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Aliases & Descriptions for FGA
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases Fib2 2 MGC119422 2 MGC119423 2 MGC119425 2
Descriptions fibrinogen alpha chain 2 fibrinogen, A alpha polypeptide 1 , 2 fibrinogen, alpha chain, isoform alpha preproprotein 2 fibrinogen, alpha polypeptide 2
Search outside databases for aliases for FGA genePrevious GC identifers: GC04M156353 GC04M155892 GC04M155970 GC04M156081 GC04M155826
Summaries for FGA (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for FGA : The protein encoded by this gene is the alpha component of fibrinogen, a blood-borne glycoproteincomprised of three pairs of nonidentical polypeptide chains. Following vascular injury, fibrinogenis cleaved by thrombin to form fibrin which is the most abundant component of blood clots. Inaddition, various cleavage products of fibrinogen and fibrin regulate cell adhesion and spreading,display vasoconstrictor and chemotactic activities, and are mitogens for several cell types.Mutations in this gene lead to several disorders, including dysfibrinogenemia, hypofibrinogenemia,afibrinogenemia and renal amyloidosis. Alternative splicing results in two isoforms which vary inthe carboxy-terminus. [provided by RefSeq] UniProtKB/Swiss-Prot: FIBA_HUMAN, P02671 Function : Fibrinogen has a double function: yielding monomers that polymerize into fibrin andacting as a cofactor in platelet aggregation
Gene Wiki entry for FGA (Fibrinogen_alpha_chain)
Genomic Location for FGA
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the FGA gene Entrez Gene cytogenetic band: 4q28 Ensembl cytogenetic band: 4q32.1 HGNC cytogenetic band: 4q28 FGA Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 4 GeneLoc Exon Structure
GeneLoc location for GC04M155723:
(about GC identifiers )
Start:
155,723,730 bp from pter
End:
155,731,368 bp from pter
Size:
7,639 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000004.10 NT_016354.18 Proteins for FGA
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: FIBA_HUMAN, P02671 (See
protein sequence )Recommended Name: Fibrinogen alpha chain precursor Size : 866 amino acids; 94973 Da
Subunit : Heterohexamer; disulfide linked. Contains 2 sets of 3 non-identical chains (alpha, betaand gamma). The 2 heterotrimers are in head to head conformation with the N-termini in a smallcentral domain
Subcellular location : Secreted
PDB structures from and Proteopedia : 1BBR (3D)
 1FZA (3D)
 1FZB (3D)
 1FZC (3D)
 1FZD (3D)
 1FZE (3D)
 1FZF (3D)
 1FZG (3D)
 1LT9 (3D)
 1LTJ (3D)
 1N86 (3D)
 1N8E (3D)
 1RE3 (3D)
 1RE4 (3D)
 1RF0 (3D)
 1RF1 (3D)
 1YCP (3D)
 2A45 (3D)
 2FFD (3D)
 2H43 (3D)
 2HLO (3D)
 2HOD (3D)
 2HPC (3D)
 2OYH (3D)
 2OYI (3D)
 2Q9I (3D)
 2Z4E (3D)
 3BVH (3D)
 3E1I (3D)
 
Secondary accessions : Q9BX62 Q9UCH2Alternative splicing : 2 isoforms : P02671-1 P02671-2
Post-translational modifications:
The alpha chain is not glycosylated1
Forms F13A-mediated cross-links between a glutamine and the epsilon-amino group of a lysineresidue, forming fibronectin-fibrinogen heteropolymers1
About one-third of the alpha chains in the molecules in blood were found to be phosphorylated1
Conversion of fibrinogen to fibrin is triggered by thrombin, which cleaves fibrinopeptides A and Bfrom alpha and beta chains, and thus exposes the N-terminal polymerization sites responsible forthe formation of the soft clot. The soft clot is converted into the hard clot by factor XIIIAwhich catalyzes the epsilon-(gamma-glutamyl)lysine cross-linking between gamma chains (stronger)and between alpha chains (weaker) of different monomers1
