FFAR2 Gene
protein-coding GIFtS: 52
GCID: GC19P035940
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free fatty acid receptor 2(Previous name: G protein-coupled receptor 43 )
(Previous symbol: GPR43)
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Aliases
for FFAR2 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Free Fatty Acid Receptor 21 2 | | GPR431 2 3 5 | | FFA2R1 2 | | G Protein-Coupled Receptor 431 2 | | G-Protein Coupled Receptor 432 3 | | Free Fatty Acid Activated Receptor 22 |
Export aliases for FFAR2 gene to outside databasesPrevious GC identifers: GC19P040633 GC19P032447 |
Summaries
for FFAR2 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
Entrez Gene summary for FFAR2:
This gene encodes a member of the GP40 family of G protein-coupled receptors that are clustered together on chromosome19. The encoded protein is a receptor for short chain free fatty acids and may be involved in the inflammatoryresponse and in regulating lipid plasma levels. (provided by RefSeq, Apr 2009)
UniProtKB/Swiss-Prot: FFAR2_HUMAN, O15552Function: Receptor for short chain fatty acids through a G(i)-protein-mediated inhibition of adenylyl cyclase andelevation of intracellular calcium. The rank order of potency for agonists of this receptor is acetate= propionate =butyrate > pentanoate = formate
Gene Wiki entry for FFAR2 (Free fatty acid receptor 2)
|
Genomic Views
for FFAR2 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000019.9 NC_018930.1 NT_011109.16
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the FFAR2 gene promoter:
Max1 NF-1 NF-1/L Pax-2 Pax-2a CUTL1 HNF-1A Pax-2b HNF-1
Other transcription factors
Search SABiosciences Chromatin IP Primers for FFAR2
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat FFAR2 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 19q13.1 Ensembl cytogenetic band: 19q13.12 HGNC cytogenetic band: 19q13.1FFAR2 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 19 GeneLoc Exon Structure GeneLoc location for GC19P035940: view genomic region
(about GC identifiers)
Start:
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35,940,617 bp from pter |
End:
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35,942,669 bp from pter |
Size:
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2,053 bases |
Orientation:
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plus strand |
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Proteins
for FFAR2 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: FFAR2_HUMAN, O15552 (See
protein sequence)Recommended Name: Free fatty acid receptor 2 Size: 330 amino acids; 37144 Da
Subcellular location: Cell membrane; Multi-pass membrane protein
Secondary accessions: B0M0J9 Q4VAZ3 Q4VAZ5 Q4VBL5Explore the universe of human proteins at neXtProt for FFAR2: NX_O15552
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_O15552
FFAR2 Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins: NP_005297.1
ENSEMBL proteins: ENSP00000246549 Reactome Protein details: O15552
Human Recombinant Protein Products:
Gene Ontology (GO): 3 cellular component terms (GO ID links to tree view): About this table
FFAR2 for ontologies About GeneDecksing
FFAR2 Antibody Products:
Assay Products for FFAR2: |
Protein
Domains /
Families
for FFAR2 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
FFAR2 for domains About GeneDecksing
3 InterPro domains/families:Graphical View of Domain Structure for InterPro Entry O15552ProtoNet protein and cluster: O15552 UniProtKB/Swiss-Prot: FFAR2_HUMAN, O15552Similarity: Belongs to the G-protein coupled receptor 1 family |
Function
for FFAR2 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Function Summary:
UniProtKB/Swiss-Prot: FFAR2_HUMAN, O15552Function: Receptor for short chain fatty acids through a G(i)-protein-mediated inhibition of adenylyl cyclase andelevation of intracellular calcium. The rank order of potency for agonists of this receptor is acetate= propionate =butyrate > pentanoate = formate
Clone
Products: |  | EMD Millipore Clones for the Expression of FFAR2 | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for FFAR2 (see all 7)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for FFAR2
