Free for academic non-profit institutions. Other users need a Commercial license

FBXW4P1 Gene(Pseudogene)

F-Box And WD Repeat Domain Containing 4 Pseudogene 1

GCID:
GC22P023328
GIFtS:
24
Genes Participants
UDN Logo

Aliases for FBXW4P1 Gene

Aliases for FBXW4P1 Gene

  • F-Box And WD Repeat Domain Containing 4 Pseudogene 1 2 3 5
  • Split Hand/Foot Malformation (Ectrodactyly) Type 3 Pseudogene 1 2 3
  • F-Box And WD-40 Domain Protein 3 2 3
  • SHFM3P1 3
  • FBXW3 3
  • FBW3 3

External Ids for FBXW4P1 Gene

Previous HGNC Symbols for FBXW4P1 Gene

  • FBXW3
  • SHFM3P1

Previous GeneCards Identifiers for FBXW4P1 Gene

  • GC22P021934
  • GC22P023604
  • GC22P006572

Summaries for FBXW4P1 Gene

GeneCards Summary for FBXW4P1 Gene

FBXW4P1 (F-Box And WD Repeat Domain Containing 4 Pseudogene 1) is a Pseudogene. Diseases associated with FBXW4P1 include Split Hand Foot Malformation.

Gene Wiki entry for FBXW4P1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FBXW4P1 Gene

Genomics for FBXW4P1 Gene

Products:

  1. Regulatory Element

Regulatory Elements for FBXW4P1 Gene

Enhancers for FBXW4P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH22G023249 1.4 Ensembl ENCODE dbSUPER 22.8 -11.8 -11795 3.0 ZSCAN4 INSM2 KLF17 BRCA1 RAD21 ZNF366 SCRT2 FOS CREM CEBPB FBXW4P1 RAB36 RN7SL263P BCRP8
GH22G023240 1.3 Ensembl ENCODE dbSUPER 21.1 -19.4 -19387 5.8 BMI1 RAD21 GLIS2 GATA2 ZNF548 FOS CBFB JUNB USF2 RAD51 FBXW4P1 RAB36 ZNF70 RSPH14 IGLV5-52 ENSG00000272779 CABIN1 RN7SL263P BCRP8
GH22G023278 1.8 FANTOM5 Ensembl ENCODE dbSUPER 13.5 +18.3 18279 5.8 HDGF PKNOX1 ATF1 CREB3L1 ARNT ARID4B ZNF2 ZNF48 GLIS2 ZNF143 ZNF70 RAB36 FBXW4P1 RSPH14 IGLV5-52 ENSG00000272779 BCR PIR39869 GC22P023344
GH22G023251 0.8 dbSUPER 21.2 -15.4 -15413 1.2 ELF3 FOXA2 ARID4B ZNF48 RARA ZNF263 SP5 ZHX2 KAT8 RCOR2 FBXW4P1 RAB36 RSPH14 RN7SL263P BCRP8
GH22G023255 0.8 dbSUPER 21.2 -15.5 -15486 1.0 ELF3 FOXA2 ARID4B ZNF48 RARA ZNF263 SP5 ZHX2 KAT8 RCOR2 FBXW4P1 RAB36 RSPH14 RN7SL263P BCRP8
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FBXW4P1 on UCSC Golden Path with GeneCards custom track

Genomic Location for FBXW4P1 Gene

Chromosome:
22
Start:
23,262,767 bp from pter
End:
23,265,005 bp from pter
Size:
2,239 bases
Orientation:
Plus strand

Genomic View for FBXW4P1 Gene

Genes around FBXW4P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FBXW4P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FBXW4P1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for FBXW4P1 Gene

Proteins for FBXW4P1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for FBXW4P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FBXW4P1 Gene

Domains & Families for FBXW4P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FBXW4P1 Gene

Function for FBXW4P1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry
genes like me logo Genes that share phenotypes with FBXW4P1: view

Inhibitory RNA Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FBXW4P1 Gene

Localization for FBXW4P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FBXW4P1 Gene

Pathways & Interactions for FBXW4P1 Gene

SuperPathways for FBXW4P1 Gene

PathCards logo More details on SuperPathways for FBXW4P1
No Data Available

Interacting Proteins for FBXW4P1 Gene

Gene Ontology (GO) - Biological Process for FBXW4P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FBXW4P1 Gene

