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FCGR1CP Gene(Pseudogene)

Fc Fragment Of IgG Receptor Ic, Pseudogene

GCID:
GC01P143878
GIFtS:
13
Genes Participants
UDN Logo

Aliases for FCGR1CP Gene

Aliases for FCGR1CP Gene

  • Fc Fragment Of IgG Receptor Ic, Pseudogene 2 3 5
  • Fc Fragment Of IgG, High Affinity Ic, Receptor (CD64), Pseudogene 2 3
  • Fc Fragment Of IgG, High Affinity Ic, Receptor For (CD64) 2 3
  • Fc Fragment Of IgG, High Affinity Ic, Receptor (CD64) 2
  • Immunoglobulin Gamma Fc Receptor 1C 3
  • FCGR1C 3
  • IGFR1 3
  • CD64c 3
  • FCRIC 3
  • IGFRC 3

External Ids for FCGR1CP Gene

Previous HGNC Symbols for FCGR1CP Gene

  • FCGR1C

Summaries for FCGR1CP Gene

Entrez Gene Summary for FCGR1CP Gene

  • The gene represents one of three related immunoglobulin gamma Fc receptor genes located on chromosome 1. This family member lacks the transmembrane and coiled-coiled domains found in other family members and is thought to be a pseudogene of Fc-gamma-receptor 1A. [provided by RefSeq, Apr 2009]

GeneCards Summary for FCGR1CP Gene

FCGR1CP (Fc Fragment Of IgG Receptor Ic, Pseudogene) is a Pseudogene.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FCGR1CP Gene

Genomics for FCGR1CP Gene

Products:

  1. Regulatory Element

Regulatory Elements for FCGR1CP Gene

Enhancers for FCGR1CP Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G143879 1.1 Ensembl ENCODE 0.4 +5.5 5458 1.6 HDAC1 ATF1 TBL1XR1 ARNT ZBTB40 CHAMP1 TCF12 EGR1 CEBPB ELF4 LOC100996713 FCGR1CP
GH01G143867 0.9 Ensembl 0.4 -6.7 -6718 1.2 HDAC1 PKNOX1 ATF1 ARNT CHAMP1 EGR1 KLF13 CAVIN1 CEBPB NCOA1 FCGR1CP TRR-CCT7-1
GH01G143884 0.8 ENCODE 0.4 +10.3 10339 1.0 CTCF ESRRA ATF1 RB1 KLF17 UBTF ZIC2 RAD21 TCF12 GLIS2 LOC100996713 FCGR1CP
GH01G143874 0.4 Ensembl 0.7 +0.7 658 2.4 L3MBTL2 FCGR1CP LOC100996713
GH01G143877 0.2 Ensembl 0.7 +3.0 2958 1.0 FCGR1CP LOC100996713
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FCGR1CP on UCSC Golden Path with GeneCards custom track

Genomic Location for FCGR1CP Gene

Chromosome:
1
Start:
143,874,743 bp from pter
End:
143,883,733 bp from pter
Size:
8,991 bases
Orientation:
Plus strand

Genomic View for FCGR1CP Gene

Genes around FCGR1CP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FCGR1CP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FCGR1CP Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for FCGR1CP Gene

Proteins for FCGR1CP Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for FCGR1CP Gene

No Post-translational modifications

No data available for DME Specific Peptides for FCGR1CP Gene

Domains & Families for FCGR1CP Gene

Gene Families for FCGR1CP Gene

HGNC:

Suggested Antigen Peptide Sequences for FCGR1CP Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with FCGR1CP: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for FCGR1CP Gene

Function for FCGR1CP Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Phenotypes for FCGR1CP Gene

GenomeRNAi human phenotypes for FCGR1CP:
genes like me logo Genes that share phenotypes with FCGR1CP: view

Inhibitory RNA Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FCGR1CP Gene

Localization for FCGR1CP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FCGR1CP Gene

Pathways & Interactions for FCGR1CP Gene

SuperPathways for FCGR1CP Gene

PathCards logo More details on SuperPathways for FCGR1CP
No Data Available

Interacting Proteins for FCGR1CP Gene

Gene Ontology (GO) - Biological Process for FCGR1CP Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FCGR1CP Gene

