Free for academic non-profit institutions. Other users need a Commercial license

Aliases for FGD5-AS1 Gene

Subcategory (RNA class) for FGD5-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for FGD5-AS1 Gene

  • FGD5 Antisense RNA 1 2 3 5
  • FGD5 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for FGD5-AS1 Gene

Summaries for FGD5-AS1 Gene

GeneCards Summary for FGD5-AS1 Gene

FGD5-AS1 (FGD5 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FGD5-AS1 Gene

Genomics for FGD5-AS1 Gene

Regulatory Elements for FGD5-AS1 Gene

Enhancers for FGD5-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G014288 1.5 Ensembl ENCODE dbSUPER 11.2 +658.1 658129 3.6 HDGF PKNOX1 FOXA2 ATF1 ZBTB7B TCF12 ZNF121 FOS JUNB TSHZ1 LINC01267 FGD5-AS1 SLC6A6 ENSG00000255021 LOC105376958
GH03G014946 1.4 Ensembl ENCODE 11.3 -0.1 -136 4.7 HDGF PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 ZBTB7B YY1 SLC30A9 ZNF766 CAPN7 FGD5-AS1 SH3BP5-AS1 METTL6 MRPS25 RBSN RPS3AP53 PIR42856
GH03G014248 1 ENCODE 11.2 +699.3 699269 1.6 HDGF ATF1 FOXA2 PKNOX1 ZBTB7B TCF12 FOS JUNB TSHZ1 ZNF623 LINC01267 FGD5-AS1 SLC6A6 ENSG00000228242 LOC105376958 ENSG00000255021
GH03G015049 1.1 ENCODE 9.9 -103.3 -103318 3.5 HDGF PKNOX1 CREB3L1 ARNT SIN3A ZNF766 ZNF143 TBX21 ZNF592 MEF2D CAPN7 COL6A4P1 FGD5-AS1 PIR32672 PIR43410
GH03G015063 1.1 ENCODE 9.5 -116.1 -116093 2.9 HDGF PKNOX1 CREB3L1 MLX AGO1 ARID4B SIN3A DMAP1 YY1 SLC30A9 FGD5-AS1 MRPS25 SH3BP5-AS1 PIR50374 GC03M015052
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FGD5-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for FGD5-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

Genomic Location for FGD5-AS1 Gene

14,920,347 bp from pter
14,948,441 bp from pter
28,095 bases
Minus strand

Genomic View for FGD5-AS1 Gene

Genes around FGD5-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FGD5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FGD5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FGD5-AS1 Gene

Proteins for FGD5-AS1 Gene

Post-translational modifications for FGD5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FGD5-AS1 Gene

Domains & Families for FGD5-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FGD5-AS1 Gene

Function for FGD5-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FGD5-AS1 Gene

Localization for FGD5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FGD5-AS1 Gene

Pathways & Interactions for FGD5-AS1 Gene

SuperPathways for FGD5-AS1 Gene

No Data Available

Interacting Proteins for FGD5-AS1 Gene

Gene Ontology (GO) - Biological Process for FGD5-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for FGD5-AS1 Gene

Drugs & Compounds for FGD5-AS1 Gene

No Compound Related Data Available

Transcripts for FGD5-AS1 Gene

mRNA/cDNA for FGD5-AS1 Gene

(10) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FGD5-AS1 Gene

FGD5 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FGD5-AS1 Gene

No ASD Table

Relevant External Links for FGD5-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for FGD5-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FGD5-AS1 Gene

SOURCE GeneReport for Unigene cluster for FGD5-AS1 Gene:

genes like me logo Genes that share expression patterns with FGD5-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FGD5-AS1 Gene

Orthologs for FGD5-AS1 Gene

Evolution for FGD5-AS1 Gene

Gene Tree for FGD5-AS1 (if available)
Gene Tree for FGD5-AS1 (if available)

No data available for Orthologs for FGD5-AS1 Gene

Paralogs for FGD5-AS1 Gene

No data available for Paralogs for FGD5-AS1 Gene

Variants for FGD5-AS1 Gene

Sequence variations from dbSNP and Humsavar for FGD5-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000112613 -- 14,948,450(+) GCCCA(A/C/G)ATAGG intron-variant, upstream-variant-2KB
rs1000339762 -- 14,946,524(+) AATAT(A/T)ATAAG intron-variant, upstream-variant-2KB
rs1000863066 -- 14,943,082(+) AACTT(A/G)GCATA nc-transcript-variant
rs1000895669 -- 14,942,783(+) ATTAC(A/G)TGAGG nc-transcript-variant
rs1000956778 -- 14,943,550(+) CACAA(C/G)GGCTG nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for FGD5-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2759130 CNV gain 17122850
esv3595377 CNV gain 21293372
nsv1074573 CNV deletion 25765185
nsv834620 CNV gain 17160897

Relevant External Links for FGD5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FGD5-AS1 Gene

Disorders for FGD5-AS1 Gene

Relevant External Links for FGD5-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for FGD5-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FGD5-AS1 Gene

Publications for FGD5-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for FGD5-AS1 Gene

Sources for FGD5-AS1 Gene

Loading form....