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Aliases for FCF1P2 Gene

Subcategory (RNA class) for FCF1P2 Gene

lncRNA

Aliases for FCF1P2 Gene

  • FCF1 Pseudogene 2 2 3 5
  • FCF1 Small Subunit (SSU) Processome Component Homolog (S. Cerevisiae) Pseudogene 2 2

External Ids for FCF1P2 Gene

ORGUL Members for FCF1P2 Gene

Previous GeneCards Identifiers for FCF1P2 Gene

  • GC03M048333

Summaries for FCF1P2 Gene

GeneCards Summary for FCF1P2 Gene

FCF1P2 (FCF1 Pseudogene 2) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for FCF1P2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FCF1P2 Gene

Genomics for FCF1P2 Gene

Regulatory Elements for FCF1P2 Gene

Enhancers for FCF1P2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03H049016 1.4 ENCODE dbSUPER 49.6 -728.9 -728886 6 HDGF PKNOX1 ARNT ZFP64 ARID4B SIN3A FEZF1 ZNF2 ZBTB7B YY1 WDR6 ENSG00000235236 NICN1 FCF1P2 QRICH1 RBM6 ZNF589 ENSG00000223343 P4HTM AMT
GH03H048299 1.1 ENCODE 35.4 -10.1 -10073 3 HDGF PKNOX1 MLX ZFP64 ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF207 ZNF589 FCF1P2 ENSG00000235236 BOLA2P2 PTPN23 IP6K2 DHX30 QRICH1 ATRIP ENSG00000260236
GH03H047824 1.1 ENCODE 25.3 +466.1 466096 2 HDGF ARNT ARID4B SIN3A DMAP1 YY1 CBX5 ZNF207 ZNF143 DEK DHX30 FCF1P2 ZNF589 SETD2 PTPN23 MIR1226 MAP4 BOLA2P2 ELP6 ENSG00000260236
GH03H047778 1.4 Ensembl ENCODE 15 +510.6 510575 5 HDGF PKNOX1 MLX ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 SLC30A9 ZNF589 SETD2 PTPN23 DHX30 ATRIP BOLA2P2 SCAP IP6K2 CCDC12 NME6
GH03H047511 1.1 ENCODE 18.8 +778.5 778525 2 HDGF PKNOX1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF207 SETD2 NME6 FCF1P2 ZNF589 MRPS18AP1 PTPN23 ATRIP BOLA2P2 CCDC12 NBEAL2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FCF1P2 on UCSC Golden Path with GeneCards custom track

Genomic Location for FCF1P2 Gene

Chromosome:
3
Start:
48,290,279 bp from pter
End:
48,291,375 bp from pter
Size:
1,097 bases
Orientation:
Minus strand

Genomic View for FCF1P2 Gene

Genes around FCF1P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FCF1P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FCF1P2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FCF1P2 Gene

Proteins for FCF1P2 Gene

Post-translational modifications for FCF1P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FCF1P2 Gene

Domains & Families for FCF1P2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FCF1P2 Gene

Function for FCF1P2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FCF1P2 Gene

Localization for FCF1P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for FCF1P2 Gene

Pathways & Interactions for FCF1P2 Gene

SuperPathways for FCF1P2 Gene

No Data Available

Interacting Proteins for FCF1P2 Gene

Gene Ontology (GO) - Biological Process for FCF1P2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FCF1P2 Gene

Drugs & Compounds for FCF1P2 Gene

No Compound Related Data Available

Transcripts for FCF1P2 Gene

mRNA/cDNA for FCF1P2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for FCF1P2 Gene

No ASD Table

Relevant External Links for FCF1P2 Gene

GeneLoc Exon Structure for
FCF1P2
ECgene alternative splicing isoforms for
FCF1P2

Expression for FCF1P2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FCF1P2 Gene

NURSA nuclear receptor signaling pathways regulating expression of FCF1P2 Gene:

FCF1P2
genes like me logo Genes that share expression patterns with FCF1P2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FCF1P2 Gene

Orthologs for FCF1P2 Gene

Evolution for FCF1P2 Gene

ENSEMBL:
Gene Tree for FCF1P2 (if available)
TreeFam:
Gene Tree for FCF1P2 (if available)

No data available for Orthologs for FCF1P2 Gene

Paralogs for FCF1P2 Gene

No data available for Paralogs for FCF1P2 Gene

Variants for FCF1P2 Gene

Sequence variations from dbSNP and Humsavar for FCF1P2 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000716580 -- 48,291,977(+) AGCCA(A/G)GATGG intron-variant, upstream-variant-2KB, utr-variant-3-prime
rs1000832479 -- 48,292,281(+) CTATC(C/T)CTATA intron-variant, upstream-variant-2KB, utr-variant-3-prime
rs1001291746 -- 48,293,192(+) AGGCT(A/C)ACTTC intron-variant, upstream-variant-2KB, utr-variant-3-prime
rs1001575934 -- 48,293,666(+) CTTTA(C/T)ACCTC intron-variant, upstream-variant-2KB, utr-variant-3-prime
rs1001905738 -- 48,291,861(+) TCCTG(A/G)GTTCA intron-variant, upstream-variant-2KB, utr-variant-3-prime

Relevant External Links for FCF1P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FCF1P2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for FCF1P2 Gene

Disorders for FCF1P2 Gene

Relevant External Links for FCF1P2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FCF1P2

No disorders were found for FCF1P2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FCF1P2 Gene

Publications for FCF1P2 Gene

  1. Large-scale identification of human genes implicated in epidermal barrier function. (PMID: 17562024) Toulza E … Guerrin M (Genome biology 2007) 3 60

Products for FCF1P2 Gene

Sources for FCF1P2 Gene

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