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_000499.1 NP_068657.1 ENSEMBL proteins: ENSP00000384151 ENSP00000385981 ENSP00000306361 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 5 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for FGA: Assays for FGA:
Protein
Domains/ Families for FGA(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P02671 ProtoNet protein and cluster: P02671
1 Blocks protein family : IPB002181 Fibrinogen UniProtKB/Swiss-Prot: FIBA_HUMAN, P02671 Domain : A long coiled coil structure formed by 3 polypeptide chains connects the central nodule tothe C-terminal domains (distal nodules). The long C-terminal ends of the alpha chains fold back,contributing a fourth strand to the coiled coil structure Similarity : Contains 1 fibrinogen C-terminal domain
Gene Function for FGA
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_021871 Applied Biosystems Silencer ® siRNAs for FGA Sigma-Aldrich siRNA and siRNA Panels for FGA Sigma-Aldrich shRNA for FGA Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_000508                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_000508                                  untagged cDNA clones in CMV expression vector (see all 3 ): BC020764  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_000508 UniProtKB/Swiss-Prot: FIBA_HUMAN, P02671 Function : Fibrinogen has a double function: yielding monomers that polymerize into fibrin andacting as a cofactor in platelet aggregation
Genatlas biochemistry entry for FGA :fibrinogen,alpha polypeptide,63kDa (see FG@)
14 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Fga) :3 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for FGA
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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3 Sigma-Aldrich "Your Favorite Gene" Pathways for FGA (Your Favorite Gene powered by Ingenuity) Gene Network CentralTM Interacting Genes and Proteins Network for FGA 5/47 Interacting proteins for FGA (ENSP00000306361 3 P02671 1 , 2 ) via UniProtKB, MINT, and/or STRING (see all 47
)Interactant Interaction Details GeneCard External ID(s) ENSG00000206318 P48634 1 , 2 EBI-348571, EBI-347545 MINT-62623 MINT-62721 MINT-62797 ENSG00000206427 P48634 1 , 2 EBI-348571, EBI-347545 MINT-62623 MINT-62721 MINT-62797 BAT2 P48634 1 , 2 EBI-348571, EBI-347545 MINT-62623 MINT-62721 MINT-62797 EBI-348571, EBI-347545 MINT-62623 MINT-62721 MINT-62797 BAT2 P48634 1 , 2 EBI-348571, EBI-347545 MINT-62623 MINT-62721 MINT-62797 EBI-348571, EBI-347545 MINT-62623 MINT-62721 MINT-62797 FGB ENSP00000306099 3 STRING (score=.999 )
About this table 5 Gene Ontology (GO) biological process terms (links to tree view) :
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Drugs & Compounds for FGA (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for FGA 10/34 Novoseek chemical compound relationships for FGA gene (see all 34
)
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
fibrinopeptide a
95.06
50
8459055 (4), 7539015 (4), 10369791 (3), 7646626 (3) (see all 26 )
fibrinogen
91.51
299
9916133 (3), 7903170 (2), 12706644 (2), 9308756 (2) (see all 99 )
hirugen
74.24
2
2380171 (1), 1590777 (1)
txb2
48.14
9
8329704 (2), 2146058 (1), 9702994 (1), 2109927 (1) (see all 7 )
cuprophan
45.32
1
1325310 (1)
rsai
38.75
3
7913910 (2), 15795544 (1)
polysulfone
38.22
2
1829439 (1), 1325310 (1)
an 69
35.51
1
1601510 (1)
thromboxane a2
32.62
5
8291501 (1), 7732975 (1), 8746831 (1), 1826875 (1)
cacl2
26.66
2
1829631 (1), 1811336 (1)
About this table
Transcripts for FGA(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
OriGene , Expression Assays from Applied Biosystems )About This Section
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_021871 Sigma-Aldrich siRNA and siRNA Panels for FGA Sigma-Aldrich shRNA for FGA Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_000508 NM_021871
