

FGD5-AS1 (FGD5 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FGD5-AS1 Gene

Genomics for FGD5-AS1 Gene

Regulatory Elements for FGD5-AS1 Gene

Enhancers for FGD5-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F015049 1.3 Ensembl ENCODE 9.8 -103.3 -103318 3.5 HDGF PKNOX1 ATF1 ARNT ZNF48 GLIS2 ELK1 GATA2 ZNF143 KDM4B CAPN7 COL6A4P1 FGD5-AS1 PIR43410 PIR32672
GH03F014946 1.1 ENCODE 11.3 -0.1 -136 4.7 HDGF PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF143 ZNF207 CAPN7 FGD5-AS1 SH3BP5-AS1 MRPS25 RBSN RPS3AP53 PIR42856
GH03F015063 1.1 ENCODE 9.5 -116.1 -116093 2.9 HDGF PKNOX1 CREB3L1 MLX ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF143 FGD5 CAPN7 FGD5-AS1 MRPS25 SH3BP5-AS1 GC03M015052 PIR50374
GH03F015010 1 ENCODE 10.1 -62.6 -62558 1.0 HDGF ATF1 PKNOX1 ARNT CREB3L1 ARID4B ZNF48 ZNF766 GATA2 KDM4B FGD5-AS1 PIR57178 GC03P014960
GH03F014958 0.9 Ensembl ENCODE 10.1 -10.6 -10553 2.4 ZNF146 ZNF280D HLF ASH2L EBF1 ZBTB40 NFIL3 ZNF318 IRF1 MLLT1 FGD5-AS1 RPS24P10 MRPS25 PIR42856
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FGD5-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for FGD5-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001358299 741 3001 HDGF PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF143 ZNF207

Genomic Location for FGD5-AS1 Gene

Chromosome:
3
Start:
14,920,347 bp from pter
End:
14,948,441 bp from pter
Size:
28,095 bases
Orientation:
Minus strand

Genomic View for FGD5-AS1 Gene

Genes around FGD5-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FGD5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FGD5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FGD5-AS1 Gene

Proteins for FGD5-AS1 Gene

Post-translational modifications for FGD5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FGD5-AS1 Gene

Domains & Families for FGD5-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FGD5-AS1 Gene

Function for FGD5-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FGD5-AS1 Gene

Localization for FGD5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FGD5-AS1 Gene

Pathways & Interactions for FGD5-AS1 Gene

SuperPathways for FGD5-AS1 Gene

No Data Available

Interacting Proteins for FGD5-AS1 Gene

Gene Ontology (GO) - Biological Process for FGD5-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FGD5-AS1 Gene

Transcripts for FGD5-AS1 Gene

mRNA/cDNA for FGD5-AS1 Gene

(10) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FGD5-AS1 Gene

FGD5 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FGD5-AS1 Gene

No ASD Table

Relevant External Links for FGD5-AS1 Gene

GeneLoc Exon Structure for
FGD5-AS1
ECgene alternative splicing isoforms for
FGD5-AS1

Expression for FGD5-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for FGD5-AS1 Gene

SOURCE GeneReport for Unigene cluster for FGD5-AS1 Gene:

Hs.517821
genes like me logo Genes that share expression patterns with FGD5-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for FGD5-AS1 Gene

Orthologs for FGD5-AS1 Gene

Evolution for FGD5-AS1 Gene

ENSEMBL:
Gene Tree for FGD5-AS1 (if available)
TreeFam:
Gene Tree for FGD5-AS1 (if available)

No data available for Orthologs for FGD5-AS1 Gene

Paralogs for FGD5-AS1 Gene

No data available for Paralogs for FGD5-AS1 Gene

Variants for FGD5-AS1 Gene

Sequence variations from dbSNP and Humsavar for FGD5-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1043794 -- 14,943,110(-) AAAGT(G/T)TTGAT nc-transcript-variant
rs1043911 -- 14,944,494(-) ATACA(C/T)CTATC nc-transcript-variant
rs1043913 -- 14,944,351(-) TCCAT(A/T)TTCCT nc-transcript-variant
rs10487 -- 14,943,066(+) TATTA(A/G)TAATT nc-transcript-variant
rs111433869 -- 14,948,771(+) GAAGA(C/G)GTTTT intron-variant, upstream-variant-2KB, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for FGD5-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv834620 CNV gain 17160897
nsv1074573 CNV deletion 25765185
esv3595377 CNV gain 21293372
esv2759130 CNV gain 17122850

Relevant External Links for FGD5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FGD5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FGD5-AS1 Gene

Disorders for FGD5-AS1 Gene

Relevant External Links for FGD5-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FGD5-AS1

No disorders were found for FGD5-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FGD5-AS1 Gene

Publications for FGD5-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for FGD5-AS1 Gene

Sources for FGD5-AS1 Gene

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