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Aliases for FCHSD2 Gene

Aliases for FCHSD2 Gene

  • FCH And Double SH3 Domains 2 2 3 5
  • SH3 Multiple Domains Protein 3 3 4
  • SH3 Multiple Domains 3 2 3
  • SH3MD3 3 4
  • Carom 3 4
  • FCH And Double SH3 Domains Protein 2 3
  • Nervous Wreck Homolog 3
  • KIAA0769 4
  • NWK 3

External Ids for FCHSD2 Gene

Previous HGNC Symbols for FCHSD2 Gene

  • SH3MD3

Previous GeneCards Identifiers for FCHSD2 Gene

  • GC11M072275
  • GC11M072225
  • GC11M072547
  • GC11M068842

Summaries for FCHSD2 Gene

GeneCards Summary for FCHSD2 Gene

FCHSD2 (FCH And Double SH3 Domains 2) is a Protein Coding gene. An important paralog of this gene is FCHSD1.

Gene Wiki entry for FCHSD2 Gene

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FCHSD2 Gene

Genomics for FCHSD2 Gene

Regulatory Elements for FCHSD2 Gene

Enhancers for FCHSD2 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around FCHSD2 on UCSC Golden Path with GeneCards custom track

Promoters for FCHSD2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around FCHSD2 on UCSC Golden Path with GeneCards custom track

Genomic Location for FCHSD2 Gene

Chromosome:
11
Start:
72,836,743 bp from pter
End:
73,142,454 bp from pter
Size:
305,712 bases
Orientation:
Minus strand

Genomic View for FCHSD2 Gene

Genes around FCHSD2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FCHSD2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FCHSD2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FCHSD2 Gene

Proteins for FCHSD2 Gene

  • Protein details for FCHSD2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O94868-FCSD2_HUMAN
    Recommended name:
    F-BAR and double SH3 domains protein 2
    Protein Accession:
    O94868
    Secondary Accessions:
    • B4DNI3
    • Q7L8J9
    • Q8WVM2
    • Q96FV7
    • Q9UF77

    Protein attributes for FCHSD2 Gene

    Size:
    740 amino acids
    Molecular mass:
    84276 Da
    Quaternary structure:
    • Interacts with CASK and MAGI1. CASK inhibits interaction with MAGI1.
    SequenceCaution:
    • Sequence=BAA34489.2; Type=Erroneous initiation; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for FCHSD2 Gene

    Alternative splice isoforms for FCHSD2 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for FCHSD2 Gene

Proteomics data for FCHSD2 Gene at MOPED

Post-translational modifications for FCHSD2 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for FCHSD2 Gene

Domains & Families for FCHSD2 Gene

Protein Domains for FCHSD2 Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for FCHSD2 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

O94868

UniProtKB/Swiss-Prot:

FCSD2_HUMAN :
  • Contains 1 F-BAR domain.
Domain:
  • Contains 1 F-BAR domain.
  • Contains 2 SH3 domains.
genes like me logo Genes that share domains with FCHSD2: view

No data available for Gene Families for FCHSD2 Gene

Function for FCHSD2 Gene

genes like me logo Genes that share phenotypes with FCHSD2: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for FCHSD2 Gene

Localization for FCHSD2 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for FCHSD2 Gene COMPARTMENTS Subcellular localization image for FCHSD2 gene
Compartment Confidence
nucleus 4
cytoskeleton 2
cytosol 2
plasma membrane 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for FCHSD2 Gene

Pathways & Interactions for FCHSD2 Gene

SuperPathways for FCHSD2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for FCHSD2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FCHSD2 Gene

Drugs & Compounds for FCHSD2 Gene

No Compound Related Data Available

Transcripts for FCHSD2 Gene

Unigene Clusters for FCHSD2 Gene

FCH and double SH3 domains 2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FCHSD2 Gene

No ASD Table

Relevant External Links for FCHSD2 Gene

GeneLoc Exon Structure for
FCHSD2
ECgene alternative splicing isoforms for
FCHSD2

Expression for FCHSD2 Gene

mRNA expression in normal human tissues for FCHSD2 Gene

Protein differential expression in normal tissues from HIPED for FCHSD2 Gene

This gene is overexpressed in Lymph node (24.4), Blymphocyte (22.5), and Peripheral blood mononuclear cells (9.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for FCHSD2 Gene



SOURCE GeneReport for Unigene cluster for FCHSD2 Gene Hs.744959

mRNA Expression by UniProt/SwissProt for FCHSD2 Gene

O94868-FCSD2_HUMAN
Tissue specificity: Liver, brain, heart, placenta, skeletal muscle, pancreas, lung and kidney.
genes like me logo Genes that share expression patterns with FCHSD2: view

Protein tissue co-expression partners for FCHSD2 Gene

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA differential expression in normal tissues for FCHSD2 Gene

Orthologs for FCHSD2 Gene

This gene was present in the common ancestor of animals.

