Aliases for FBXO9 Gene
Aliases for FBXO9 Gene
External Ids for FBXO9 Gene
- HGNC: 13588
- Entrez Gene: 26268
- Ensembl: ENSG00000112146
- OMIM: 609091
- UniProtKB: Q9UK97
Previous GeneCards Identifiers for FBXO9 Gene
- GC06P052931
- GC06P052976
- GC06P052916
- GC06P052761
Summaries for FBXO9 Gene
-
This gene encodes a member of the F-box protein family which is characterized by an approximately 40 amino acid motif, the F-box. The F-box proteins constitute one of the four subunits of the ubiquitin protein ligase complex called SCFs (SKP1-cullin-F-box), which function in phosphorylation-dependent ubiquitination. The F-box proteins are divided into 3 classes: Fbws containing WD-40 domains, Fbls containing leucine-rich repeats, and Fbxs containing either different protein-protein interaction modules or no recognizable motifs. The protein encoded by this gene belongs to the Fbxs class. Alternative splicing of this gene generates at least 3 transcript variants diverging at the 5' terminus. [provided by RefSeq, Jul 2008]
GeneCards Summary for FBXO9 Gene
FBXO9 (F-Box Protein 9) is a Protein Coding gene. Diseases associated with FBXO9 include Multiple Myeloma and Epilepsy, Generalized, With Febrile Seizures Plus, Type 5. Among its related pathways are Innate Immune System and Class I MHC mediated antigen processing and presentation. GO annotations related to this gene include ubiquitin-protein transferase activity.
UniProtKB/Swiss-Prot for FBXO9 Gene
-
Substrate recognition component of a SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of TTI1 and TELO2 in a CK2-dependent manner, thereby directly regulating mTOR signaling. SCF(FBXO9) recognizes and binds mTORC1-bound TTI1 and TELO2 when they are phosphorylated by CK2 following growth factor deprivation, leading to their degradation. In contrast, the SCF(FBXO9) does not mediate ubiquitination of TTI1 and TELO2 when they are part of the mTORC2 complex. As a consequence, mTORC1 is inactivated to restrain cell growth and protein translation, while mTORC2 is activated due to the relief of feedback inhibition by mTORC1.
No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FBXO9 Gene
Genomics for FBXO9 Gene
Regulatory Elements for FBXO9 Gene
Enhancers for FBXO9 Gene
| GeneHancer Identifier | Enhancer Score | Enhancer Sources | Gene-Enhancer Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites within enhancer | Gene Targets for Enhancer |
|---|---|---|---|---|---|---|---|---|
| GH06G053009 | 1.1 | ENCODE dbSUPER | 11.2 | -38.8 | -38807 | 7.1 | HDAC1 PKNOX1 FOXA2 NFIB SIN3A ZBTB40 RAD21 GATA2 FOS RCOR1 | ICK FBXO9 GC06P053016 RN7SK ENSG00000202198 |
| GH06G053306 | 1.9 | FANTOM5 Ensembl ENCODE dbSUPER | 6.2 | +258.5 | 258451 | 8.1 | HDGF PKNOX1 FOXA2 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 | ELOVL5 RPL31P28 TRAM2 FBXO9 PIR59384 RPS16P5 |
| GH06G053332 | 1.8 | FANTOM5 Ensembl ENCODE dbSUPER | 5.8 | +284.0 | 284007 | 6.4 | HDGF FOXA2 WRNIP1 BMI1 ZBTB40 ZNF366 SCRT2 ZNF207 RELB ETV6 | ELOVL5 FBXO9 RPS16P5 PIR59384 |
| GH06G053023 | 0.5 | dbSUPER | 11.9 | -26.9 | -26900 | 4.6 | ZMYM3 ZNF24 ATF2 | ICK FBXO9 GSTA3 GC06P053034 GC06P053016 |
| GH06G053022 | 0.4 | dbSUPER | 11.3 | -28.6 | -28624 | 1.9 | ZNF24 | ICK FBXO9 GSTA3 GC06P053016 GC06P053034 |
- Elite enhancer and/or Elite enhancer-gene association
Download GeneHancer data dump
Enhancers around FBXO9 on UCSC Golden Path with GeneCards custom track
- Transcription factor binding sites by QIAGEN in the FBXO9 gene promoter:
Regulatory Element Products
Genomic Location for FBXO9 Gene
- Chromosome:
- 6
- Start:
- 53,051,991 bp from pter
- End:
- 53,100,873 bp from pter
- Size:
- 48,883 bases
- Orientation:
- Plus strand
Genomic View for FBXO9 Gene
Genes around FBXO9 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 6p12.1 by Ensembl
- 6p12.1 by Entrez Gene
- 6p12.1 by HGNC
FBXO9 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for FBXO9 Gene
Proteins for FBXO9 Gene
-
Protein details for FBXO9 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q9UK97-FBX9_HUMAN
- Recommended name:
- F-box only protein 9
- Protein Accession:
- Q9UK97
- A6NFW3
- B3KMM6
- O75986
- Q59EH8
- Q6PKH7
- Q9NT57
- Q9Y593
Protein attributes for FBXO9 Gene
- Size:
- 447 amino acids
- Molecular mass:
- 52329 Da
- Quaternary structure:
-
- Part of the SCF (SKP1-CUL1-F-box) E3 ubiquitin-protein ligase complex SCF(FBXO9) composed of CUL1, SKP1, RBX1 and FBXO9. Interacts with TTI1 and TELO2; when TTI1 and TELO2 are phosphorylated by CK2.
