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Aliases for FCRL1 Gene

Aliases for FCRL1 Gene

  • Fc Receptor-Like 1 2 3
  • FCRH1 3 4 6
  • Immune Receptor Translocation-Associated Protein 5 3 4
  • Fc Receptor Homolog 1 3 4
  • IFGP Family Protein 1 3 4
  • FcR-Like Protein 1 3 4
  • HIFGP1 3 4
  • IFGP1 3 4
  • IRTA5 3 4
  • Immunoglobulin Superfamily Fc Receptor, Gp42 3
  • Fc Receptor-Like Protein 1 3
  • CD307a Antigen 4
  • CD307a 3
  • FCRL1 4

External Ids for FCRL1 Gene

Previous GeneCards Identifiers for FCRL1 Gene

  • GC01M154579
  • GC01M156030
  • GC01M129122

Summaries for FCRL1 Gene

Entrez Gene Summary for FCRL1 Gene

  • This gene encodes a member of the immunoglobulin receptor superfamily and is one of several Fc receptor-like glycoproteins clustered on the long arm of chromosome 1. The encoded protein contains three extracellular C2-like immunoglobulin domains, a transmembrane domain and a cytoplasmic domain with two immunoreceptor-tyrosine activation motifs. This protein may play a role in the regulation of cancer cell growth. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Apr 2009]

GeneCards Summary for FCRL1 Gene

FCRL1 (Fc Receptor-Like 1) is a Protein Coding gene. Diseases associated with FCRL1 include chronic lymphocytic leukemia. An important paralog of this gene is FCRL2.

UniProtKB/Swiss-Prot for FCRL1 Gene

  • May function as an activating coreceptor in B-cells. May function in B-cells activation and differentiation.

Gene Wiki entry for FCRL1 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FCRL1 Gene

Genomics for FCRL1 Gene

Regulatory Elements for FCRL1 Gene

Genomic Location for FCRL1 Gene

Start:
157,794,403 bp from pter
End:
157,820,150 bp from pter
Size:
25,748 bases
Orientation:
Minus strand

Genomic View for FCRL1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FCRL1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FCRL1 Gene

Proteins for FCRL1 Gene

  • Protein details for FCRL1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96LA6-FCRL1_HUMAN
    Recommended name:
    Fc receptor-like protein 1
    Protein Accession:
    Q96LA6
    Secondary Accessions:
    • B2RE05
    • Q8N759
    • Q8NDI0
    • Q96PJ6

    Protein attributes for FCRL1 Gene

    Size:
    429 amino acids
    Molecular mass:
    46936 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for FCRL1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for FCRL1 Gene

Proteomics data for FCRL1 Gene at MOPED

Post-translational modifications for FCRL1 Gene

Other Protein References for FCRL1 Gene

Antibody Products

No data available for DME Specific Peptides for FCRL1 Gene

Domains for FCRL1 Gene

Gene Families for FCRL1 Gene

HGNC:
  • CD :CD molecules
  • IGD :Immunoglobulin superfamily / Immunoglobulin-like domain containing

Protein Domains for FCRL1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for FCRL1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q96LA6

UniProtKB/Swiss-Prot:

FCRL1_HUMAN :
  • Q96LA6
Domain:
  • Contains 3 Ig-like C2-type (immunoglobulin-like) domains.
genes like me logo Genes that share domains with FCRL1: view

Function for FCRL1 Gene

Molecular function for FCRL1 Gene

UniProtKB/Swiss-Prot Function: May function as an activating coreceptor in B-cells. May function in B-cells activation and differentiation.
UniProtKB/Swiss-Prot Induction: Down-regulated in activated B-cells.

Gene Ontology (GO) - Molecular Function for FCRL1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with FCRL1: view

Animal Model Products

CRISPR Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for FCRL1 Gene

Localization for FCRL1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for FCRL1 Gene

Cell membrane; Single-pass type I membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for FCRL1 Gene COMPARTMENTS Subcellular localization image for FCRL1 gene
Compartment Confidence
plasma membrane 5
cytosol 1
endoplasmic reticulum 1
extracellular 1
golgi apparatus 1

Gene Ontology (GO) - Cellular Components for FCRL1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with FCRL1: view

Pathways for FCRL1 Gene

SuperPathways for FCRL1 Gene

No Data Available

Interacting Proteins for FCRL1 Gene

Gene Ontology (GO) - Biological Process for FCRL1 Gene

None

No data available for Pathways by source for FCRL1 Gene

Transcripts for FCRL1 Gene

Unigene Clusters for FCRL1 Gene

Fc receptor-like 1:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for FCRL1

