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Aliases for FBXW9 Gene

Aliases for FBXW9 Gene

  • F-Box And WD Repeat Domain Containing 9 2 3 5
  • F-Box And WD-40 Domain-Containing Protein 9 3 4
  • F-Box And WD-40 Domain Protein 9 2 3
  • Fbw9 3 4
  • F-Box And WD-40 Repeat Containing Protein 9 3
  • Specificity Factor For SCF Ubiquitin Ligase 3

External Ids for FBXW9 Gene

Previous GeneCards Identifiers for FBXW9 Gene

  • GC19M012661
  • GC19M012662
  • GC19M012799
  • GC19M012372

Summaries for FBXW9 Gene

Entrez Gene Summary for FBXW9 Gene

  • Members of the F-box protein family, such as FBXW9, are characterized by an approximately 40-amino acid F-box motif. SCF complexes, formed by SKP1 (MIM 601434), cullin (see CUL1; MIM 603034), and F-box proteins, act as protein-ubiquitin ligases. F-box proteins interact with SKP1 through the F box, and they interact with ubiquitination targets through other protein interaction domains (Jin et al., 2004 [PubMed 15520277]).[supplied by OMIM, Mar 2008]

GeneCards Summary for FBXW9 Gene

FBXW9 (F-Box And WD Repeat Domain Containing 9) is a Protein Coding gene. Among its related pathways are Transport to the Golgi and subsequent modification and Chaperonin-mediated protein folding.

UniProtKB/Swiss-Prot for FBXW9 Gene

  • Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FBXW9 Gene

Genomics for FBXW9 Gene

Regulatory Elements for FBXW9 Gene

Promoters for FBXW9 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around FBXW9 on UCSC Golden Path with GeneCards custom track

Genomic Location for FBXW9 Gene

Chromosome:
19
Start:
12,688,053 bp from pter
End:
12,696,868 bp from pter
Size:
8,816 bases
Orientation:
Minus strand

Genomic View for FBXW9 Gene

Genes around FBXW9 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FBXW9 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FBXW9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FBXW9 Gene

Proteins for FBXW9 Gene

  • Protein details for FBXW9 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5XUX1-FBXW9_HUMAN
    Recommended name:
    F-box/WD repeat-containing protein 9
    Protein Accession:
    Q5XUX1
    Secondary Accessions:
    • B3KVP7
    • Q9BT89

    Protein attributes for FBXW9 Gene

    Size:
    488 amino acids
    Molecular mass:
    54115 Da
    Quaternary structure:
    • Interacts with SKP1 and CUL1.

    Alternative splice isoforms for FBXW9 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for FBXW9 Gene

Proteomics data for FBXW9 Gene at MOPED

Post-translational modifications for FBXW9 Gene

  • Ubiquitination at Lys 215
  • Modification sites at PhosphoSitePlus

Other Protein References for FBXW9 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for FBXW9 Gene

Domains & Families for FBXW9 Gene

Suggested Antigen Peptide Sequences for FBXW9 Gene

Graphical View of Domain Structure for InterPro Entry

Q5XUX1

UniProtKB/Swiss-Prot:

FBXW9_HUMAN :
  • Contains 1 F-box domain.
  • Contains 7 WD repeats.
Domain:
  • Contains 1 F-box domain.
Similarity:
  • Contains 7 WD repeats.
genes like me logo Genes that share domains with FBXW9: view

Function for FBXW9 Gene

Molecular function for FBXW9 Gene

UniProtKB/Swiss-Prot Function:
Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex.
genes like me logo Genes that share phenotypes with FBXW9: view

Animal Models for FBXW9 Gene

MGI Knock Outs for FBXW9:

Animal Model Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , miRNA , Transcription Factor Targets and HOMER Transcription for FBXW9 Gene

Localization for FBXW9 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for FBXW9 Gene COMPARTMENTS Subcellular localization image for FBXW9 gene
Compartment Confidence
cytosol 3
nucleus 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for FBXW9 Gene

Pathways & Interactions for FBXW9 Gene

genes like me logo Genes that share pathways with FBXW9: view

Gene Ontology (GO) - Biological Process for FBXW9 Gene

None

No data available for SIGNOR curated interactions for FBXW9 Gene

Drugs & Compounds for FBXW9 Gene

No Compound Related Data Available

Transcripts for FBXW9 Gene

Unigene Clusters for FBXW9 Gene

F-box and WD repeat domain containing 9:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FBXW9 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b · 6c ^ 7a · 7b ^ 8a · 8b ^ 9 ^ 10a · 10b
SP1: -
SP2: -
SP3: - -
SP4: - -

