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FEZF1-AS1 Gene(RNA Gene)

FEZF1 Antisense RNA 1

GCID:
GC07P122303
GIFtS:
20
Genes Participants
UDN Logo

Aliases for FEZF1-AS1 Gene

Subcategory (RNA class) for FEZF1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FEZF1-AS1 Gene

  • FEZF1 Antisense RNA 1 2 3 5
  • FEZF1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for FEZF1-AS1 Gene

Previous GeneCards Identifiers for FEZF1-AS1 Gene

  • GC07P121946

Summaries for FEZF1-AS1 Gene

GeneCards Summary for FEZF1-AS1 Gene

FEZF1-AS1 (FEZF1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FEZF1-AS1 Gene

Genomics for FEZF1-AS1 Gene

Products:

  1. Regulatory Element

Regulatory Elements for FEZF1-AS1 Gene

Enhancers for FEZF1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07G122142 1.6 FANTOM5 ENCODE dbSUPER 5.3 -159.6 -159561 2.3 PKNOX1 FOXA2 ATF1 ARID4B FEZF1 ZNF2 ZNF48 YY1 GLIS2 GATA2 AASS FEZF1-AS1 PTPRZ1 RNU7-154P
GH07G122147 0.8 ENCODE dbSUPER 6.6 -154.8 -154781 2.6 HDAC2 ZSCAN4 POU5F1 CHD7 ETS1 FEZF1-AS1 AASS LOC100130618
GH07G122148 0.8 ENCODE dbSUPER 6.5 -156.3 -156327 0.1 CTCF TEAD4 ELF4 ZBTB40 FEZF1-AS1 AASS LOC100130618
GH07G122136 0.9 Ensembl ENCODE 5.3 -166.3 -166258 1.6 IRF2 ZSCAN4 ZNF398 ZNF366 POLR2A ZSCAN5C SCRT2 IRF1 PRDM1 ZBTB20 FEZF1-AS1 AASS RNU7-154P
GH07G122145 0.7 ENCODE dbSUPER 6.8 -157.4 -157419 1.5 SCRT2 POU5F1 CHD1 FEZF1-AS1 AASS LOC100130618
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FEZF1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for FEZF1-AS1 Gene

Chromosome:
7
Start:
122,303,658 bp from pter
End:
122,310,077 bp from pter
Size:
6,420 bases
Orientation:
Plus strand

Genomic View for FEZF1-AS1 Gene

Genes around FEZF1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FEZF1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FEZF1-AS1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for FEZF1-AS1 Gene

Proteins for FEZF1-AS1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for FEZF1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FEZF1-AS1 Gene

Domains & Families for FEZF1-AS1 Gene

Gene Families for FEZF1-AS1 Gene

HGNC:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with FEZF1-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FEZF1-AS1 Gene

Function for FEZF1-AS1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FEZF1-AS1 Gene

Localization for FEZF1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FEZF1-AS1 Gene

Pathways & Interactions for FEZF1-AS1 Gene

SuperPathways for FEZF1-AS1 Gene

PathCards logo More details on SuperPathways for FEZF1-AS1
No Data Available

Interacting Proteins for FEZF1-AS1 Gene

Gene Ontology (GO) - Biological Process for FEZF1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FEZF1-AS1 Gene

Drugs & Compounds for FEZF1-AS1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for FEZF1-AS1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for FEZF1-AS1 Gene

(2) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FEZF1-AS1 Gene

FEZF1 antisense RNA 1:
Representative Sequences:

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for FEZF1-AS1 Gene

No ASD Table

Relevant External Links for FEZF1-AS1 Gene

GeneLoc Exon Structure for
FEZF1-AS1
ECgene alternative splicing isoforms for
FEZF1-AS1

Expression for FEZF1-AS1 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FEZF1-AS1 Gene

mRNA expression in normal human tissues for FEZF1-AS1 Gene
mRNA expression by GTEx for FEZF1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for FEZF1-AS1 Gene

This gene is overexpressed in Brain - Hypothalamus (x14.3), Brain - Caudate (basal ganglia) (x8.5), Brain - Amygdala (x7.8), Brain - Putamen (basal ganglia) (x6.3), and Brain - Nucleus accumbens (basal ganglia) (x5.2).

SOURCE GeneReport for Unigene cluster for FEZF1-AS1 Gene:

Hs.664204
genes like me logo Genes that share expression patterns with FEZF1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FEZF1-AS1 Gene

Orthologs for FEZF1-AS1 Gene

Evolution for FEZF1-AS1 Gene

ENSEMBL:
Gene Tree for FEZF1-AS1 (if available)
TreeFam:
Gene Tree for FEZF1-AS1 (if available)

No data available for Orthologs for FEZF1-AS1 Gene

Paralogs for FEZF1-AS1 Gene

No data available for Paralogs for FEZF1-AS1 Gene

Variants for FEZF1-AS1 Gene

Sequence variations from dbSNP and Humsavar for FEZF1-AS1 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs587777739 Pathogenic 122,303,281(+) CATGT(A/G)ACGGG upstream-variant-2KB, reference, missense
rs587777740 Pathogenic 122,303,785(+) CTTTG(-/A)AAGCT nc-transcript-variant, reference, frameshift-variant
rs1000106128 -- 122,304,145(+) GACTG(C/G)CCTTC nc-transcript-variant, reference, missense
rs1000193580 -- 122,307,152(+) TTCCC(A/C)TGCTC intron-variant
rs1001070986 -- 122,301,864(+) GCAGA(A/G)GCTTC upstream-variant-2KB, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for FEZF1-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3891198 CNV gain 25118596
nsv5931 CNV deletion 18451855

Relevant External Links for FEZF1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FEZF1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FEZF1-AS1 Gene

Disorders for FEZF1-AS1 Gene

Relevant External Links for FEZF1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FEZF1-AS1

No disorders were found for FEZF1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FEZF1-AS1 Gene

Publications for FEZF1-AS1 Gene

  1. LincRNAFEZF1-AS1 represses p21 expression to promote gastric cancer proliferation through LSD1-Mediated H3K4me2 demethylation. (PMID: 28209170) Liu Y.W. … Ji G. (Mol. Cancer 2017) 2 3 64
  2. Long non-coding RNA FEZF1-AS1 facilitates cell proliferation and migration in colorectal carcinoma. (PMID: 26848625) Chen N. … Zhou J. (Oncotarget 2016) 2 3 64
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for FEZF1-AS1 Gene

Sources for FEZF1-AS1 Gene

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