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for FCRL1 Gene

ExUns: 1 ^ 2 ^ 3a · 3b ^ 4a · 4b ^ 5a · 5b · 5c ^ 6a · 6b ^ 7 ^ 8 ^ 9 ^ 10 ^ 11
SP1: - - -
SP2: - -
SP3: - -
SP4: - - -
SP5: - - -
SP6: - -
SP7:

Relevant External Links for FCRL1 Gene

GeneLoc Exon Structure for
FCRL1
ECgene alternative splicing isoforms for
FCRL1

Expression for FCRL1 Gene

mRNA expression in normal human tissues for FCRL1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for FCRL1 Gene

This gene is overexpressed in Spleen (22.5), Small Intestine - Terminal Ileum (13.5), and Whole Blood (11.0).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for FCRL1 Gene

SOURCE GeneReport for Unigene cluster for FCRL1 Gene Hs.656112

mRNA Expression by UniProt/SwissProt for FCRL1 Gene

Q96LA6-FCRL1_HUMAN
Tissue specificity: Primarily expressed in secondary lymphoid tissues by mature subsets of B-cells. Detected in spleen, lymph node, heart, skeletal muscle, kidney, liver and placenta. Specifically expressed by mature B lineage cells with higher expression in naive versus memory B-cells (at protein level).
genes like me logo Genes that share expressions with FCRL1: view

In Situ Assay Products

Orthologs for FCRL1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for FCRL1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia FCRL1 35
  • 99.07 (n)
  • 98.6 (a)
FCRL1 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia FCRL1 35
  • 76.52 (n)
  • 64.61 (a)
FCRL1 36
  • 63 (a)
OneToOne
dog
(Canis familiaris)
Mammalia FCRL1 35
  • 72.82 (n)
  • 63.31 (a)
FCRL1 36
  • 65 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Fcrl1 35
  • 75.16 (n)
  • 59.75 (a)
Fcrl1 16
Fcrl1 36
  • 56 (a)
OneToOne
chicken
(Gallus gallus)
Aves FCRL2 36
  • 21 (a)
OneToMany
Species with no ortholog for FCRL1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for FCRL1 Gene

ENSEMBL:
Gene Tree for FCRL1 (if available)
TreeFam:
Gene Tree for FCRL1 (if available)

Paralogs for FCRL1 Gene

Selected SIMAP similar genes for FCRL1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with FCRL1: view

Variants for FCRL1 Gene

Sequence variations from dbSNP and Humsavar for FCRL1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs1016849 -- 157,795,174(-) tcacc(A/G)ttttg utr-variant-3-prime, downstream-variant-500B
rs1051553 -- 157,809,290(+) gtggc(C/T)catga intron-variant
rs1059464 -- 157,795,855(-) CGGCT(C/T)CTTTG utr-variant-3-prime
rs1059468 -- 157,795,372(-) CTTAA(C/T)TATTT utr-variant-3-prime, downstream-variant-500B
rs1073857 -- 157,814,610(+) agtcc(A/G)tacct intron-variant

Relevant External Links for FCRL1 Gene

HapMap Linkage Disequilibrium report
FCRL1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for FCRL1 Gene

Disorders for FCRL1 Gene

MalaCards: The human disease database

MalaCards: The human disease database. (1) Diseases for FCRL1 Gene including...

Search for FCRL1 Gene in MalaCards »

Relevant External Links for FCRL1

Genetic Association Database (GAD)
FCRL1
Human Genome Epidemiology (HuGE) Navigator
FCRL1
genes like me logo Genes that share disorders with FCRL1: view

No data available for UniProtKB/Swiss-Prot for FCRL1 Gene

Publications for FCRL1 Gene

  1. Identification of a family of Fc receptor homologs with preferential B cell expression. (PMID: 11493702) Davis R.S. … Cooper M.D. (Proc. Natl. Acad. Sci. U.S.A. 2001) 2 3 4
  2. IRTAs: a new family of immunoglobulin-like receptors differentially expressed in B cells. (PMID: 11929751) Miller I. … Dalla-Favera R. (Blood 2002) 2 3 4
  3. A family of highly diverse human and mouse genes structurally links leukocyte FcR, gp42 and PECAM-1. (PMID: 12037601) Guselnikov S.V. … Taranin A.V. (Immunogenetics 2002) 3 4
  4. Expression pattern of the human FcRH/IRTA receptors in normal tissue and in B-chronic lymphocytic leukemia. (PMID: 16849395) Polson A.G. … Ebens A. (Int. Immunol. 2006) 3 4
  5. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 48

Products for FCRL1 Gene

Sources for FCRL1 Gene

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