- Miscellaneous:
-
- Overexpressed in multiple myeloma leading to constitutive activation of the PI(3)K/mTORC2/Akt pathway to promote survival.
Protein Expression for FBXO9 Gene
Post-translational modifications for FBXO9 Gene
Other Protein References for FBXO9 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
-
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Protein Products
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- antibodies-online Proteins for FBXO9: See all 7
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Assay Products
- antibodies-online Kits for FBXO9: See all 15
No data available for DME Specific Peptides for FBXO9 Gene
Domains & Families for FBXO9 Gene
Gene Families for FBXO9 Gene
- HGNC:
Suggested Antigen Peptide Sequences for FBXO9 Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
No data available for UniProtKB/Swiss-Prot for FBXO9 Gene
Function for FBXO9 Gene
Molecular function for FBXO9 Gene
- UniProtKB/Swiss-Prot Function:
- Substrate recognition component of a SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of TTI1 and TELO2 in a CK2-dependent manner, thereby directly regulating mTOR signaling. SCF(FBXO9) recognizes and binds mTORC1-bound TTI1 and TELO2 when they are phosphorylated by CK2 following growth factor deprivation, leading to their degradation. In contrast, the SCF(FBXO9) does not mediate ubiquitination of TTI1 and TELO2 when they are part of the mTORC2 complex. As a consequence, mTORC1 is inactivated to restrain cell growth and protein translation, while mTORC2 is activated due to the relief of feedback inhibition by mTORC1.
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0004842 | ubiquitin-protein transferase activity | TAS | -- |
| GO:0005515 | protein binding | IPI | 22632967 |
Phenotypes for FBXO9 Gene
- MGI mutant phenotypes for FBXO9:
- inferred from 1 alleles
- GenomeRNAi human phenotypes for FBXO9:
Animal Models for FBXO9 Gene
- MGI Knock Outs for FBXO9:
-
- Fbxo9 tm1b(EUCOMM)Hmgu
Animal Model Products
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-
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- Search ViGene Biosciences for FBXO9
CRISPR Products
-
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-
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miRNA for FBXO9 Gene
- miRTarBase miRNAs that target FBXO9
-
- hsa-mir-192-3p (MIRT523741)
- hsa-mir-1277-5p (MIRT523742)
- hsa-mir-587 (MIRT523743)
- hsa-mir-5011-5p (MIRT523744)
- hsa-mir-190a-3p (MIRT523745)
- hsa-mir-4789-5p (MIRT523746)
- hsa-mir-3941 (MIRT523747)
- hsa-mir-603 (MIRT523748)
- hsa-mir-362-3p (MIRT523749)
- hsa-mir-329-3p (MIRT523750)
- hsa-mir-8485 (MIRT523751)
- hsa-mir-5189-3p (MIRT658177)
- hsa-mir-4753-3p (MIRT658178)
- hsa-mir-130b-5p (MIRT658179)
- hsa-mir-1283 (MIRT658180)
- hsa-mir-6769b-3p (MIRT658181)
- hsa-mir-4723-3p (MIRT658182)
- hsa-mir-3183 (MIRT658183)
- hsa-mir-6800-3p (MIRT658184)
- hsa-mir-4753-5p (MIRT658185)
- hsa-mir-6768-3p (MIRT658186)
- hsa-mir-4729 (MIRT703577)
miRNA Products
- Search ViGene Biosciences for FBXO9
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-
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-
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Flow Cytometry Products
No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for FBXO9 Gene
Localization for FBXO9 Gene
Subcellular locations from UniProtKB/Swiss-Prot for FBXO9 Gene
- Cytoplasm.
