Aliases for FBXW10 Gene
Aliases for FBXW10 Gene
External Ids for FBXW10 Gene
- HGNC: 1211
- Entrez Gene: 10517
- Ensembl: ENSG00000171931
- OMIM: 611679
- UniProtKB: Q5XX13
Previous HGNC Symbols for FBXW10 Gene
- C17orf1
- C17orf1A
Previous GeneCards Identifiers for FBXW10 Gene
- GC17P018589
- GC17P018647
- GC17P018230
- GC17P018747
Summaries for FBXW10 Gene
-
Members of the F-box protein family, such as FBXW10, are characterized by an approximately 40-amino acid F-box motif. SCF complexes, formed by SKP1 (MIM 601434), cullin (see CUL1; MIM 603134), and F-box proteins, act as protein-ubiquitin ligases. F-box proteins interact with SKP1 through the F box, and they interact with ubiquitination targets through other protein interaction domains (Jin et al., 2004 [PubMed 15520277]).[supplied by OMIM, Mar 2008]
GeneCards Summary for FBXW10 Gene
FBXW10 (F-Box And WD Repeat Domain Containing 10) is a Protein Coding gene. Diseases associated with FBXW10 include Hereditary Neuropathies. Among its related pathways are Chaperonin-mediated protein folding and Innate Immune System. An important paralog of this gene is CDRT1.
UniProtKB/Swiss-Prot for FBXW10 Gene
-
Probable substrate-recognition component of a SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Overexpression is leading to degradation of CBX5 and CBX1.
No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FBXW10 Gene
Genomics for FBXW10 Gene
Regulatory Elements for FBXW10 Gene
Enhancers for FBXW10 Gene
| GeneHancer Identifier | Enhancer Score | Enhancer Sources | Gene-Enhancer Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites within enhancer | Gene Targets for Enhancer |
|---|---|---|---|---|---|---|---|---|
| GH17G018697 | 0.9 | ENCODE | 8.7 | -42.2 | -42237 | 1.1 | HDAC1 ZNF133 ARID4B ZNF76 SIN3A DMAP1 ZNF2 ZBTB40 SCRT2 ZNF143 | TRIM16L FBXW10 ENSG00000264885 ZNF286B |
| GH17G018744 | 0.7 | ENCODE | 8.7 | +5.5 | 5547 | 3.3 | GATAD2A TFE3 FOXA2 SAP130 FOXA3 ZFP64 CHD7 RARA RAD51 NR2F6 | TVP23B FBXW10 SHMT1 SMCR8 |
| GH17G018740 | 0.4 | dbSUPER | 11.6 | +1.2 | 1236 | 1.0 | MNT | TVP23B FBXW10 |
| GH17G018732 | 0.5 | dbSUPER | 5.1 | -6.9 | -6904 | 1.8 | CTCF NFIC NR3C1 | FBXW10 ENSG00000265693 |
| GH17G018339 | 0.4 | FANTOM5 | 1.8 | -400.8 | -400775 | 0.1 | POLR2A | SHMT1 FBXW10 MIR6778 GC17M018331 |
- Elite enhancer and/or Elite enhancer-gene association
Download GeneHancer data dump
Enhancers around FBXW10 on UCSC Golden Path with GeneCards custom track
- Transcription factor binding sites by QIAGEN in the FBXW10 gene promoter:
Regulatory Element Products
Genomic Location for FBXW10 Gene
- Chromosome:
- 17
- Start:
- 18,740,223 bp from pter
- End:
- 18,779,349 bp from pter
- Size:
- 39,127 bases
- Orientation:
- Plus strand
Genomic View for FBXW10 Gene
Genes around FBXW10 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 17p11.2 by Ensembl
- 17p11.2 by Entrez Gene
- 17p11.2 by HGNC
FBXW10 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for FBXW10 Gene
Proteins for FBXW10 Gene
-
Protein details for FBXW10 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q5XX13-FBW10_HUMAN
- Recommended name:
- F-box/WD repeat-containing protein 10
- Protein Accession:
- Q5XX13
- C9JRY8
- C9JZD7
- Q8TC00
- Q9H0F0
Protein attributes for FBXW10 Gene
- Size:
- 1052 amino acids
- Molecular mass:
- 119846 Da
- Quaternary structure:
- No Data Available
Protein Expression for FBXW10 Gene
Post-translational modifications for FBXW10 Gene
Other Protein References for FBXW10 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
- Novus Biologicals Antibodies for FBXW10
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- GeneTex FBXW10 antibody for FBXW10
Protein Products
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Assay Products
- antibodies-online Kits for FBXW10: See all 15
No data available for DME Specific Peptides for FBXW10 Gene
Domains & Families for FBXW10 Gene
Gene Families for FBXW10 Gene
Protein Domains for FBXW10 Gene
- InterPro:
- ProtoNet:
Suggested Antigen Peptide Sequences for FBXW10 Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
No data available for UniProtKB/Swiss-Prot for FBXW10 Gene
Function for FBXW10 Gene
Molecular function for FBXW10 Gene
- UniProtKB/Swiss-Prot Function:
- Probable substrate-recognition component of a SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Overexpression is leading to degradation of CBX5 and CBX1.
