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Aliases for FER1L6-AS2 Gene

Subcategory (RNA class) for FER1L6-AS2 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for FER1L6-AS2 Gene

  • FER1L6 Antisense RNA 2 2 3 4 5
  • FER1L6 Antisense RNA 2 (Non-Protein Coding) 2 3
  • C8orf78 3 4
  • Chromosome 8 Open Reading Frame 78 2
  • FER1L6 Antisense Gene Protein 2 4

External Ids for FER1L6-AS2 Gene

Previous HGNC Symbols for FER1L6-AS2 Gene

  • C8orf78

Previous GeneCards Identifiers for FER1L6-AS2 Gene

  • GC08M125061

Summaries for FER1L6-AS2 Gene

GeneCards Summary for FER1L6-AS2 Gene

FER1L6-AS2 (FER1L6 Antisense RNA 2) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for FER1L6-AS2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FER1L6-AS2 Gene

Genomics for FER1L6-AS2 Gene

Regulatory Elements for FER1L6-AS2 Gene

Enhancers for FER1L6-AS2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08H124194 1.9 FANTOM5 Ensembl ENCODE dbSUPER 12.9 -26.8 -26828 8 HDGF PKNOX1 ARNT SIN3A FEZF1 YBX1 ZNF2 ZBTB7B ZNF766 ZNF207 TRMT12 WASHC5 NSMCE2 TMEM65 FAM91A1 RNF139-AS1 WASHC5-AS1 ZNF572 ENSG00000253106 RNF139
GH08H124270 1.3 Ensembl ENCODE 10.7 -100.0 -100012 3 PKNOX1 FOXA2 ATF1 SIN3A FEZF1 ZNF766 GLIS2 ELK1 ATF7 FOS ENSG00000253227 FER1L6-AS2 RNU6-756P
GH08H124246 1.1 Ensembl ENCODE 10.7 -76.0 -75977 1 HDGF PKNOX1 ATF1 SIN3A KLF17 RAD21 SCRT2 FOS ATF7 RUNX3 FER1L6-AS2 LOC101927588 GC08P124263
GH08H124140 0.9 Ensembl ENCODE 12.8 +30.2 30230 1 TBP SMAD5 GTF2E2 BATF ZNF121 POLR2A FOS RUNX3 SPI1 TMEM65 FER1L6-AS2 ENSG00000254249 FER1L6-AS1 LOC392268 GC08M124076
GH08H124139 0.8 ENCODE 12 +33.2 33188 0 PKNOX1 ESRRA NFIB ZBTB7B MTA3 CTBP1 GATA3 RCOR1 SMARCA5 SMARCE1 FER1L6-AS2 FER1L6-AS1 ENSG00000254249 LOC392268 GC08M124076
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FER1L6-AS2 on UCSC Golden Path with GeneCards custom track

Genomic Location for FER1L6-AS2 Gene

Chromosome:
8
Start:
124,046,071 bp from pter
End:
124,171,522 bp from pter
Size:
125,452 bases
Orientation:
Minus strand

Genomic View for FER1L6-AS2 Gene

Genes around FER1L6-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FER1L6-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FER1L6-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FER1L6-AS2 Gene

Proteins for FER1L6-AS2 Gene

  • Protein details for FER1L6-AS2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96M78-FEAS2_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by FER1L6-AS2
    Protein Accession:
    Q96M78

    Protein attributes for FER1L6-AS2 Gene

    Size:
    137 amino acids
    Molecular mass:
    15528 Da
    Quaternary structure:
    No Data Available

neXtProt entry for FER1L6-AS2 Gene

Post-translational modifications for FER1L6-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FER1L6-AS2 Gene

Domains & Families for FER1L6-AS2 Gene

Protein Domains for FER1L6-AS2 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with FER1L6-AS2: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FER1L6-AS2 Gene

Function for FER1L6-AS2 Gene

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for FER1L6-AS2
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FER1L6-AS2 Gene

Localization for FER1L6-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FER1L6-AS2 Gene