REFSEQ mRNAs for FGA gene (2 alternative transcripts): NM_000508.3 NM_021871.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_000508 NM_021871
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_000508                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_000508                                  untagged cDNA clones in CMV expression vector (see all 3 ): BC020764  
Additional cDNA sequence: AK290559.1 BC020764.1 BC070246.1 BC098280.1 BC099706.1 BC099720.1 BC101935.1 BC105803.1 CR594140.1 CR608055.1 CR608485.1 CR613050.1 CR613778.1 CR617717.1 CR618112.1 CR619844.1 CR625737.1 J00127.1 J00128.1 K02272.1 M26878.1 M58569.1
24/26 DOTS entries (see all 26
): DT.453599 DT.100697222 DT.92460971 DT.100760439 DT.92460957 DT.100697218 DT.121267490 DT.95201336 DT.95201310 DT.92460950 DT.100697203 DT.100697204 DT.100697197 DT.100697211 DT.100697226 DT.95187527 DT.121267502 DT.100645631 DT.100697207 DT.100697217 DT.121267493 DT.92460958 DT.92460970 DT.95201326
24/761 AceView cDNA sequences (see all 761
):BG566426 BX448672 T68170 BX462911 CB111957 AL531832 CR608485 T40106 AL531192 BX426651 AL557888 BX494158 AA345378 CR594140 AL532526 BX346172 BG533485 BG545208 CB156911 BX494953 AL531236 BX494836 BQ644180 AL531899
highest scoring ESTs for FGA :AA343657 AA693592 AI248502 AL531044 AL531192 AL531237 AL531263 AL531446 AL531515 AL531546
Unigene Cluster for FGA: Fibrinogen alpha chain Hs.351593 [show with all ESTs ] Unigene Representative Sequence: M58569 GeneLoc Exon Structure 3 Ensembl transcripts including schematic representations : ENST00000401984
ENST00000403106
ENST00000302053
Expression for FGA
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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FGA expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for FGA 1 / 2 / 3
5 probe-sets matching FGA gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: --SOURCE GeneReport for Unigene cluster: Hs.351593 Expression variation in blood from EXPOLDB for FGA
Orthologs for FGA
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for FGA gene from 5/9 species (see all 9
)
About this table Species with no ortholog for FGA ENSEMBL Gene Tree for FGA Paralogs for FGA (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for FGA gene FIBCD1 2 MFAP4 2 FCN2 2
SNPs/Variants for FGA (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for FGA (up to first 250kb)
Disorders & Mutations for FGA
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 134820 UniProtKB/Swiss-Prot: FIBA_HUMAN, P02671
Defects in FGA are a cause of congenital afibrinogenemia [MIM:202400]. This is a rareautosomal recessive disorder characterized by bleeding that varies from mild to severe and bycomplete absence or extremely low levels of plasma and platelet fibrinogen. The majority of casesof afibrinogenemia are due to truncating mutations Variations in position Arg-35 (the site of cleavage of fibrinopeptide a by thrombin) leadsto alpha-dysfibrinogenemias Defects in FGA are a cause of amyloidois type 8 (AMYL8) [MIM:105200]; also known assystemic non-neuropathic amyloidosis or Ostertag-type amyloidosis. AMYL8 is a hereditarygeneralized amyloidosis due to deposition of apolipoprotein A1, fibrinogen and lysozyme amyloids.Viscera are particularly affected. There is no involvement of the nervous system. Clinicalfeatures include renal amyloidosis resulting in nephrotic syndrome, arterial hypertension,hepatosplenomegaly, cholestasis, petechial skin rash
10/81 Novoseek disease relationships for FGA gene (see all 81
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
congenital afibrinogenemia
88.24
7
15946522 (2), 11460507 (1), 12406899 (1), 10891444 (1) (see all 5 )