| Compartment | Confidence |
|---|---|
| cytosol | 5 |
| cytoskeleton | 2 |
| nucleus | 2 |
| peroxisome | 1 |
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0000151 | ubiquitin ligase complex | NAS | 10531035 |
| GO:0005737 | cytoplasm | IEA,IDA | 23263282 |
| GO:0005829 | cytosol | TAS | -- |
| GO:0019005 | SCF ubiquitin ligase complex | IDA | 23263282 |
Pathways & Interactions for FBXO9 Gene
| SuperPathway | Contained pathways | ||
|---|---|---|---|
| 1 | Class I MHC mediated antigen processing and presentation | ||
| 2 | Innate Immune System |
.61
|
|
Pathways by source for FBXO9 Gene
4 Reactome pathways for FBXO9 Gene
UniProtKB/Swiss-Prot Q9UK97-FBX9_HUMAN
- Pathway: Protein modification; protein ubiquitination.
Interacting Proteins for FBXO9 Gene
Selected Interacting proteins:
ENSP00000244426
Q9UK97-FBX9_HUMAN
for FBXO9 Gene via
STRING
IID
UniProtKB
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0000209 | protein polyubiquitination | TAS | -- |
| GO:0016567 | protein ubiquitination | NAS | 10531035 |
| GO:0031146 | SCF-dependent proteasomal ubiquitin-dependent protein catabolic process | IDA | 23263282 |
| GO:0032006 | regulation of TOR signaling | IMP | 23263282 |
| GO:0043687 | post-translational protein modification | TAS | -- |
No data available for SIGNOR curated interactions for FBXO9 Gene
Transcripts for FBXO9 Gene
mRNA/cDNA for FBXO9 Gene
- (5) REFSEQ mRNAs :
- (9) Additional mRNA sequences :
- (291) Selected AceView cDNA sequences:
- (13) Ensembl transcripts including schematic representations, and UCSC links where relevant :
CRISPR Products
-
OriGene CRISPR knockouts for FBXO9
-
Santa Cruz Biotechnology (SCBT) CRISPR for FBXO9
- GenScript: Design CRISPR guide RNA sequences for FBXO9
miRNA Products
- Search ViGene Biosciences for FBXO9
Inhibitory RNA Products
- Origene shRNA, siRNA, and RNAi products in human, mouse, rat for FBXO9
- Browse OriGene Inhibitory RNA Products For FBXO9
-
ViGene Biosciences ready-to-package AAV shRNAs for FBXO9 gene
Clone Products
- Sino Biological Human cDNA Clone for FBXO9
- Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat
Flow Cytometry Products
| ExUns: | 1 | ^ | 2a | · | 2b | ^ | 3 | ^ | 4 | ^ | 5a | · | 5b | ^ | 6 | ^ | 7 | ^ | 8a | · | 8b | ^ | 9a | · | 9b | ^ | 10 | ^ | 11 | ^ | 12a | · | 12b | ^ | 13a | · | 13b |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SP1: | - | - | - | - | |||||||||||||||||||||||||||||||||
| SP2: | |||||||||||||||||||||||||||||||||||||
| SP3: | - | ||||||||||||||||||||||||||||||||||||
| SP4: | - | ||||||||||||||||||||||||||||||||||||
| SP5: | |||||||||||||||||||||||||||||||||||||
| SP6: |
Expression for FBXO9 Gene
mRNA expression in embryonic tissues and stem cells from LifeMap Discovery
- Bone (Muscoskeletal System)
This gene is overexpressed in Urinary Bladder (47.4) and CD8 Tcells (16.0).
