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Aliases & Descriptions for FDPS
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases FPPS 2 FPS 2 , 3 , 5 KIAA1293 3 OTTHUMP00000015807 2 OTTHUMP00000015808 2 dimethylallyltranstransferase 2 geranyltranstransferase 2
Descriptions FPP synthetase 2 , 3 Farnesyl diphosphate synthetase 3 farnesyl diphosphate synthase 2 farnesyl diphosphate synthase (farnesyl pyrophosphate synthetase, dimethylallyltranstransferase, geranyltranstransferase) 2 farnesyl pyrophosphate synthetase 2
Search outside databases for aliases for FDPS genePrevious GC identifers: GC01P153136 GC01P151019 GC01P152056 GC01P152495 GC01P152091
Summaries for FDPS (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for FDPS : This gene encodes an enzyme that catalyzes the production of geranyl pyrophosphate and farnesylpyrophosphate from isopentenyl pyrophosphate and dimethylallyl pyrophosphate. The resultingproduct, farnesyl pyrophosphate, is a key intermediate in cholesterol and sterol biosynthesis, asubstrate for protein farnesylation and geranylgeranylation, and a ligand or agonist for certainhormone receptors and growth receptors. Drugs that inhibit this enzyme prevent thepost-translational modifications of small GTPases and have been used to treat diseases related tobone resorption. Multiple pseudogenes have been found on chromosomes 1, 7, 14, 15, 21 and X.Multiple transcript variants encoding different isoforms have been found for this gene. UniProtKB/Swiss-Prot: FPPS_HUMAN, P14324 Function : Key enzyme in isoprenoid biosynthesis which catalyzes the formation of farnesyldiphosphate (FPP), a precursor for several classes of essential metabolites including sterols,dolichols, carotenoids, and ubiquinones. FPP also serves as substrate for protein farnesylationand geranylgeranylation. Catalyzes the sequential condensation of isopentenyl pyrophosphate withthe allylic pyrophosphates, dimethylallyl pyrophosphate, and then with the resultantgeranylpyrophosphate to the ultimate product farnesyl pyrophosphate
Genomic Location for FDPS
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the FDPS gene Entrez Gene cytogenetic band: 1q22 Ensembl cytogenetic band: 1q22 HGNC cytogenetic band: 1q22 FDPS Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 1 GeneLoc Exon Structure
GeneLoc location for GC01P153545:
(about GC identifiers )
Start:
153,545,331 bp from pter
End:
153,557,080 bp from pter
Size:
11,750 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000001.9 NT_004487.18 Proteins for FDPS
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: FPPS_HUMAN, P14324 (See
protein sequence )Recommended Name: Farnesyl pyrophosphate synthetase Size : 419 amino acids; 48275 Da
Subunit : Homodimer. Interacts with RSAD2. Interacts with HTLV-1 protein p13(II)
Subcellular location : Cytoplasm
Caution : It is uncertain whether Met-1 or Met-67 is the initiator
PDB structures from and Proteopedia : 1YQ7 (3D)
 1YV5 (3D)
 1ZW5 (3D)
 2F7M (3D)
 2F89 (3D)
 2F8C (3D)
 2F8Z (3D)
 2F92 (3D)
 2F94 (3D)
 2F9K (3D)
 2OPM (3D)
 2OPN (3D)
 2QIS (3D)
 2RAH (3D)
 2VF6 (3D)
 3B7L (3D)
 3CP6 (3D)
 
Secondary accessions : Q96G29
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (3 alternative transcripts):
NP_001129293.1 NP_001129294.1 NP_001995.1 ENSEMBL proteins: ENSP00000357340 ENSP00000349078 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 1 Gene Ontology (GO) cellular component term (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0005737 cytoplasm
IEA --
About this table Antibodies for FDPS: Assays for FDPS:
Protein
Domains/ Families for FDPS(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P14324 ProtoNet protein and cluster: P14324
1 Blocks protein family : IPB000092 Polyprenyl synthetase UniProtKB/Swiss-Prot: FPPS_HUMAN, P14324 Similarity : Belongs to the FPP/GGPP synthetase family
Gene Function for FDPS
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_002004 Applied Biosystems Silencer ® siRNAs for FDPS Sigma-Aldrich siRNA and siRNA Panels for FDPS Sigma-Aldrich shRNA for FDPS Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_001135821                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_001135821                                  untagged cDNA clones in CMV expression vector (see all 4 ): AK022841  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001135821 UniProtKB/Swiss-Prot: FPPS_HUMAN, P14324 Function : Key enzyme in isoprenoid biosynthesis which catalyzes the formation of farnesyldiphosphate (FPP), a precursor for several classes of essential metabolites including sterols,dolichols, carotenoids, and ubiquinones. FPP also serves as substrate for protein farnesylationand geranylgeranylation. Catalyzes the sequential condensation of isopentenyl pyrophosphate withthe allylic pyrophosphates, dimethylallyl pyrophosphate, and then with the resultantgeranylpyrophosphate to the ultimate product farnesyl pyrophosphate Catalytic activity : Dimethylallyl diphosphate + isopentenyl diphosphate = diphosphate + geranyldiphosphate Catalytic activity : Geranyl diphosphate + isopentenyl diphosphate = diphosphate +trans,trans-farnesyl diphosphate Enzyme regulation : Inactivated by interferon-induced RSAD2. This inactivation may result ofdisruption of lipid rafts at the plasma membrane, and thus have an antiviral effect since manyenvelopped viruses need lipid rafts to bud efficiently out of the cell
