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Aliases for FCHSD2 Gene

Aliases for FCHSD2 Gene

  • FCH And Double SH3 Domains 2 2 3 5
  • SH3 Multiple Domains Protein 3 3 4
  • SH3 Multiple Domains 3 2 3
  • SH3MD3 3 4
  • Carom 3 4
  • F-BAR And Double SH3 Domains Protein 2 3
  • FCH And Double SH3 Domains Protein 2 3
  • Nervous Wreck Homolog 3
  • KIAA0769 4
  • NWK 3

External Ids for FCHSD2 Gene

Previous HGNC Symbols for FCHSD2 Gene

  • SH3MD3

Previous GeneCards Identifiers for FCHSD2 Gene

  • GC11M072275
  • GC11M072225
  • GC11M072547
  • GC11M068842

Summaries for FCHSD2 Gene

GeneCards Summary for FCHSD2 Gene

FCHSD2 (FCH And Double SH3 Domains 2) is a Protein Coding gene. Diseases associated with FCHSD2 include Deafness, Autosomal Recessive 63. An important paralog of this gene is FCHSD1.

Gene Wiki entry for FCHSD2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FCHSD2 Gene

Genomics for FCHSD2 Gene

Regulatory Elements for FCHSD2 Gene

Enhancers for FCHSD2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11G073150 1.9 FANTOM5 Ensembl ENCODE dbSUPER 14.8 -13.3 -13286 10.3 HDGF PKNOX1 FOXA2 ATF1 MLX WRNIP1 ARID4B SIN3A ZNF48 ELK1 FCHSD2 STARD10 LINC01537 FAM168A ENSG00000256568
GH11G073138 1.8 FANTOM5 ENCODE dbSUPER 13 0.0 -15 7.4 MLX CREB3L1 ZFP64 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 MCM3 ARPC3P4 FAM168A FCHSD2 PAAF1 ARAP1 RELT ATG16L2 STARD10 PDE2A ENSG00000256568
GH11G073268 1.7 FANTOM5 Ensembl ENCODE dbSUPER 12.1 -129.6 -129593 7.7 HDAC1 PKNOX1 FOXA2 ARID4B SIN3A SCRT2 FOS RCOR1 IKZF2 SMARCC1 RELT FCHSD2 ENSG00000215841 P2RY2 ARHGEF17 P2RY6
GH11G073173 1.5 Ensembl ENCODE dbSUPER 11.8 -33.6 -33637 5.4 FOXA2 ATF1 ARID4B DMAP1 ZNF2 YY1 ZNF143 FOS SP5 MXD4 FCHSD2 RNU6-672P STARD10 ARAP1 ENSG00000256568
GH11G072950 1.6 FANTOM5 Ensembl ENCODE dbSUPER 11 +190.2 190236 3.8 BCOR HDGF ZMYM3 MAX RAD21 ZKSCAN1 RELA ZNF600 RELB IKZF2 FCHSD2 RNU6-672P ATG16L2 RELT STARD10 ARAP1 RPL15P16 GC11M072974
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FCHSD2 on UCSC Golden Path with GeneCards custom track

Promoters for FCHSD2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000041813 854 2801 MLX CREB3L1 ZFP64 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 MCM3

Genomic Location for FCHSD2 Gene

Chromosome:
11
Start:
72,836,743 bp from pter
End:
73,142,454 bp from pter
Size:
305,712 bases
Orientation:
Minus strand

Genomic View for FCHSD2 Gene

Genes around FCHSD2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FCHSD2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FCHSD2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FCHSD2 Gene

Proteins for FCHSD2 Gene

  • Protein details for FCHSD2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O94868-FCSD2_HUMAN
    Recommended name:
    F-BAR and double SH3 domains protein 2
    Protein Accession:
    O94868
    Secondary Accessions:
    • B4DNI3
    • Q7L8J9
    • Q8WVM2
    • Q96FV7
    • Q9UF77