afibrinogenemia
86.45
14
17295221 (2), 17393016 (1), 12406899 (1), 12511408 (1) (see all 9 )
dysfibrinogenemia
84.74
2
12706644 (1), 7485081 (1)
hypofibrinogenemia
70.71
8
8426084 (2), 7489960 (1), 17295221 (1), 18676163 (1)
thrombosis
68.12
11
1295502 (1), 8348763 (1), 7554626 (1), 1433937 (1) (see all 10 )
thrombophilia
68.01
8
8446931 (1), 8003387 (1), 2137945 (1), 8914220 (1) (see all 8 )
disseminated intravascular coagulation
67.40
16
8426084 (5), 11460518 (1), 9308756 (1), 8039760 (1) (see all 7 )
coagulopathy
56.51
7
7563081 (1), 18676163 (1), 8426084 (1), 7514043 (1) (see all 6 )
thromboembolism
46.79
5
8426084 (3)
bleeding
45.81
10
11342472 (1), 8408654 (1), 8291501 (1), 7485081 (1) (see all 9 )
About this table Human Gene Mutation Database : FGA Genetic Association Database: FGA Human Genome Epidemiology Navigator: FGA (41 documents)
Medical News for FGA (Possibly Related Articles in
Doctor's Guide )
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--
Publications for FGA (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/643 PubMed articles for FGA gene (see all 643
): Hereditary renal amyloidosis associated with a mutant fibrinogen alpha-chain. (PubMed id 8097946) 3, 4, 6 Benson M.D.... Correa R. (1993) Molecular basis for fibrinogen Dusart (A alpha 554 Arg-->Cys) and its association with abnormal fibrin polymerization and thrombophilia. (PubMed id 8473507) 3, 4, 6 Koopman J....Caen J.P. (1993) Contribution of haplotypes across the fibrinogen gene cluster to variation in risk of myocardial infarction. (PubMed id 15735812) 1, 3, 6 Mannila M.N....Silveira A. (2005) gammaAla82Gly represents a common fibrinogen gamma-chain variant in Caucasians. (PubMed id 15795540) 1, 3, 6 Ivaskevicius V....Oldenburg J. (2005) Functional polymorphisms of FGA, encoding alpha fibrinogen, are associated with susceptibility to venous thromboembolism in a Taiwanese population. (PubMed id 16362348) 3, 6 Ko Y.L....Lee Y.S. (2006) Phosphoproteomic analysis of the human pituitary. (PubMed id 16807684) 3, 4 Beranova-Giorgianni S.... Giorgianni F. (2006) Human plasma N-glycoproteome analysis by immunoaffinity subtraction, hydrazide chemistry, and mass spectrometry. (PubMed id 16335952) 3, 4 Liu T.... Smith R.D. (2005) A role of TNF-alpha gene variant on juvenile ischemic stroke: a case-control study. (PubMed id 16324093) 3, 6 Rubattu S....Rasura M. (2005) Genetic variation in the fibrinogen gamma gene increases the risk for deep venous thrombosis by reducing plasma fibrinogen gamma' levels. (PubMed id 16144795) 3, 6 Uitte de Willige S....Bertina R.M. (2005) Polymorphisms in prothrombotic genes and their impact on ischemic stroke in a Sardinian population. (PubMed id 15968394) 3, 6 Rubattu S....Volpe M. (2005)
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Genome Databases showing FGA
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing FGA
(According to HUGE )
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--
Specialized Databases showing FGA (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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Name Description
GeneReviews http://www.genetests.org/query?gene=FGA SHMPD http://shmpd.bii.a-star.edu.sg/gene.php?genestart=A&genename=FGA Wikipedia http://en.wikipedia.org/wiki/Fibrinogen SeattleSNPs http://pga.gs.washington.edu/data/fga/
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-- Services for FGA (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for FGA:
Search Tocris compounds for FGA
Antibodies for FGA
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Aliases for FGA
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GeneCards Homepage - Last full update: 1 Jul 2009
Incremental update: 13 Oct 2009