3 Gene Ontology (GO) molecular function terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0004161 dimethylallyltranstransferase activity
IEA -- GO:0004337 geranyltranstransferase activity
IEA -- GO:0016740 transferase activity
IEA --
About this table
Pathways & Interactions for FDPS
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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1 Sigma-Aldrich "Your Favorite Gene" Pathway for FDPS (Your Favorite Gene powered by Ingenuity) UniProtKB/Swiss-Prot: FPPS_HUMAN, P14324 Pathway : Isoprenoid biosynthesis; farnesyl-PP biosynthesis; farnesyl-PP from geranyl-PP andisopentenyl-PP: step 1/1 Pathway : Isoprenoid biosynthesis; geranyl-PP biosynthesis; geranyl-PP from dimethylallyl-PP andisopentenyl-PP: step 1/1
5/16 Interacting proteins for FDPS (ENSP00000357340 3 P14324 2 ) via UniProtKB, MINT, and/or STRING (see all 16
)About this table 3 Gene Ontology (GO) biological process terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0006695 cholesterol biosynthetic process
TAS 2690933 GO:0008299 isoprenoid biosynthetic process
IEA -- GO:0044419 interspecies interaction between organisms
IEA --
About this table
Drugs & Compounds for FDPS (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Compounds for FDPS available from Tocris Bioscience Compound Action
CAS
number Risedronate Farnesyl diphosphate (FPP) synthase inhibitor [105462-24-6]
About this table 10 Novoseek chemical compound relationships for FDPS gene
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
farnesyl diphosphate
97.47
130
11785983 (5), 10620343 (5), 11160603 (5), 1429508 (3) (see all 72 )
isopentenyl diphosphate
86.86
8
11785983 (2), 11112517 (1), 10620343 (1), 8262934 (1) (see all 6 )
mevalonate
79.46
12
11785983 (2), 16179378 (2), 11577991 (1), 16932286 (1) (see all 9 )
squalene
72.39
4
11792726 (1), 8619637 (1), 11773414 (1), 9508001 (1)
sterol
69.15
7
9430668 (1), 15473864 (1), 8864955 (1), 10620343 (1) (see all 5 )
3-hydroxy-3-methylglutaryl-coa
53.10
2
12754279 (1), 15967538 (1)
cholesterol
49.34
19
11577991 (1), 8086404 (1), 9430668 (1), 10946023 (1) (see all 14 )
fatty acid
29.50
3
12754279 (1), 9508001 (1)
lipid
0.00
1
18175373 (1)
calcium
0.00
1
1346397 (1)
About this table
Transcripts for FDPS(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_002004 Sigma-Aldrich siRNA and siRNA Panels for FDPS Sigma-Aldrich shRNA for FDPS Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001135821 NM_001135822 NM_002004
REFSEQ mRNAs for FDPS gene (3 alternative transcripts): NM_001135821.1 NM_001135822.1 NM_002004.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001135821 NM_001135822 NM_002004
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_001135821                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_001135821                                  untagged cDNA clones in CMV expression vector (see all 4 ): AK022841  
Additional cDNA sequence: AK291084.1 BC010004.2 CR590457.1 CR596980.1 CR598280.1 CR599124.1 CR625993.1 D14697.1 J05262.1 M29863.1
24/60 DOTS entries (see all 60
): DT.100712134 DT.40235399 DT.85104788 DT.100639599 DT.95133952 DT.92468004 DT.100701015 DT.92467985 DT.92468021 DT.92467976 DT.100701014 DT.92468010 DT.100800090 DT.101985274 DT.95302259 DT.97862674 DT.121365043 DT.121365136 DT.100700983 DT.95144374 DT.121365069 DT.121365163 DT.100039672 DT.95146655
24/785 AceView cDNA sequences (see all 785
):CA428103 BQ055194 CB138402 BG697158 BE746682 BI092666 BQ642474 BQ053766 AL546559 BU845295 BG577339 AU076552 BU856435 BU844835 BQ643366 BQ058201 BE266727 BM449563 BQ062373 BU151518 AI304609 BG677725 BQ877451 BQ054349
highest scoring ESTs for FDPS :D14697 AA078786 AA493524 AA507460 AA527362 AA634724 AA809315 AA877772 AA903007 AI066793
Unigene Cluster for FDPS: Farnesyl diphosphate synthase (farnesyl pyrophosphate synthetase, dimethylallyltranstransferase, geranyltranstransferase) Hs.335918 [show with all ESTs ] Unigene Representative Sequence: BM542682 GeneLoc Exon Structure 5/23 Alternative Splicing Database (ASD) splice patterns (SP) for FDPS (see all 23
