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Aliases for FCRL4 Gene

Aliases for FCRL4 Gene

  • Fc Receptor-Like 4 2 3
  • IRTA1 3 4 6
  • Immune Receptor Translocation-Associated Protein 1 3 4
  • Fc Receptor Homolog 4 3 4
  • IFGP Family Protein 2 3 4
  • FcR-Like Protein 4 3 4
  • HIFGP2 3 4
  • FCRH4 3 4
  • Immunoglobulin Superfamily Receptor Translocation Associated 1 3
  • Immunoglobulin Superfamily Fc Receptor, Gp42 3
  • Fc Receptor-Like Protein 4 3
  • CD307d Antigen 4
  • CD307d 3
  • IGFP2 3
  • FcRL4 4
  • IFGP2 4

External Ids for FCRL4 Gene

Previous GeneCards Identifiers for FCRL4 Gene

  • GC01M154357
  • GC01M155811
  • GC01M128901

Summaries for FCRL4 Gene

Entrez Gene Summary for FCRL4 Gene

  • This gene encodes a member of the immunoglobulin receptor superfamily and is one of several Fc receptor-like glycoproteins clustered on the long arm of chromosome 1. The encoded protein has four extracellular C2-type immunoglobulin domains, a transmembrane domain and a cytoplasmic domain that contains three immune-receptor tyrosine-based inhibitory motifs. This protein may play a role in the function of memory B-cells in the epithelia. Aberrations in the chromosomal region encoding this gene are associated with non-Hodgkin lymphoma and multiple myeloma. [provided by RefSeq, Apr 2009]

GeneCards Summary for FCRL4 Gene

FCRL4 (Fc Receptor-Like 4) is a Protein Coding gene. Diseases associated with FCRL4 include hodgkin lymphoma and multiple myeloma. An important paralog of this gene is FCRL2.

UniProtKB/Swiss-Prot for FCRL4 Gene

  • May function as an inhibitor of the B-cell receptor signaling. May function in the B-cell-mediated immune response.

Gene Wiki entry for FCRL4 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FCRL4 Gene

Genomics for FCRL4 Gene

Regulatory Elements for FCRL4 Gene

Genomic Location for FCRL4 Gene

Start:
157,573,749 bp from pter
End:
157,598,080 bp from pter
Size:
24,332 bases
Orientation:
Minus strand

Genomic View for FCRL4 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FCRL4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FCRL4 Gene

Proteins for FCRL4 Gene

  • Protein details for FCRL4 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96PJ5-FCRL4_HUMAN
    Recommended name:
    Fc receptor-like protein 4
    Protein Accession:
    Q96PJ5
    Secondary Accessions:
    • Q96PJ3
    • Q96RE0

    Protein attributes for FCRL4 Gene

    Size:
    515 amino acids
    Molecular mass:
    57224 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for FCRL4 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for FCRL4 Gene

Proteomics data for FCRL4 Gene at MOPED

Post-translational modifications for FCRL4 Gene

Other Protein References for FCRL4 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for FCRL4 Gene

Domains for FCRL4 Gene

Gene Families for FCRL4 Gene

HGNC:
  • CD :CD molecules
  • IGD :Immunoglobulin superfamily / Immunoglobulin-like domain containing

Protein Domains for FCRL4 Gene

Suggested Antigen Peptide Sequences for FCRL4 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q96PJ5

UniProtKB/Swiss-Prot:

FCRL4_HUMAN :
  • Q96PJ5
Domain:
  • Contains 4 Ig-like C2-type (immunoglobulin-like) domains.
genes like me logo Genes that share domains with FCRL4: view

Function for FCRL4 Gene

Molecular function for FCRL4 Gene

UniProtKB/Swiss-Prot Function: May function as an inhibitor of the B-cell receptor signaling. May function in the B-cell-mediated immune response.

Gene Ontology (GO) - Molecular Function for FCRL4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 21982860
genes like me logo Genes that share ontologies with FCRL4: view

Phenotypes for FCRL4 Gene

GenomeRNAi human phenotypes for FCRL4:
genes like me logo Genes that share phenotypes with FCRL4: view

miRNA for FCRL4 Gene

miRTarBase miRNAs that target FCRL4

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for FCRL4 Gene

Localization for FCRL4 Gene

Subcellular locations from UniProtKB/Swiss-Prot for FCRL4 Gene

Cell membrane; Single-pass type I membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for FCRL4 Gene COMPARTMENTS Subcellular localization image for FCRL4 gene
Compartment Confidence
plasma membrane 5
extracellular 2
cytosol 1
endoplasmic reticulum 1
golgi apparatus 1
mitochondrion 1
nucleus 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for FCRL4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane IEA --
GO:0016021 integral component of membrane IEA --
GO:0070062 extracellular exosome IDA 23376485
genes like me logo Genes that share ontologies with FCRL4: view

Pathways for FCRL4 Gene

SuperPathways for FCRL4 Gene

No Data Available

Interacting Proteins for FCRL4 Gene

STRING Interaction Network Preview (showing 2 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000271532%0d%0a9606.ENSP00000291527%0d%0a9606.ENSP00000291526%0d%0a
Selected Interacting proteins: ENSP00000271532 Q96PJ5-FCRL4_HUMAN for FCRL4 Gene via STRING UniProtKB

Gene Ontology (GO) - Biological Process for FCRL4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0002376 immune system process IEA --
genes like me logo Genes that share ontologies with FCRL4: view