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
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Synthesis Service for FFAR2 | |  | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat FFAR2 |
In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for FFAR2 |
Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0004930 | G-protein coupled receptor activity |
IEA | -- | | GO:0008289 | lipid binding |
IEA | -- |
FFAR2 for ontologies About GeneDecksing
Animal Models:
Mouse knock-outs for FFAR2: Ffar2tm1Gzt Ffar2tm1Lex
10 MGI mutant phenotypes (inferred from 5 alleles ) (MGI details for Ffar2):
FFAR2 for phenotypes About GeneDecksing
|
Pathways & Interactions
for FFAR2 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Unified GeneCards pathways About this table
See pathways by source
| Super-pathway | contained gene-specific pathways |
|---|
| 1 | Class A/1 (Rhodopsin-like receptors) | | | 2 | Signaling by GPCR | | | 3 | G alpha (q) signalling events | | | 4 | Free fatty acid receptors | |
Pathway sources
See GeneCards unified pathways
Show all pathways
1  BioSystems Pathway for FFAR2
5/8 
Reactome Pathways for FFAR2 (see all 8)
FFAR2 for pathways About GeneDecksing
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for FFAR2
STRING Interaction
Network Preview (showing 5 interactants - click image to see 25)
5/127 Interacting proteins for FFAR2 (O155523 ENSP000002465494) via UniProtKB, MINT, STRING, and/or I2D (see all 127)About this table
Gene Ontology (GO): 1 biological process term (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
TAS | 9344866 |
FFAR2 for ontologies About GeneDecksing
|
Drugs & Compounds
for FFAR2 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
FFAR2 for compounds About GeneDecksing
 Browse Tocris compounds for FFAR2
1 HMDB Compound for FFAR2 About this table
5 Novoseek chemical compound relationships for FFAR2 gene About this table
Search CenterWatch for drugs/clinical trials and news about FFAR2
|
Transcripts
for FFAR2 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for FFAR2 gene: NM_005306.2 Unigene Cluster for FFAR2: Free fatty acid receptor 2 Hs.248056 [show with all ESTs]Unigene Representative Sequence: NM_0053061 Ensembl transcript including schematic representation, and UCSC links where relevant: ENST00000246549(uc010eea.3)
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for FFAR2 (see all 7)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for FFAR2
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript: all cDNA clones in your preferred vector: FFAR2 (NM_005306) | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for FFAR2 | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat FFAR2 |
Additional cDNA sequence: AB378083.1 BC095535.1 BC096198.3 BC096199.3 BC096200.1 BC096201.1 2 DOTS entries: DT.91747647 DT.121480603 20 AceView cDNA sequences: CN843465 CK819813 CN833525 NM_005306 BM141985 CN841942 CN841363 AW015185 CN835438 CA309917 CN841411 BF106231 CN842006 BM141718 CN839425 CN843466 AX810701 CK819814 CN833548 BM791838
GeneLoc Exon Structure
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Expression
for FFAR2 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| FFAR2 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: CTCTCCCAGC
About this image
See FFAR2 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for FFAR2
SOURCE GeneReport for Unigene cluster: Hs.248056
UniProtKB/Swiss-Prot: FFAR2_HUMAN, O15552Tissue specificity: Expressed at relatively high levels in peripheral blood leukocytes and, to lesser, extent, inspleen
SABiosciences Expression via Pathway-Focused PCR Array including FFAR2:
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for FFAR2
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse, rat FFAR2 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat FFAR2 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat FFAR2 | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for FFAR2 |
Orthologs
for FFAR2 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of chordates.