) ExUns: 1a · 1b · 1c · 1d · 1e · 1f · 1g · 1h ^ 2a · 2b · 2c ^ 3a · 3b · 3c ^ 4a · 4b ^ 5 ^ 6 ^ 7a · 7b · 7c ^ 8a · 8b · 8c · 8d ^ 9a · SP1 :                 -   -   -   -   -   -   -       -     -   -   -           SP2 :                 -   -   -   -   -   -         -     -   -   -           SP3 :                 -   -   -   -   -   -   -   -   -   -     -   -   -           SP4 :                 -   -   -   -             -     -   -   -           SP5 :                       -   -   -         -     -   -   -          
ExUns: 9b · 9c ^ 10a · 10b ^ 11 ^ 12a · 12b · 12c ^ 13a · 13b SP1 :       -               SP2 :       -               SP3 :       -               SP4 :       -               SP5 :       -              
About this scheme ECgene alternative splicing isoforms for FDPS 2 Ensembl transcripts including schematic representations : ENST00000368356
ENST00000356657
Expression for FDPS
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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FDPS expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for FDPS 1 / 2 / 3
3 probe-sets matching FDPS gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: GCAGGAATTGSOURCE GeneReport for Unigene cluster: Hs.335918 Expression variation in blood from EXPOLDB for FDPS
Orthologs for FDPS
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for FDPS gene from 5/22 species (see all 22
)
About this table Species with no ortholog for FDPS ENSEMBL Gene Tree for FDPS Paralogs for FDPS (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Pseudogenes 3 related pseudogenes
SNPs/Variants for FDPS (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for FDPS (up to first 250kb)
Disorders & Mutations for FDPS
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 134629 7 Novoseek disease relationships for FDPS gene
About this table Human Genome Epidemiology Navigator: FDPS (3 documents)
Medical News for FDPS (Possibly Related Articles in
Doctor's Guide )
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--
Publications for FDPS (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/90 PubMed articles for FDPS gene (see all 90
): Isolation and sequence of the human farnesyl pyrophosphate synthetase cDNA. Coordinate regulation of the mRNAs for farnesyl pyrophosphate synthetase, 3-hydroxy-3-methylglutaryl coenzyme A reductase, and 3- hydroxy-3-methylglutaryl coenzyme A synthase by phorbol ester. (PubMed id 1968462) 1, 2, 3, 4 Wilkin D.J.... Edwards P.A. (1990) Oncoviral bovine leukemia virus G4 and human T-cell leukemia virus type 1 p13(II) accessory proteins interact with farnesyl pyrophosphate synthetase. (PubMed id 11773414) 1, 3, 4 Lefebvre L.... Willems L. (2002) The molecular mechanism of nitrogen-containing bisphosphonates as antiosteoporosis drugs. (PubMed id 16684881) 3, 4 Kavanagh K.L.... Oppermann U. (2006) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 3, 4 Ota T....Sugano S. (2004) Prediction of the coding sequences of unidentified human genes. I. The coding sequences of 40 new genes (KIAA0001-KIAA0040) deduced by analysis of randomly sampled cDNA clones from human immature myeloid cell line KG-1. (PubMed id 7584026) 3, 4 Nomura N....Tabata S. (1994) Cloning, analysis, and bacterial expression of human farnesyl pyrophosphate synthetase and its regulation in Hep G2 cells. (PubMed id 2690933) 3, 4 Sheares B.T.... Karkas J.D. (1989) Mitochondrial targeting of farnesyl diphosphate synthase is a widespread phenomenon in eukaryotes. (PubMed id 17198737) 1, 3 Martin D....Belles X. (2007) Structure-activity relationships for inhibition of farnesyl diphosphate synthase in vitro and inhibition of bone resorption in vivo by nitrogen-containing bisphosphonates. (PubMed id 11160603) 1, 3 Dunford J.E....Rogers M.J. (2001) Identification of a bisphosphonate that inhibits isopentenyl diphosphate isomerase and farnesyl diphosphate synthase. (PubMed id 11785983) 1, 3 Thompson K....Rogers M.J. (2002) Alendronate is a specific, nanomolar inhibitor of farnesyl diphosphate synthase. (PubMed id 10620343) 1, 3 Bergstrom J.D....Rodan G. (2000)
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Genome Databases showing FDPS
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing FDPS
(According to HUGE )
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Specialized Databases showing FDPS (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for FDPS (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for FDPS:
Recombinant Proteins (FDPS ) Antibodies (FDPS )
Tocris compounds for FDPS
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GeneCards Homepage - Last full update: 1 Jul 2009
Incremental update: 13 Oct 2009