Pathways & Interactions for FER1L6-AS2 Gene

SuperPathways for FER1L6-AS2 Gene

No Data Available

Interacting Proteins for FER1L6-AS2 Gene

Gene Ontology (GO) - Biological Process for FER1L6-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FER1L6-AS2 Gene

Drugs & Compounds for FER1L6-AS2 Gene

No Compound Related Data Available

Transcripts for FER1L6-AS2 Gene

mRNA/cDNA for FER1L6-AS2 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(13) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FER1L6-AS2 Gene

FER1L6 antisense RNA 2:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for FER1L6-AS2
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for FER1L6-AS2 Gene

No ASD Table

Relevant External Links for FER1L6-AS2 Gene

GeneLoc Exon Structure for
FER1L6-AS2
ECgene alternative splicing isoforms for
FER1L6-AS2

Expression for FER1L6-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FER1L6-AS2 Gene

mRNA differential expression in normal tissues according to GTEx for FER1L6-AS2 Gene

This gene is overexpressed in Testis (x18.0), Brain - Amygdala (x6.7), and Brain - Caudate (basal ganglia) (x5.8).

SOURCE GeneReport for Unigene cluster for FER1L6-AS2 Gene:

Hs.662360
genes like me logo Genes that share expression patterns with FER1L6-AS2: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FER1L6-AS2 Gene

Orthologs for FER1L6-AS2 Gene

Evolution for FER1L6-AS2 Gene

ENSEMBL:
Gene Tree for FER1L6-AS2 (if available)
TreeFam:
Gene Tree for FER1L6-AS2 (if available)

No data available for Orthologs for FER1L6-AS2 Gene

Paralogs for FER1L6-AS2 Gene

No data available for Paralogs for FER1L6-AS2 Gene

Variants for FER1L6-AS2 Gene

Sequence variations from dbSNP and Humsavar for FER1L6-AS2 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs1000014015 -- 124,055,176(+) GTTCA(A/C/T)GCCTG intron-variant
rs1000039953 -- 124,172,802(+) GTAAT(A/C)CCAGC upstream-variant-2KB
rs1000065553 -- 124,062,335(+) TTGGA(C/T)CTCAG intron-variant
rs1000071451 -- 124,106,601(+) GCCTT(A/T)GCCCC intron-variant
rs1000097096 -- 124,154,839(+) CATTT(C/G)CATAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FER1L6-AS2 Gene

Variant ID Type Subtype PubMed ID
esv1001834 CNV insertion 20482838
esv1609725 CNV insertion 17803354
esv23245 CNV loss 19812545
esv2673519 CNV deletion 23128226
esv2762769 CNV gain 21179565
esv3306706 CNV mobile element insertion 20981092
esv3309379 CNV mobile element insertion 20981092
esv3310430 CNV novel sequence insertion 20981092
esv3344858 CNV insertion 20981092
esv3359343 CNV insertion 20981092
esv3401229 CNV insertion 20981092
esv3618679 CNV loss 21293372
esv3618680 CNV loss 21293372
esv3618682 CNV loss 21293372
esv3618683 CNV loss 21293372
esv3618684 CNV loss 21293372
nsv1023183 CNV loss 25217958
nsv1124375 CNV deletion 24896259
nsv396418 CNV insertion 16902084
nsv397298 CNV insertion 16902084
nsv510985 OTHER complex 20534489
nsv612144 CNV loss 21841781
nsv6375 CNV deletion 18451855
nsv831452 CNV gain 17160897

Relevant External Links for FER1L6-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FER1L6-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FER1L6-AS2 Gene

Disorders for FER1L6-AS2 Gene

Relevant External Links for FER1L6-AS2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FER1L6-AS2

No disorders were found for FER1L6-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FER1L6-AS2 Gene

Publications for FER1L6-AS2 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 60
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 60
  3. DNA sequence and analysis of human chromosome 8. (PMID: 16421571) Nusbaum C … Lander ES (Nature 2006) 4 60
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for FER1L6-AS2 Gene

Sources for FER1L6-AS2 Gene

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