Orthologs for FFAR2 gene from 3/10 species (see all 10) About this table
ENSEMBL Gene Tree for FFAR2 (if available)
TreeFam Gene Tree for FFAR2 (if available) |
Paralogs
for FFAR2 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for FFAR2 gene
- GPR42 FFAR32 GPR682 P2RY82 F2RL12 GPR652 F2RL22 GPR1322
- FFAR12 GPR422 F2RL32 F2R2
4 SIMAP similar genes for FFAR2 using alignment to 2 protein entries: FFAR2_HUMAN (see all proteins):GPR42 FFAR3 P2RY8 FFAR1
FFAR2 for paralogs About GeneDecksing
|
Genomic Variants
for FFAR2 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 19 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for FFAR2 (35940617 - 35942669 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for FFAR2: -- | SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing FFAR2 |
|
Disorders
/ Diseases
for FFAR2 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
FFAR2 for disorders About GeneDecksing
OMIM gene information: 603823
OMIM disorders: --
2  diseases for FFAR2: About MalaCardscolon cancer breast cancer
Export disorders for FFAR2 gene to outside databases
|
Publications
for FFAR2 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for FFAR2 gene, integrated from 9 sources (see all 33):
(articles sorted by number of sources associating them with FFAR2) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- A cluster of four novel human G protein-coupled receptor genes occurring in close proximity to CD22 gene on chromosome 19q13.1. (PubMed id 9344866)1, 2, 3 Sawzdargo M....O'Dowd B.F. (1997)
- The orphan G protein-coupled receptors GPR41 and GPR43 are activated by propionate and other short chain carboxylic acids. (PubMed id 12496283)1, 2, 9 Brown A.J.... Dowell S.J. (2003)
- Identification of a free fatty acid receptor, FFA2R, expressed on leukocytes and activated by short-chain fatty acids. (PubMed id 12684041)1, 2, 9 Nilsson N.E.... Olde B. (2003)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
- The DNA sequence and biology of human chromosome 19. (PubMed id 15057824)1, 2 Grimwood J.... Lucas S.M. (2004)
- Expression of the short-chain fatty acid receptor, GPR43, in the human colon. (PubMed id 17899402)1, 9 Karaki S....Kuwahara A. (2008)
- Roles of short-chain fatty acids receptors, GPR41 and GPR43 on colonic functions. (PubMed id 18812643)1, 9 Tazoe H....Kuwahara A. (2008)
- Functional characterization of human receptors for short chain fatty acids and their role in polymorphonuclear cell activation. (PubMed id 12711604)1, 9 Le Poul E....Detheux M. (2003)
- Extracellular ionic locks determine variation in const itutive activity and ligand potency between species orthologs of the free fatty acid receptors FFA2 and FFA3. (PubMed id 23066016)1 Hudson B.D....Milligan G. (2012)
- G-protein-coupled receptor for short-chain fatty acid s suppresses colon cancer. (PubMed id 20979106)1 Tang Y....Nie D. (2011)
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External Searches for FFAR2 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
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Genome Databases showing FFAR2 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing FFAR2 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing FFAR2 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for FFAR2 | Pharmacogenomics, SNPs, Pathways |
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| | |
About This Section
| Patent Information for FFAR2 gene:
Search GeneIP for patents involving FFAR2
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for FFAR2 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
 | |
 | |
 |
| | |  | Browse OriGene Antibodies | | OriGene shRNA RFP for FFAR2 | | | OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for FFAR2 | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for FFAR2 | | | OriGene Protein Over-expression Lysate for FFAR2 | | Browse OriGene Fluorogenic Cell Assay Kits | | | OriGene siRNA for FFAR2 | | Browse 3'-UTR reporter clones for miRNA target validation | | | OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for FFAR2 | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for FFAR2 | | | Browse OriGene GFP tagged cDNA clones in CMV expression vector | | Browse OriGene MicroRNA Expression Plasmids | | | Browse OriGene basic RS shRNAs | | Browse OriGene validated miRNA SYBR primer pairs | | | Browse OriGene full length recombinant human proteins expressed in human HEK293 cells | | OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling | | | OriGene Custom Antibody Services for FFAR2 | | OriGene Custom Protein Services for FFAR2 | | | OriGene Custom Immunoassay Development | | |
| |
 |
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| | | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat FFAR2 | | | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing FFAR2 | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat FFAR2 | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat FFAR2 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat FFAR2 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat FFAR2 |
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 |  |  |  | |
| | | | Search Tocris compounds for FFAR2 |
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 | | | FFAR2 Proteins, Antibodies, CLIAs, and ELISAs |
| | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for FFAR2 |
|  |  |  | | | | ThermoFisher Antibodies for FFAR2 |
| | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat FFAR2 |
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