Free for academic non-profit institutions. Other users need a Commercial license

Aliases for FEM1C Gene

Aliases for FEM1C Gene

  • Fem-1 Homolog C (C. Elegans) 2 3
  • FEM1-Gamma 3 4
  • Protein Fem-1 Homolog C 3
  • EUROIMAGE686608 3
  • EUROIMAGE783647 3
  • KIAA1785 4
  • FEM1A 3
  • FEM1c 4

External Ids for FEM1C Gene

Previous GeneCards Identifiers for FEM1C Gene

  • GC05M114624
  • GC05M115264
  • GC05M114887
  • GC05M114932
  • GC05M114884
  • GC05M110038

Summaries for FEM1C Gene

GeneCards Summary for FEM1C Gene

FEM1C (Fem-1 Homolog C (C. Elegans)) is a Protein Coding gene. An important paralog of this gene is TANC1.

UniProtKB/Swiss-Prot for FEM1C Gene

  • Probable component of an E3 ubiquitin-protein ligase complex, in which it may act as a substrate recognition subunit.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FEM1C Gene

Genomics for FEM1C Gene

Regulatory Elements for FEM1C Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for FEM1C Gene

Start:
115,520,908 bp from pter
End:
115,544,894 bp from pter
Size:
23,987 bases
Orientation:
Minus strand

Genomic View for FEM1C Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FEM1C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FEM1C Gene

Proteins for FEM1C Gene

  • Protein details for FEM1C Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96JP0-FEM1C_HUMAN
    Recommended name:
    Protein fem-1 homolog C
    Protein Accession:
    Q96JP0
    Secondary Accessions:
    • B2RE47
    • Q8N3V8
    • Q9H704
    • Q9NPL6
    • Q9NPL9

    Protein attributes for FEM1C Gene

    Size:
    617 amino acids
    Molecular mass:
    68673 Da
    Quaternary structure:
    • Component of some E3 ubiquitin-protein ligase complex.
    SequenceCaution:
    • Sequence=BAB15096.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for FEM1C Gene

Proteomics data for FEM1C Gene at MOPED

Post-translational modifications for FEM1C Gene

  • Ubiquitination at Lys267
  • Modification sites at PhosphoSitePlus

Other Protein References for FEM1C Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for FEM1C Gene

Domains for FEM1C Gene

Gene Families for FEM1C Gene

HGNC:
  • ANKRD :Ankyrin repeat domain containing

Protein Domains for FEM1C Gene

Suggested Antigen Peptide Sequences for FEM1C Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q96JP0

UniProtKB/Swiss-Prot:

FEM1C_HUMAN :
  • Q96JP0
Family:
  • Belongs to the fem-1 family.
Similarity:
  • Contains 9 ANK repeats.
  • Contains 2 TPR repeats.
genes like me logo Genes that share domains with FEM1C: view

Function for FEM1C Gene

Molecular function for FEM1C Gene

UniProtKB/Swiss-Prot Function: Probable component of an E3 ubiquitin-protein ligase complex, in which it may act as a substrate recognition subunit.

Gene Ontology (GO) - Molecular Function for FEM1C Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with FEM1C: view

Phenotypes for FEM1C Gene

MGI mutant phenotypes for FEM1C:
inferred from 1 alleles
GenomeRNAi human phenotypes for FEM1C:
genes like me logo Genes that share phenotypes with FEM1C: view

Animal Model Products

CRISPR Products

miRNA for FEM1C Gene

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for FEM1C

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for FEM1C Gene

Localization for FEM1C Gene

Subcellular locations from UniProtKB/Swiss-Prot for FEM1C Gene

Cytoplasm.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for FEM1C Gene COMPARTMENTS Subcellular localization image for FEM1C gene
Compartment Confidence
cytosol 3
nucleus 2
endoplasmic reticulum 1

Gene Ontology (GO) - Cellular Components for FEM1C Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IEA --
genes like me logo Genes that share ontologies with FEM1C: view

Pathways for FEM1C Gene

SuperPathways for FEM1C Gene

No Data Available

UniProtKB/Swiss-Prot Q96JP0-FEM1C_HUMAN

  • Pathway: Protein modification; protein ubiquitination

Gene Ontology (GO) - Biological Process for FEM1C Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016567 protein ubiquitination IEA --
genes like me logo Genes that share ontologies with FEM1C: view

No data available for Pathways by source for FEM1C Gene

Transcripts for FEM1C Gene

mRNA/cDNA for FEM1C Gene

Unigene Clusters for FEM1C Gene

Fem-1 homolog c (C. elegans):
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for FEM1C

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for FEM1C

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for FEM1C Gene

ExUns: 1a · 1b ^ 2 ^ 3a · 3b · 3c ^ 4
SP1: -
SP2: -
SP3:

