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Aliases for FBXW9 Gene

Aliases for FBXW9 Gene

  • F-Box And WD Repeat Domain Containing 9 2 3
  • Fbw9 3 4 6
  • F-Box And WD-40 Domain-Containing Protein 9 3 4
  • F-Box And WD-40 Domain Protein 9 2 3
  • F-Box And WD-40 Repeat Containing Protein 9 3
  • Specificity Factor For SCF Ubiquitin Ligase 3
  • F-Box/WD Repeat-Containing Protein 9 3

External Ids for FBXW9 Gene

Previous GeneCards Identifiers for FBXW9 Gene

  • GC19M012661
  • GC19M012662
  • GC19M012799
  • GC19M012372

Summaries for FBXW9 Gene

Entrez Gene Summary for FBXW9 Gene

  • Members of the F-box protein family, such as FBXW9, are characterized by an approximately 40-amino acid F-box motif. SCF complexes, formed by SKP1 (MIM 601434), cullin (see CUL1; MIM 603034), and F-box proteins, act as protein-ubiquitin ligases. F-box proteins interact with SKP1 through the F box, and they interact with ubiquitination targets through other protein interaction domains (Jin et al., 2004 [PubMed 15520277]).[supplied by OMIM, Mar 2008]

GeneCards Summary for FBXW9 Gene

FBXW9 (F-Box And WD Repeat Domain Containing 9) is a Protein Coding gene. Diseases associated with FBXW9 include mucoepidermoid carcinoma. Among its related pathways are Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein and Protein folding.

UniProtKB/Swiss-Prot for FBXW9 Gene

  • Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FBXW9 Gene

Genomics for FBXW9 Gene

Regulatory Elements for FBXW9 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for FBXW9 Gene

12,688,053 bp from pter
12,696,775 bp from pter
8,723 bases
Minus strand

Genomic View for FBXW9 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FBXW9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FBXW9 Gene

Proteins for FBXW9 Gene

  • Protein details for FBXW9 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    F-box/WD repeat-containing protein 9
    Protein Accession:
    Secondary Accessions:
    • B3KVP7
    • Q9BT89

    Protein attributes for FBXW9 Gene

    488 amino acids
    Molecular mass:
    54115 Da
    Quaternary structure:
    • Interacts with SKP1 and CUL1.

    Alternative splice isoforms for FBXW9 Gene


neXtProt entry for FBXW9 Gene

Proteomics data for FBXW9 Gene at MOPED

Post-translational modifications for FBXW9 Gene

  • Ubiquitination at Lys215
  • Modification sites at PhosphoSitePlus

Other Protein References for FBXW9 Gene

ENSEMBL proteins:
Reactome Protein details:
REFSEQ proteins:

Antibody Products

No data available for DME Specific Peptides for FBXW9 Gene

Domains for FBXW9 Gene

Suggested Antigen Peptide Sequences for FBXW9 Gene

Graphical View of Domain Structure for InterPro Entry



  • Contains 1 F-box domain.
  • Contains 7 WD repeats.
  • Contains 1 F-box domain.
  • Contains 7 WD repeats.
genes like me logo Genes that share domains with FBXW9: view

Function for FBXW9 Gene

Molecular function for FBXW9 Gene

UniProtKB/Swiss-Prot Function:
Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex.

Gene Ontology (GO) - Molecular Function for FBXW9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 19159283
genes like me logo Genes that share ontologies with FBXW9: view

Phenotypes for FBXW9 Gene

GenomeRNAi human phenotypes for FBXW9:
genes like me logo Genes that share phenotypes with FBXW9: view

Animal Model Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for FBXW9

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for FBXW9 Gene

Localization for FBXW9 Gene

Subcellular locations from

Jensen Localization Image for FBXW9 Gene COMPARTMENTS Subcellular localization image for FBXW9 gene
Compartment Confidence
cytosol 2
nucleus 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for FBXW9 Gene

Pathways for FBXW9 Gene

genes like me logo Genes that share pathways with FBXW9: view

PCR Array Products

  • Pathway & Disease-focused RT² Profiler PCR Arrays
    • Ubiquitination (Ubiquitylation) Pathway in human,mouse,rat
    • Ubiquitin Ligases in human,mouse,rat

Gene Ontology (GO) - Biological Process for FBXW9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process IBA --
genes like me logo Genes that share ontologies with FBXW9: view