Drugs & Compounds for FBXW4P1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for FBXW4P1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for FBXW4P1 Gene

(4) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for FBXW4P1 Gene

F-box and WD repeat domain containing 4 pseudogene 1:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for FBXW4P1 Gene

No ASD Table

Relevant External Links for FBXW4P1 Gene

GeneLoc Exon Structure for
FBXW4P1
ECgene alternative splicing isoforms for
FBXW4P1

Expression for FBXW4P1 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FBXW4P1 Gene

mRNA expression in normal human tissues for FBXW4P1 Gene
mRNA expression by BioGPS for FBXW4P1 GenemRNA expression by GTEx for FBXW4P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of FBXW4P1 Gene:

FBXW4P1

SOURCE GeneReport for Unigene cluster for FBXW4P1 Gene:

Hs.729589
genes like me logo Genes that share expression patterns with FBXW4P1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FBXW4P1 Gene

Orthologs for FBXW4P1 Gene

Evolution for FBXW4P1 Gene

ENSEMBL:
Gene Tree for FBXW4P1 (if available)
TreeFam:
Gene Tree for FBXW4P1 (if available)

No data available for Orthologs for FBXW4P1 Gene

Paralogs for FBXW4P1 Gene

No data available for Paralogs for FBXW4P1 Gene

Variants for FBXW4P1 Gene

Sequence variations from dbSNP and Humsavar for FBXW4P1 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type
rs1000629102 -- 23,263,611(+) AGGAC(A/G)TTTGC intron-variant, nc-transcript-variant
rs1000673960 -- 23,264,024(+) TATAT(A/G)AGTCC intron-variant, nc-transcript-variant
rs1001275519 -- 23,264,996(+) AAAAA(A/G)GAAAA intron-variant, nc-transcript-variant
rs1001724536 -- 23,262,955(+) GAAGG(A/G)GCGAG intron-variant, nc-transcript-variant
rs1003730835 -- 23,261,002(+) GTCGG(A/G)AATCC upstream-variant-2KB, reference, missense

Structural Variations from Database of Genomic Variants (DGV) for FBXW4P1 Gene

Variant ID Type Subtype PubMed ID
esv2762117 CNV gain 21179565
esv3647392 CNV gain 21293372
esv3647395 CNV gain 21293372
esv3893457 CNV gain 25118596
nsv1059951 CNV gain 25217958
nsv1061433 CNV gain+loss 25217958
nsv1066891 CNV gain 25217958
nsv521695 CNV loss 19592680
nsv588512 CNV loss 21841781
nsv588598 CNV loss 21841781
nsv7350 OTHER inversion 18451855
nsv9876 CNV gain+loss 18304495

Relevant External Links for FBXW4P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FBXW4P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FBXW4P1 Gene

Disorders for FBXW4P1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for FBXW4P1 Gene - From: GeneCards

Disorder Aliases PubMed IDs
split hand foot malformation
  • ectrodactyly
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for FBXW4P1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FBXW4P1
genes like me logo Genes that share disorders with FBXW4P1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for FBXW4P1 Gene

Publications for FBXW4P1 Gene

  1. Identification of a family of human F-box proteins. (PMID: 10531035) Cenciarelli C. … Pagano M. (Curr. Biol. 1999) 2 3 64
  2. A family of mammalian F-box proteins. (PMID: 10531037) Winston J.T. … Harper J.W. (Curr. Biol. 1999) 2 3 64
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  4. M-phase kinases induce phospho-dependent ubiquitination of somatic Wee1 by SCFbeta-TrCP. (PMID: 15070733) Watanabe N. … Osada H. (Proc. Natl. Acad. Sci. U.S.A. 2004) 3 64
  5. A novel human gene encoding an F-box/WD40 containing protein maps in the SHFM3 critical region on 10q24. (PMID: 10405324) Ianakiev P. … Tsipouras P. (Biochem. Biophys. Res. Commun. 1999) 3 64

Products for FBXW4P1 Gene

Sources for FBXW4P1 Gene

Content
Loading form....