- UniProtKB/Swiss-Prot Induction:
- By disease-causing laminin A mutants also inducing CBX5 and CBX1 proteasomal degradation.
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0004842 | ubiquitin-protein transferase activity | TAS | -- |
Phenotypes for FBXW10 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
-
ViGene Biosciences lentiviral particle packaged cDNA for FBXW10 gene
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CRISPR Products
-
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-
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miRNA Products
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Inhibitory RNA Products
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Cell Line Products
-
Horizon Cell Lines for FBXW10
-
ViGene Biosciences adenoviral particle packaged cDNA for FBXW10 gene
-
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Flow Cytometry Products
No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FBXW10 Gene
Localization for FBXW10 Gene
| Compartment | Confidence |
|---|---|
| cytosol | 5 |
| nucleus | 2 |
| mitochondrion | 1 |
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005829 | cytosol | TAS | -- |
No data available for Subcellular locations from UniProtKB/Swiss-Prot for FBXW10 Gene
Pathways & Interactions for FBXW10 Gene
| SuperPathway | Contained pathways | ||
|---|---|---|---|
| 1 | Class I MHC mediated antigen processing and presentation | ||
| 2 | Chaperonin-mediated protein folding |
.94
|
|
| 3 | Innate Immune System |
.61
|
|
| 4 | Metabolism of proteins | ||
Pathways by source for FBXW10 Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0000209 | protein polyubiquitination | TAS | -- |
| GO:0043687 | post-translational protein modification | TAS | -- |
No data available for SIGNOR curated interactions for FBXW10 Gene
Transcripts for FBXW10 Gene
mRNA/cDNA for FBXW10 Gene
- (7) REFSEQ mRNAs :
- (4) Additional mRNA sequences :
- (24) Selected AceView cDNA sequences:
- (5) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for FBXW10 Gene
CRISPR Products
-
OriGene CRISPR knockouts for FBXW10
-
Santa Cruz Biotechnology (SCBT) CRISPR for FBXW10
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miRNA Products
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Inhibitory RNA Products
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Flow Cytometry Products
Expression for FBXW10 Gene
mRNA expression in embryonic tissues and stem cells from LifeMap Discovery
-
Epiblast (Early Embryonic Tissues)
- Epiblast Cells Epiblast
-
Testis (Reproductive System)
mRNA differential expression in normal tissues according to GTEx for FBXW10 Gene
This gene is overexpressed in Testis (x19.8).
This gene is overexpressed in NK cells (43.8), Breast (15.1), and Spinal cord (7.2).