Relevant External Links for FBXW9 Gene

GeneLoc Exon Structure for
FBXW9
ECgene alternative splicing isoforms for
FBXW9

Expression for FBXW9 Gene

mRNA expression in normal human tissues for FBXW9 Gene

Protein differential expression in normal tissues from HIPED for FBXW9 Gene

This gene is overexpressed in Fetal Brain (23.9), Ovary (9.9), Tonsil (9.1), Frontal cortex (8.3), and Testis (7.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for FBXW9 Gene



SOURCE GeneReport for Unigene cluster for FBXW9 Gene Hs.515154

genes like me logo Genes that share expression patterns with FBXW9: view

Protein tissue co-expression partners for FBXW9 Gene

- Elite partner

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for FBXW9 Gene

Orthologs for FBXW9 Gene

This gene was present in the common ancestor of animals.

Orthologs for FBXW9 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia FBXW9 35
  • 98.84 (n)
  • 98.47 (a)
FBXW9 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia FBXW9 36
  • 82 (a)
OneToOne
FBXW9 35
  • 85.08 (n)
  • 81.44 (a)
dog
(Canis familiaris)
Mammalia FBXW9 35
  • 85.08 (n)
  • 82.31 (a)
FBXW9 36
  • 82 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Fbxw9 16
Fbxw9 35
  • 80.2 (n)
  • 77.51 (a)
Fbxw9 36
  • 78 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia FBXW9 36
  • 63 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia FBXW9 36
  • 58 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Fbxw9 35
  • 80.06 (n)
  • 77.73 (a)
lizard
(Anolis carolinensis)
Reptilia FBXW9 36
  • 56 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia fbxw9 35
  • 60.29 (n)
  • 56.68 (a)
Str.10743 35
zebrafish
(Danio rerio)
Actinopterygii fbxw9 35
  • 58.48 (n)
  • 47.75 (a)
fbxw9 36
  • 36 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea mec-15 36
  • 25 (a)
OneToOne
mec-15 35
  • 41.75 (n)
  • 31.74 (a)
Species with no ortholog for FBXW9:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for FBXW9 Gene

ENSEMBL:
Gene Tree for FBXW9 (if available)
TreeFam:
Gene Tree for FBXW9 (if available)

Paralogs for FBXW9 Gene

No data available for Paralogs for FBXW9 Gene

Variants for FBXW9 Gene

Sequence variations from dbSNP and Humsavar for FBXW9 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs6511833 - 12,696,373(+) AAACC(C/T)TGGAC reference, missense, utr-variant-5-prime
rs10424623 - 12,694,617(+) CTTAG(C/T)GCCTA reference, missense
rs3786714 -- 12,697,170(-) AAAAA(A/G)AAAAA upstream-variant-2KB
rs7246917 -- 12,692,100(+) tgtca(C/T)ccagg intron-variant
rs6511832 -- 12,696,252(+) TCGCG(C/G)AGCGC reference, synonymous-codon, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for FBXW9 Gene

Variant ID Type Subtype PubMed ID
dgv3733n71 CNV Loss 21882294
nsv911077 CNV Loss 21882294

Variation tolerance for FBXW9 Gene

Residual Variation Intolerance Score: 61.6% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 6.96; 79.88% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for FBXW9 Gene

HapMap Linkage Disequilibrium report
FBXW9

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FBXW9 Gene

Disorders for FBXW9 Gene

Relevant External Links for FBXW9

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FBXW9

No disorders were found for FBXW9 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FBXW9 Gene

Publications for FBXW9 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 67
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  3. Interactions of pathological hallmark proteins: tubulin polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PMID: 21832049) OlA!h J. … OvA!di J. (J. Biol. Chem. 2011) 3
  4. Dynamics of cullin-RING ubiquitin ligase network revealed by systematic quantitative proteomics. (PMID: 21145461) Bennett E.J. … Harper J.W. (Cell 2010) 3
  5. Defining the human deubiquitinating enzyme interaction landscape. (PMID: 19615732) Sowa M.E. … Harper J.W. (Cell 2009) 3

Products for FBXW9 Gene

Sources for FBXW9 Gene

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