Transcripts for FBXW9 Gene

mRNA/cDNA for FBXW9 Gene

Unigene Clusters for FBXW9 Gene

F-box and WD repeat domain containing 9:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for FBXW9

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for FBXW9 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b · 6c ^ 7a · 7b ^ 8a · 8b ^ 9 ^ 10a · 10b
SP1: -
SP2: -
SP3: - -
SP4: - -

Relevant External Links for FBXW9 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for FBXW9 Gene

mRNA expression in normal human tissues for FBXW9 Gene

Protein differential expression in normal tissues for FBXW9 Gene

This gene is overexpressed in Fetal Brain (23.9), Ovary (9.9), Tonsil (9.1), Frontal cortex (8.3), and Testis (7.9).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for FBXW9 Gene

SOURCE GeneReport for Unigene cluster for FBXW9 Gene Hs.515154

genes like me logo Genes that share expressions with FBXW9: view

Expression partners for FBXW9 Gene

* - Elite partner

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for FBXW9 Gene

Orthologs for FBXW9 Gene

This gene was present in the common ancestor of animals.

Orthologs for FBXW9 Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia FBXW9 35
  • 85.08 (n)
  • 81.44 (a)
FBXW9 36
  • 82 (a)
(Canis familiaris)
Mammalia FBXW9 35
  • 85.08 (n)
  • 82.31 (a)
FBXW9 36
  • 82 (a)
(Mus musculus)
Mammalia Fbxw9 35
  • 80.2 (n)
  • 77.51 (a)
Fbxw9 16
Fbxw9 36
  • 78 (a)
(Pan troglodytes)
Mammalia FBXW9 35
  • 98.84 (n)
  • 98.47 (a)
FBXW9 36
  • 99 (a)
(Rattus norvegicus)
Mammalia Fbxw9 35
  • 80.06 (n)
  • 77.73 (a)
(Monodelphis domestica)
Mammalia FBXW9 36
  • 63 (a)
(Ornithorhynchus anatinus)
Mammalia FBXW9 36
  • 58 (a)
(Anolis carolinensis)
Reptilia FBXW9 36
  • 56 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia fbxw9 35
  • 60.29 (n)
  • 56.68 (a)
Str.10743 35
(Danio rerio)
Actinopterygii fbxw9 35
  • 58.48 (n)
  • 47.75 (a)
fbxw9 36
  • 36 (a)
(Caenorhabditis elegans)
Secernentea mec-15 35
  • 41.75 (n)
  • 31.74 (a)
mec-15 36
  • 25 (a)
Species with no ortholog for FBXW9:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for FBXW9 Gene

Gene Tree for FBXW9 (if available)
Gene Tree for FBXW9 (if available)

Paralogs for FBXW9 Gene

No data available for Paralogs for FBXW9 Gene

Variants for FBXW9 Gene

Sequence variations from dbSNP and Humsavar for FBXW9 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs3786714 -- 12,697,170(-) AAAAA(A/G)AAAAA upstream-variant-2KB
rs4468743 -- 12,693,190(+) aagct(C/T)tcagc intron-variant
rs6511832 -- 12,696,252(+) TCGCG(C/G)AGCGC reference, synonymous-codon, utr-variant-5-prime
rs6511833 - 12,696,373(+) AAACC(C/T)TGGAC missense, reference, utr-variant-5-prime
rs7246726 -- 12,692,505(+) acagg(C/T)gtgag intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FBXW9 Gene

Variant ID Type Subtype PubMed ID
dgv3733n71 CNV Loss 21882294
nsv911077 CNV Loss 21882294

Relevant External Links for FBXW9 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FBXW9 Gene

Disorders for FBXW9 Gene

MalaCards: The human disease database

MalaCards: The human disease database.

Search for FBXW9 Gene in MalaCards »

(1) Disease for FBXW9 Gene

(1) University of Copenhagen DISEASES for FBXW9 Gene

genes like me logo Genes that share disorders with FBXW9: view

No data available for OMIM , UniProtKB/Swiss-Prot , Novoseek inferred disease relationships , Genatlas and External Links for FBXW9 Gene

Publications for FBXW9 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. Systematic analysis and nomenclature of mammalian F-box proteins. (PMID: 15520277) Jin J. … Harper J.W. (Genes Dev. 2004) 3 4
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  5. Array MAPPIT: high-throughput interactome analysis in mammalian cells. (PMID: 19159283) Lievens S. … Tavernier J. (J. Proteome Res. 2009) 3

Products for FBXW9 Gene

Sources for FBXW9 Gene

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