Drugs & Compounds for FCGR1CP Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for FCGR1CP Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for FCGR1CP Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for FCGR1CP Gene

No ASD Table

Relevant External Links for FCGR1CP Gene

GeneLoc Exon Structure for
FCGR1CP
ECgene alternative splicing isoforms for
FCGR1CP

Expression for FCGR1CP Gene

Products:

  1. Primer

NURSA nuclear receptor signaling pathways regulating expression of FCGR1CP Gene:

FCGR1CP
No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FCGR1CP Gene

Orthologs for FCGR1CP Gene

Evolution for FCGR1CP Gene

ENSEMBL:
Gene Tree for FCGR1CP (if available)
TreeFam:
Gene Tree for FCGR1CP (if available)

No data available for Orthologs for FCGR1CP Gene

Paralogs for FCGR1CP Gene

No data available for Paralogs for FCGR1CP Gene

Variants for FCGR1CP Gene

Sequence variations from dbSNP and Humsavar for FCGR1CP Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs111756820 -- 143,882,184(+) CCTGA(A/G)CTGTG intron-variant, nc-transcript-variant
rs111785101 -- 143,883,935(+) AGAGA(C/G)ACACA intron-variant, downstream-variant-500B
rs113243187 -- 143,882,007(+) TGGAT(G/T)CATTT intron-variant
rs115306875 -- 143,880,650(+) AAAGC(A/G)TCACT intron-variant, nc-transcript-variant
rs115653959 -- 143,872,900(+) AAGGC(A/T)TGGGG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for FCGR1CP Gene

Variant ID Type Subtype PubMed ID
dgv22n111 CNV deletion 26073780
dgv360n100 CNV loss 25217958
dgv378n100 CNV gain 25217958
dgv379n100 CNV loss 25217958
dgv380n100 CNV gain+loss 25217958
dgv381n100 CNV gain 25217958
dgv383n100 CNV loss 25217958
dgv396n100 CNV loss 25217958
dgv397n100 CNV loss 25217958
dgv404n100 CNV gain 25217958
dgv413n100 CNV loss 25217958
dgv536n54 CNV gain 21841781
dgv543n54 CNV gain+loss 21841781
dgv545n54 CNV loss 21841781
esv21838 CNV gain+loss 19812545
esv2421626 CNV deletion 20811451
esv26241 CNV gain+loss 19812545
esv2963790 CNV duplication 24192839
esv3584603 CNV loss 24956385
esv3584608 CNV loss 24956385
esv3894156 CNV loss 25118596
esv3894189 CNV gain+loss 25118596
nsv1014796 CNV loss 25217958
nsv10772 CNV gain 18304495
nsv1126216 CNV deletion 24896259
nsv436282 CNV deletion 17901297
nsv946199 CNV duplication 23825009
nsv946361 CNV duplication 23825009
nsv998643 CNV gain 25217958

Relevant External Links for FCGR1CP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FCGR1CP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FCGR1CP Gene

Disorders for FCGR1CP Gene

Relevant External Links for FCGR1CP

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FCGR1CP

No disorders were found for FCGR1CP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FCGR1CP Gene

Publications for FCGR1CP Gene

  1. Localization of FCGR1 encoding Fcgamma receptor class I in primates: molecular evidence for two pericentric inversions during the evolution of human chromosome 1. (PMID: 9763663) Maresco D.L. … Theil K.S. (Cytogenet. Cell Genet. 1998) 2 3 64
  2. The three genes of the human FCGR1 gene family encoding Fc gamma RI flank the centromere of chromosome 1 at 1p12 and 1q21. (PMID: 8697799) Maresco D.L. … Anderson C.L. (Cytogenet. Cell Genet. 1996) 2 3 64
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  4. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 3 64
  5. Phagocytic signaling strategies: Fc(gamma)receptor-mediated phagocytosis as a model system. (PMID: 11708889) Cox D. … Greenberg S. (Semin. Immunol. 2001) 3 64

Products for FCGR1CP Gene

Sources for FCGR1CP Gene

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