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for FBXO9 Gene
NURSA nuclear receptor signaling pathways regulating expression of FBXO9 Gene:
FBXO9SOURCE GeneReport for Unigene cluster for FBXO9 Gene:
Hs.216653Evidence on tissue expression from TISSUES for FBXO9 Gene
- Nervous system(4.7)
- Heart(4.3)
- Liver(4.3)
- Skin(4.3)
Primer Products
-
OriGene qPCR primer pairs and template standards for FBXO9
-
OriGene qPCR primer pairs for FBXO9
No data available for mRNA differential expression in normal tissues , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for FBXO9 Gene
Orthologs for FBXO9 Gene
This gene was present in the common ancestor of animals and fungi.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | FBXO9 34 35 |
|
||
| dog (Canis familiaris) |
Mammalia | FBXO9 34 35 |
|
||
| cow (Bos Taurus) |
Mammalia | FBXO9 34 35 |
|
||
| rat (Rattus norvegicus) |
Mammalia | Fbxo9 34 |
|
||
| mouse (Mus musculus) |
Mammalia | Fbxo9 34 16 35 |
|
||
| oppossum (Monodelphis domestica) |
Mammalia | FBXO9 35 |
|
OneToOne | |
| platypus (Ornithorhynchus anatinus) |
Mammalia | -- 35 |
|
OneToMany | |
| -- 35 |
|
OneToMany | |||
| chicken (Gallus gallus) |
Aves | FBXO9 34 35 |
|
||
| lizard (Anolis carolinensis) |
Reptilia | FBXO9 35 |
|
OneToOne | |
| tropical clawed frog (Silurana tropicalis) |
Amphibia | fbxo9 34 |
|
||
| MGC75727 34 |
|
||||
| African clawed frog (Xenopus laevis) |
Amphibia | fbxo9-prov 34 |
|
||
| zebrafish (Danio rerio) |
Actinopterygii | fbxo9 34 35 |
|
||
| wufc79g12 34 |
|
||||
| rainbow trout (Oncorhynchus mykiss) |
Actinopterygii | Omy.856 34 |
|
||
| African malaria mosquito (Anopheles gambiae) |
Insecta | AgaP_AGAP006784 34 |
|
||
| fruit fly (Drosophila melanogaster) |
Insecta | CG5961 36 34 35 |
|
||
| baker's yeast (Saccharomyces cerevisiae) |
Saccharomycetes | HRT3 37 35 |
|
||
| sea squirt (Ciona savignyi) |
Ascidiacea | -- 35 |
|
OneToOne |
- Species where no ortholog for FBXO9 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
Paralogs for FBXO9 Gene
No data available for Paralogs for FBXO9 Gene
Variants for FBXO9 Gene
| SNP ID | Clin | Chr 06 pos | Sequence Context | AA Info | Type |
|---|---|---|---|---|---|
| rs1000044763 | -- | 53,056,742(+) | TCACA(A/G)TAAAG | intron-variant, upstream-variant-2KB | |
| rs1000073603 | -- | 53,063,899(+) | CCAGC(C/T)TCACC | intron-variant, upstream-variant-2KB | |
| rs1000095883 | -- | 53,080,432(+) | AAGCT(C/T)ATTTT | intron-variant | |
| rs1000109191 | -- | 53,087,362(+) | AAAAA(A/G)AGAGA | intron-variant | |
| rs1000426908 | -- | 53,080,725(+) | CAACA(C/T)CTGTA | intron-variant |
Residual Variation Intolerance Score:
42.9% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score:
1.34;
26.48% of all genes are more intolerant (likely to be disease-causing)
Relevant External Links for FBXO9 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- FBXO9
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for FBXO9 Gene
Disorders for FBXO9 Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| multiple myeloma |
|
|
| epilepsy, generalized, with febrile seizures plus, type 5 |
|
|
| usher syndrome, type 1b |
|
|
Search FBXO9 in MalaCards
View complete list of genes associated with diseases
Relevant External Links for FBXO9
- Atlas of Genetics and Cytogenetics in Oncology and Haematology:
- FBXO9
No data available for UniProtKB/Swiss-Prot and Genatlas for FBXO9 Gene
Publications for FBXO9 Gene
- Identification of a family of human F-box proteins. (PMID: 10531035) Cenciarelli C. … Pagano M. (Curr. Biol. 1999) 2 3 4 64
- A family of mammalian F-box proteins. (PMID: 10531037) Winston J.T. … Harper J.W. (Curr. Biol. 1999) 2 3 4 64
- SCF(Fbxo9) and CK2 direct the cellular response to growth factor withdrawal via Tel2/Tti1 degradation and promote survival in multiple myeloma. (PMID: 23263282) Fernandez-Saiz V. … Bassermann F. (Nat. Cell Biol. 2013) 3 4 64
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
Products for FBXO9 Gene
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- Mammalian expression: PiggyBac
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- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for FBXO9 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
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