Orthologs for FCHSD2 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia FCHSD2 35
  • 94.28 (n)
  • 97.03 (a)
FCHSD2 36
  • 97 (a)
OneToOne
dog
(Canis familiaris)
Mammalia FCHSD2 35
  • 94.55 (n)
  • 97.03 (a)
FCHSD2 36
  • 97 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Fchsd2 35
  • 91.8 (n)
  • 96.49 (a)
Fchsd2 16
Fchsd2 36
  • 93 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia FCHSD2 35
  • 99.23 (n)
  • 99.32 (a)
FCHSD2 36
  • 99 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Fchsd2 35
  • 91.26 (n)
  • 96.03 (a)
oppossum
(Monodelphis domestica)
Mammalia FCHSD2 36
  • 89 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia FCHSD2 36
  • 91 (a)
OneToOne
chicken
(Gallus gallus)
Aves FCHSD2 35
  • 80.48 (n)
  • 88.18 (a)
FCHSD2 36
  • 83 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia FCHSD2 36
  • 88 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia fchsd2 35
  • 74.41 (n)
  • 83.31 (a)
zebrafish
(Danio rerio)
Actinopterygii LOC100536596 35
  • 64.41 (n)
  • 61.1 (a)
CABZ01070631.1 36
  • 74 (a)
OneToMany
CU570791.5 36
  • 61 (a)
OneToMany
FCHSD2 (3 of 5) 36
  • 71 (a)
OneToMany
FCHSD2 (4 of 5) 36
  • 73 (a)
OneToMany
FCHSD2 (5 of 5) 36
  • 55 (a)
OneToMany
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP006774 35
  • 47.49 (n)
  • 40.64 (a)
fruit fly
(Drosophila melanogaster)
Insecta nwk 35
  • 49.24 (n)
  • 41.46 (a)
nwk 36
  • 22 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.10491 36
  • 38 (a)
OneToMany
Species with no ortholog for FCHSD2:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for FCHSD2 Gene

ENSEMBL:
Gene Tree for FCHSD2 (if available)
TreeFam:
Gene Tree for FCHSD2 (if available)

Paralogs for FCHSD2 Gene

Paralogs for FCHSD2 Gene

(4) SIMAP similar genes for FCHSD2 Gene using alignment to 7 proteins:

genes like me logo Genes that share paralogs with FCHSD2: view

Variants for FCHSD2 Gene

Sequence variations from dbSNP and Humsavar for FCHSD2 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs537980 -- 72,980,199(-) AAACC(C/T)CAAAC intron-variant
rs555773 -- 72,973,166(+) AGTTC(A/G)AGACC intron-variant
rs560258 -- 72,973,637(+) GGGAG(A/G)TTTCC intron-variant
rs573529 -- 72,976,504(+) caaac(G/T)cttgg intron-variant
rs593301 -- 72,980,296(+) GAAAC(C/T)GCTGC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FCHSD2 Gene

Variant ID Type Subtype PubMed ID
esv2422418 CNV Duplication 17116639
nsv386 CNV Loss 18451855

Variation tolerance for FCHSD2 Gene

Residual Variation Intolerance Score: 18.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.20; 39.76% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Relevant External Links for FCHSD2 Gene

Disorders for FCHSD2 Gene

Relevant External Links for FCHSD2

Genetic Association Database (GAD)
FCHSD2
Human Genome Epidemiology (HuGE) Navigator
FCHSD2
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FCHSD2

No disorders were found for FCHSD2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FCHSD2 Gene

Publications for FCHSD2 Gene

  1. Identification and characterization of human FCHSD1 and FCHSD2 genes in silico. (PMID: 15067381) Katoh M. … Katoh M. (Int. J. Mol. Med. 2004) 2 3 4 23 67
  2. Prediction of the coding sequences of unidentified human genes. XI. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PMID: 9872452) Nagase T. … Ohara O. (DNA Res. 1998) 2 3
  3. Genome-wide association study of Crohn's disease in Koreans revealed three new susceptibility loci and common attributes of genetic susceptibility across ethnic populations. (PMID: 23850713) Yang S.K. … Song K. (Gut 2014) 3
  4. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3
  5. A genome-wide association study identifies 2 susceptibility Loci for Crohn's disease in a Japanese population. (PMID: 23266558) Yamazaki K. … Kubo M. (Gastroenterology 2013) 3

Products for FCHSD2 Gene

Sources for FCHSD2 Gene

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