No data available for Pathways by source for FCRL4 Gene

Transcripts for FCRL4 Gene

mRNA/cDNA for FCRL4 Gene

Unigene Clusters for FCRL4 Gene

Fc receptor-like 4:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FCRL4 Gene

No ASD Table

Relevant External Links for FCRL4 Gene

GeneLoc Exon Structure for
FCRL4
ECgene alternative splicing isoforms for
FCRL4

Expression for FCRL4 Gene

mRNA expression in normal human tissues for FCRL4 Gene

mRNA differential expression in normal tissues according to GTEx for FCRL4 Gene

This gene is overexpressed in Small Intestine - Terminal Ileum (14.2) and Spleen (5.7).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for FCRL4 Gene

SOURCE GeneReport for Unigene cluster for FCRL4 Gene Hs.120260

mRNA Expression by UniProt/SwissProt for FCRL4 Gene

Q96PJ5-FCRL4_HUMAN
Tissue specificity: Specifically expressed by memory and monocytoid B-cells which populate spleen and lymph nodes. Preferentially expressed in memory B-cells associated with mucosal tissue (at protein level).
genes like me logo Genes that share expressions with FCRL4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery for FCRL4 Gene

Orthologs for FCRL4 Gene

This gene was present in the common ancestor of chordates.

Orthologs for FCRL4 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia FCRL4 35
  • 98.77 (n)
  • 97.86 (a)
FCRL4 36
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia FCRL4 35
  • 76.39 (n)
  • 64.19 (a)
dog
(Canis familiaris)
Mammalia FCRL4 35
  • 76.12 (n)
  • 63.5 (a)
FCRL4 36
  • 63 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 44 (a)
OneToMany
-- 36
  • 36 (a)
OneToMany
-- 36
  • 36 (a)
OneToMany
-- 36
  • 37 (a)
OneToMany
-- 36
  • 44 (a)
OneToMany
-- 36
  • 30 (a)
OneToMany
chicken
(Gallus gallus)
Aves FCRL2 36
  • 36 (a)
OneToMany
Species with no ortholog for FCRL4:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for FCRL4 Gene

ENSEMBL:
Gene Tree for FCRL4 (if available)
TreeFam:
Gene Tree for FCRL4 (if available)

Paralogs for FCRL4 Gene

Selected SIMAP similar genes for FCRL4 Gene using alignment to 1 proteins:

Pseudogenes.org Pseudogenes for FCRL4 Gene

genes like me logo Genes that share paralogs with FCRL4: view

Variants for FCRL4 Gene

Sequence variations from dbSNP and Humsavar for FCRL4 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs14335 -- 157,575,060(-) TGGCT(A/G)CACAG utr-variant-3-prime, downstream-variant-500B
rs849825 -- 157,576,972(-) ATCTA(A/G)GAATT intron-variant
rs849826 -- 157,576,556(-) CAGAC(A/T)CTTGA intron-variant
rs849827 -- 157,575,441(-) GCGGC(A/C)CCTGG utr-variant-3-prime, downstream-variant-500B
rs849828 -- 157,575,257(-) TAATG(C/T)ATTCC utr-variant-3-prime, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for FCRL4 Gene

Variant ID Type Subtype PubMed ID
esv2718507 CNV Deletion 23290073
nsv3154 CNV Insertion 18451855
esv2661330 CNV Deletion 23128226

Relevant External Links for FCRL4 Gene

HapMap Linkage Disequilibrium report
FCRL4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FCRL4 Gene

Disorders for FCRL4 Gene

MalaCards: The human disease database

MalaCards: The human disease database. (4) Diseases for FCRL4 Gene including...

Search for FCRL4 Gene in MalaCards »

UniProtKB/Swiss-Prot

FCRL4_HUMAN
  • Note=A chromosomal aberration involving FCRL4 is found in non-Hodgkin lymphoma (NHG). Translocation t(1;1)(p36.3; q21.1-2).
  • Note=A chromosomal aberration involving FCRL4 is found in multiple myeloma (MM). Translocation t(1;14)(q21;q32) that forms a FCRL4-IGHA1 fusion protein.

Relevant External Links for FCRL4

Genetic Association Database (GAD)
FCRL4
Human Genome Epidemiology (HuGE) Navigator
FCRL4
genes like me logo Genes that share disorders with FCRL4: view

Publications for FCRL4 Gene

  1. IRTAs: a new family of immunoglobulin-like receptors differentially expressed in B cells. (PMID: 11929751) Miller I. … Dalla-Favera R. (Blood 2002) 3 4 23
  2. Expression of the IRTA1 receptor identifies intraepithelial and subepithelial marginal zone B cells of the mucosa-associated lymphoid tissue (MALT). (PMID: 12881317) Falini B. … Cattoretti G. (Blood 2003) 3 4 23
  3. IRTA1 and IRTA2, novel immunoglobulin superfamily receptors expressed in B cells and involved in chromosome 1q21 abnormalities in B cell malignancy. (PMID: 11290337) Hatzivassiliou G. … Dalla-Favera R. (Immunity 2001) 2 3 4
  4. Identification of a family of Fc receptor homologs with preferential B cell expression. (PMID: 11493702) Davis R.S. … Cooper M.D. (Proc. Natl. Acad. Sci. U.S.A. 2001) 2 3 4
  5. A family of highly diverse human and mouse genes structurally links leukocyte FcR, gp42 and PECAM-1. (PMID: 12037601) Guselnikov S.V. … Taranin A.V. (Immunogenetics 2002) 3 4

Products for FCRL4 Gene

Sources for FCRL4 Gene

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