Relevant External Links for FEM1C Gene

GeneLoc Exon Structure for
FEM1C
ECgene alternative splicing isoforms for
FEM1C

Expression for FEM1C Gene

mRNA expression in normal human tissues for FEM1C Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for FEM1C Gene

SOURCE GeneReport for Unigene cluster for FEM1C Gene Hs.47367

mRNA Expression by UniProt/SwissProt for FEM1C Gene

Q96JP0-FEM1C_HUMAN
Tissue specificity: Widely expressed. Highly expressed in kidney, cardiac tissue, skeletal muscle and testis. Expressed at lower levels in other tissues, including cartilage.
genes like me logo Genes that share expressions with FEM1C: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA differential expression in normal tissues for FEM1C Gene

Orthologs for FEM1C Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for FEM1C Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia FEM1C 35
  • 99.78 (n)
  • 100 (a)
FEM1C 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia FEM1C 36
  • 100 (a)
OneToOne
LOC541180 35
  • 95.25 (n)
  • 99.84 (a)
dog
(Canis familiaris)
Mammalia FEM1C 35
  • 93.63 (n)
  • 99.68 (a)
FEM1C 36
  • 96 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Fem1c 35
  • 92.38 (n)
  • 99.51 (a)
Fem1c 16
Fem1c 36
  • 100 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia FEM1C 36
  • 95 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia FEM1C 36
  • 86 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Fem1c 35
  • 93.08 (n)
  • 99.68 (a)
chicken
(Gallus gallus)
Aves FEM1C 35
  • 82.39 (n)
  • 90.6 (a)
FEM1C 36
  • 91 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia FEM1C 36
  • 94 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia fem1c 35
  • 76.77 (n)
  • 89.63 (a)
Str.15002 35
zebrafish
(Danio rerio)
Actinopterygii fem1c 35
  • 66.5 (n)
  • 79.35 (a)
fem1c 36
  • 78 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP003839 35
  • 53.31 (n)
  • 55.65 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG6966 35
  • 54.04 (n)
  • 55.52 (a)
CG6966 36
  • 50 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea fem-1 35
  • 49.97 (n)
  • 40.37 (a)
fem-1 36
  • 33 (a)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes YAR1 38
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 46 (a)
OneToMany
Species with no ortholog for FEM1C:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for FEM1C Gene

ENSEMBL:
Gene Tree for FEM1C (if available)
TreeFam:
Gene Tree for FEM1C (if available)

Paralogs for FEM1C Gene

Selected SIMAP similar genes for FEM1C Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with FEM1C: view

Variants for FEM1C Gene

Sequence variations from dbSNP and Humsavar for FEM1C Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type MAF
rs3727 -- 115,521,013(+) TCTTT(C/T)GAAAA utr-variant-3-prime
rs166281 -- 115,529,745(-) TTAGA(A/C)CACGT intron-variant
rs256938 -- 115,532,640(+) TATAT(A/C)TATAA intron-variant
rs256939 -- 115,532,541(-) TTTTT(C/T)CCCTC intron-variant
rs256940 -- 115,530,494(+) aggat(A/G)aagat intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FEM1C Gene

Variant ID Type Subtype PubMed ID
nsv830455 CNV Gain 17160897
esv269779 CNV Insertion 20981092

Relevant External Links for FEM1C Gene

HapMap Linkage Disequilibrium report
FEM1C

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FEM1C Gene

Disorders for FEM1C Gene

Relevant External Links for FEM1C

Genetic Association Database (GAD)
FEM1C
Human Genome Epidemiology (HuGE) Navigator
FEM1C
genes like me logo Genes that share disorders with FEM1C: view

No data available for UniProtKB/Swiss-Prot for FEM1C Gene

Publications for FEM1C Gene

  1. Identification of human FEM1A, the ortholog of a C. elegans sex- differentiation gene. (PMID: 11733146) Krakow D. … Cohn D.H. (Gene 2001) 2 3 4 23
  2. The Fem1c genes: conserved members of the Fem1 gene family in vertebrates. (PMID: 14527725) Ventura-Holman T. … Maher J.F. (Gene 2003) 2 3 4 23
  3. FEM1A and FEM1B: novel candidate genes for polycystic ovary syndrome. (PMID: 18757445) Goodarzi M.O. … Azziz R. (Hum. Reprod. 2008) 3 23 48
  4. Prediction of the coding sequences of unidentified human genes. XX. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PMID: 11347906) Nagase T. … Ohara O. (DNA Res. 2001) 3 4
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for FEM1C Gene

Sources for FEM1C Gene

Back to Top

Content