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for FBXW10 Gene
NURSA nuclear receptor signaling pathways regulating expression of FBXW10 Gene:
FBXW10SOURCE GeneReport for Unigene cluster for FBXW10 Gene:
Hs.592128Primer Products
-
OriGene qPCR primer pairs for FBXW10
No data available for mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FBXW10 Gene
Orthologs for FBXW10 Gene
This gene was present in the common ancestor of animals and fungi.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | FBXW10 35 |
|
OneToOne | |
| dog (Canis familiaris) |
Mammalia | FBXW10 34 |
|
||
| -- 35 |
|
OneToMany | |||
| -- 35 |
|
OneToMany | |||
| mouse (Mus musculus) |
Mammalia | Fbxw10 34 16 35 |
|
||
| rat (Rattus norvegicus) |
Mammalia | Fbxw10 34 |
|
||
| cow (Bos Taurus) |
Mammalia | FBXW10 34 |
|
||
| oppossum (Monodelphis domestica) |
Mammalia | -- 35 |
|
OneToMany | |
| platypus (Ornithorhynchus anatinus) |
Mammalia | -- 35 |
|
OneToMany | |
| chicken (Gallus gallus) |
Aves | -- 35 |
|
OneToMany | |
| lizard (Anolis carolinensis) |
Reptilia | -- 35 |
|
OneToMany | |
| tropical clawed frog (Silurana tropicalis) |
Amphibia | fbxw10 34 |
|
||
| zebrafish (Danio rerio) |
Actinopterygii | LOC563998 34 |
|
||
| fbxw10 35 |
|
OneToMany | |||
| baker's yeast (Saccharomyces cerevisiae) |
Saccharomycetes | PRP46 35 |
|
OneToMany | |
| sea squirt (Ciona savignyi) |
Ascidiacea | CSA.2090 35 |
|
OneToMany |
- Species where no ortholog for FBXW10 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- fruit fly (Drosophila melanogaster)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rainbow trout (Oncorhynchus mykiss)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
Paralogs for FBXW10 Gene
Variants for FBXW10 Gene
| SNP ID | Clin | Chr 17 pos | Sequence Context | AA Info | Type |
|---|---|---|---|---|---|
| rs1000431941 | -- | 18,774,884(+) | CAACA(C/T)AAAGA | intron-variant | |
| rs1000438979 | -- | 18,763,791(+) | GCTCT(C/T)GTTTG | intron-variant | |
| rs1000731650 | -- | 18,750,197(+) | TGAGG(C/G)TGATA | intron-variant | |
| rs1000781304 | -- | 18,776,757(+) | CTTGT(A/G)TAAGT | intron-variant | |
| rs1000891275 | -- | 18,768,820(+) | TCTTC(C/T)ACCTG | intron-variant |
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| dgv564e214 | CNV | gain | 21293372 |
| nsv1055999 | CNV | gain | 25217958 |
| nsv1057803 | CNV | loss | 25217958 |
| nsv1063354 | CNV | gain | 25217958 |
| nsv1123098 | CNV | deletion | 24896259 |
| nsv1131302 | CNV | deletion | 24896259 |
| nsv499818 | OTHER | inversion | 21111241 |
| nsv523721 | CNV | gain | 19592680 |
| nsv833389 | CNV | gain | 17160897 |
| nsv9504 | CNV | gain+loss | 18304495 |
| nsv960431 | CNV | duplication | 23825009 |
| nsv962279 | CNV | duplication | 23825009 |
Residual Variation Intolerance Score:
96.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score:
16.06;
97.53% of all genes are more intolerant (likely to be disease-causing)
Relevant External Links for FBXW10 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- FBXW10
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FBXW10 Gene
Disorders for FBXW10 Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| hereditary neuropathies |
|
|
Search FBXW10 in MalaCards
View complete list of genes associated with diseases
Relevant External Links for FBXW10
- Atlas of Genetics and Cytogenetics in Oncology and Haematology:
- FBXW10
No data available for UniProtKB/Swiss-Prot and Genatlas for FBXW10 Gene
Publications for FBXW10 Gene
- Lamin A rod domain mutants target heterochromatin protein 1alpha and beta for proteasomal degradation by activation of F-box protein, FBXW10. (PMID: 20498703) Chaturvedi P. … Parnaik V.K. (PLoS ONE 2010) 3 4 64
- Systematic analysis and nomenclature of mammalian F-box proteins. (PMID: 15520277) Jin J. … Harper J.W. (Genes Dev. 2004) 3 4 64
- Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PMID: 11230166) Wiemann S. … Poustka A. (Genome Res. 2001) 3 4 64
- A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning. (PMID: 26673895) KA+rlA+ K. … GAPrlich D. (Elife 2015) 3 64
- FBXW10 is negatively regulated in transcription and expression level by protein O-GlcNAcylation. (PMID: 23899520) Feng Z. … Lianwen Z. (Biochem. Biophys. Res. Commun. 2013) 3 64
Products for FBXW10 Gene
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- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for FBXW10 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
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- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
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- (18) KEGG
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- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
- (83) fRNAdb
- (84) DISEASES
- (85) SIMAP
- (86) GenomeRNAi
- (87) LifeMap
- (88) miRTarBase
- (89) MalaCards
- (90) Invitrogen
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- (98) BioGPS
- (99) Illumina
- (100) COMPARTMENTS
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- (103) ApexBio
- (104) Addgene
- (105) antibodies-online
- (106) CYP
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- (108) SwitchGear Genomics
- (109) TreeFam
- (110) PathCards
- (111) GeneReviews
- (112) GeneTex
- (113) Taconic Biosciences
- (114) GTEx
- (115) ProteomicsDB
- (116) SCBT
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- (141) ENCODE
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- (146) Cyagen
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- (151) CIViC
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- (153) dbSUPER
- (154) TISSUES
- (155) Gene ORGANizer