    Protein attributes for FCHSD2 Gene

    Size:
    740 amino acids
    Molecular mass:
    84276 Da
    Quaternary structure:
    • Interacts with CASK and MAGI1. CASK inhibits interaction with MAGI1.
    SequenceCaution:
    • Sequence=BAA34489.2; Type=Erroneous initiation; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for FCHSD2 Gene

    Alternative splice isoforms for FCHSD2 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for FCHSD2 Gene

Post-translational modifications for FCHSD2 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for FCHSD2 Gene

Domains & Families for FCHSD2 Gene

Gene Families for FCHSD2 Gene

Protein Domains for FCHSD2 Gene

Suggested Antigen Peptide Sequences for FCHSD2 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with FCHSD2: view

No data available for UniProtKB/Swiss-Prot for FCHSD2 Gene

Function for FCHSD2 Gene

Gene Ontology (GO) - Molecular Function for FCHSD2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 14627983
genes like me logo Genes that share ontologies with FCHSD2: view
genes like me logo Genes that share phenotypes with FCHSD2: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for FCHSD2 Gene

Localization for FCHSD2 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for FCHSD2 gene
Compartment Confidence
nucleus 4
endosome 3
plasma membrane 2
cytoskeleton 2
cytosol 2

Gene Ontology (GO) - Cellular Components for FCHSD2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0031594 neuromuscular junction IBA --
GO:0055037 recycling endosome IBA --
genes like me logo Genes that share ontologies with FCHSD2: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for FCHSD2 Gene

Pathways & Interactions for FCHSD2 Gene

SuperPathways for FCHSD2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for FCHSD2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007274 neuromuscular synaptic transmission IBA --
GO:0030833 regulation of actin filament polymerization IBA --
genes like me logo Genes that share ontologies with FCHSD2: view

No data available for Pathways by source and SIGNOR curated interactions for FCHSD2 Gene

Drugs & Compounds for FCHSD2 Gene

No Compound Related Data Available

Transcripts for FCHSD2 Gene

Unigene Clusters for FCHSD2 Gene

FCH and double SH3 domains 2:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for FCHSD2 Gene

No ASD Table

Relevant External Links for FCHSD2 Gene

GeneLoc Exon Structure for
FCHSD2
ECgene alternative splicing isoforms for
FCHSD2

Expression for FCHSD2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FCHSD2 Gene

Protein differential expression in normal tissues from HIPED for FCHSD2 Gene

This gene is overexpressed in Lymph node (24.4), Blymphocyte (22.5), and Peripheral blood mononuclear cells (9.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for FCHSD2 Gene



Protein tissue co-expression partners for FCHSD2 Gene

NURSA nuclear receptor signaling pathways regulating expression of FCHSD2 Gene:

FCHSD2

SOURCE GeneReport for Unigene cluster for FCHSD2 Gene:

Hs.744959

mRNA Expression by UniProt/SwissProt for FCHSD2 Gene:

O94868-FCSD2_HUMAN
Tissue specificity: Liver, brain, heart, placenta, skeletal muscle, pancreas, lung and kidney.

Evidence on tissue expression from TISSUES for FCHSD2 Gene

  • Nervous system(4.6)
  • Bone marrow(4.3)
  • Lung(4.3)
  • Kidney(4.2)
genes like me logo Genes that share expression patterns with FCHSD2: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and Phenotype-based relationships between genes and organs from Gene ORGANizer for FCHSD2 Gene

Orthologs for FCHSD2 Gene

This gene was present in the common ancestor of animals.

