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Aliases for FCF1P2 Gene

Subcategory (RNA class) for FCF1P2 Gene

lncRNA

Aliases for FCF1P2 Gene

  • FCF1 Pseudogene 2 2 3 5
  • FCF1 Small Subunit (SSU) Processome Component Homolog (S. Cerevisiae) Pseudogene 2 2

External Ids for FCF1P2 Gene

ORGUL Members for FCF1P2 Gene

Previous GeneCards Identifiers for FCF1P2 Gene

  • GC03M048333

Summaries for FCF1P2 Gene

GeneCards Summary for FCF1P2 Gene

FCF1P2 (FCF1 Pseudogene 2) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FCF1P2 Gene

Genomics for FCF1P2 Gene

Regulatory Elements for FCF1P2 Gene

Enhancers for FCF1P2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F048593 1.2 Ensembl ENCODE 22.1 -306.0 -305962 7.5 HDGF PKNOX1 ARID4B SIN3A DMAP1 FEZF1 ZNF2 ZNF143 ZNF207 FOS NICN1 FCF1P2 WDR6 LOC105377080 TMEM89 ZNF589 LAMB2 COL7A1 UQCRC1
GH03F048551 1.3 FANTOM5 ENCODE 12.1 -267.9 -267896 15.4 HDGF PKNOX1 MLX WRNIP1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZNF207 TMA7 WDR6 NICN1 FCF1P2 MIR711 COL7A1 ATRIP ENSG00000244380 CCDC51 FBXW12
GH03F049016 0.2 ENCODE 12.1 -728.9 -728886 6.8 PKNOX1 CREB3L1 WRNIP1 ZFP64 ARID4B SIN3A FEZF1 ZNF2 YY1 ZNF207 WDR6 AMT BSN-AS1 LOC105377080 C3orf84 RPL17P16 NDUFB1P1 PHF5EP RN7SL664P NICN1
GH03F047824 0.4 ENCODE 12.1 +466.1 466096 2.3 HDGF CREB3L1 ARID4B SIN3A DMAP1 YY1 CBX5 ZNF207 ZNF143 KLF13 ZNF589 DHX30 MIR1226 MAP4 FCF1P2 ENSG00000260236 CDC25A ENSG00000274420 GC03P047842 GC03P047843
GH03F047522 1.1 Ensembl ENCODE 11.7 +768.9 768912 0.9 HDGF ATF1 ARNT CREB3L1 SIN3A ARID4B DMAP1 ZNF48 SLC30A9 CBX5 FCF1P2 PRSS50 ZNF589 KLHL18 CCDC12 ELP6 LOC105377074
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around FCF1P2 on UCSC Golden Path with GeneCards custom track

Genomic Location for FCF1P2 Gene

Chromosome:
3
Start:
48,290,279 bp from pter
End:
48,291,375 bp from pter
Size:
1,097 bases
Orientation:
Minus strand

Genomic View for FCF1P2 Gene

Genes around FCF1P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FCF1P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FCF1P2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FCF1P2 Gene

Proteins for FCF1P2 Gene

Post-translational modifications for FCF1P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FCF1P2 Gene

Domains & Families for FCF1P2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FCF1P2 Gene

Function for FCF1P2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FCF1P2 Gene

Localization for FCF1P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FCF1P2 Gene

Pathways & Interactions for FCF1P2 Gene

SuperPathways for FCF1P2 Gene

No Data Available

Interacting Proteins for FCF1P2 Gene

Gene Ontology (GO) - Biological Process for FCF1P2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FCF1P2 Gene

Transcripts for FCF1P2 Gene

mRNA/cDNA for FCF1P2 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FCF1P2 Gene

RRNA-processing protein FCF1 homolog:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FCF1P2 Gene

No ASD Table

Relevant External Links for FCF1P2 Gene

GeneLoc Exon Structure for
FCF1P2
ECgene alternative splicing isoforms for
FCF1P2

Expression for FCF1P2 Gene

mRNA expression in normal human tissues for FCF1P2 Gene

NURSA nuclear receptor signaling pathways regulating expression of FCF1P2 Gene:

FCF1P2

SOURCE GeneReport for Unigene cluster for FCF1P2 Gene:

Hs.670746
genes like me logo Genes that share expression patterns with FCF1P2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for FCF1P2 Gene

Orthologs for FCF1P2 Gene

Evolution for FCF1P2 Gene

ENSEMBL:
Gene Tree for FCF1P2 (if available)
TreeFam:
Gene Tree for FCF1P2 (if available)

No data available for Orthologs for FCF1P2 Gene

Paralogs for FCF1P2 Gene

No data available for Paralogs for FCF1P2 Gene

Variants for FCF1P2 Gene

Sequence variations from dbSNP and Humsavar for FCF1P2 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs112008705 -- 48,291,527(+) GCATG(C/T)ACCAC intron-variant, nc-transcript-variant, utr-variant-3-prime
rs112039650 -- 48,290,094(+) ATCTC(A/G)CTGTC intron-variant, downstream-variant-500B
rs112107331 -- 48,292,956(+) TTTCC(C/T)GGGCC intron-variant, upstream-variant-2KB, utr-variant-3-prime
rs112767595 -- 48,290,262(+) AAAAA(A/T)TTTTT intron-variant, downstream-variant-500B
rs113852790 -- 48,291,972(+) GTGTT(A/G)GCCAG intron-variant, upstream-variant-2KB, utr-variant-3-prime

Relevant External Links for FCF1P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FCF1P2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for FCF1P2 Gene

Disorders for FCF1P2 Gene

Relevant External Links for FCF1P2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FCF1P2

No disorders were found for FCF1P2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FCF1P2 Gene

Publications for FCF1P2 Gene

  1. Large-scale identification of human genes implicated in epidermal barrier function. (PMID: 17562024) Toulza E. … Guerrin M. (Genome Biol. 2007) 3 64

Products for FCF1P2 Gene

Sources for FCF1P2 Gene

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