Orthologs for FCHSD2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia FCHSD2 34 35
  • 99.23 (n)
dog
(Canis familiaris)
Mammalia FCHSD2 34 35
  • 94.55 (n)
cow
(Bos Taurus)
Mammalia FCHSD2 34 35
  • 94.28 (n)
mouse
(Mus musculus)
Mammalia Fchsd2 34 16 35
  • 91.8 (n)
rat
(Rattus norvegicus)
Mammalia Fchsd2 34
  • 91.26 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia FCHSD2 35
  • 91 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia FCHSD2 35
  • 89 (a)
OneToOne
chicken
(Gallus gallus)
Aves FCHSD2 34 35
  • 80.48 (n)
lizard
(Anolis carolinensis)
Reptilia FCHSD2 35
  • 88 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia fchsd2 34
  • 74.41 (n)
zebrafish
(Danio rerio)
Actinopterygii CABZ01070631.1 35
  • 74 (a)
OneToMany
FCHSD2 (4 of 5) 35
  • 73 (a)
OneToMany
FCHSD2 (3 of 5) 35
  • 71 (a)
OneToMany
LOC100536596 34
  • 64.41 (n)
CU570791.5 35
  • 61 (a)
OneToMany
FCHSD2 (5 of 5) 35
  • 55 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta nwk 34 35
  • 49.24 (n)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP006774 34
  • 47.49 (n)
sea squirt
(Ciona savignyi)
Ascidiacea CSA.10491 35
  • 38 (a)
OneToMany
Species where no ortholog for FCHSD2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for FCHSD2 Gene

ENSEMBL:
Gene Tree for FCHSD2 (if available)
TreeFam:
Gene Tree for FCHSD2 (if available)

Paralogs for FCHSD2 Gene

Paralogs for FCHSD2 Gene

(4) SIMAP similar genes for FCHSD2 Gene using alignment to 7 proteins:

genes like me logo Genes that share paralogs with FCHSD2: view

Variants for FCHSD2 Gene

Sequence variations from dbSNP and Humsavar for FCHSD2 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs1000016894 -- 72,928,986(+) TTTGT(C/T)CTTGC intron-variant
rs1000031260 -- 73,027,820(+) TGCTC(C/T)AGCTC intron-variant
rs1000037748 -- 72,946,192(+) ACATA(C/T)ACACC intron-variant
rs1000074853 -- 72,887,130(+) GGAGA(G/T)ATATA intron-variant
rs1000076386 -- 73,076,564(+) CAGCC(A/G)CAGGA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FCHSD2 Gene

Variant ID Type Subtype PubMed ID
esv2422418 CNV duplication 17116639
esv3626807 CNV loss 21293372
esv3626808 CNV loss 21293372
nsv1144576 CNV deletion 24896259
nsv386 CNV deletion 18451855
nsv555411 CNV loss 21841781
nsv951040 CNV duplication 24416366
nsv983042 CNV duplication 23825009

Variation tolerance for FCHSD2 Gene

Residual Variation Intolerance Score: 18.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.20; 39.76% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for FCHSD2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FCHSD2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FCHSD2 Gene

Disorders for FCHSD2 Gene

MalaCards: The human disease database

(1) MalaCards diseases for FCHSD2 Gene - From: DISEASES

Disorder Aliases PubMed IDs
deafness, autosomal recessive 63
  • autosomal recessive nonsyndromic deafness 63
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for FCHSD2

Genetic Association Database (GAD)
FCHSD2
Human Genome Epidemiology (HuGE) Navigator
FCHSD2
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FCHSD2
genes like me logo Genes that share disorders with FCHSD2: view

No data available for UniProtKB/Swiss-Prot and Genatlas for FCHSD2 Gene

Publications for FCHSD2 Gene

  1. Identification and characterization of human FCHSD1 and FCHSD2 genes in silico. (PMID: 15067381) Katoh M. … Katoh M. (Int. J. Mol. Med. 2004) 2 3 4 22 64
  2. Prediction of the coding sequences of unidentified human genes. XI. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PMID: 9872452) Nagase T. … Ohara O. (DNA Res. 1998) 2 3 4 64
  3. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 46 64
  4. Human chromosome 11 DNA sequence and analysis including novel gene identification. (PMID: 16554811) Taylor T.D. … Sakaki Y. (Nature 2006) 3 4 64
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64

Products for FCHSD2 Gene

Sources for FCHSD2 Gene

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