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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

FBXO8 Gene

protein-coding   GIFtS: 47
GCID: GC04M175157

F-box protein 8

(Previous name: F-box only protein 8 )
  Search for FBXO8
in our new
 Human Malady Compendium 
Biological research products
for FBXO8
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
F-Box Protein 81 2
FBS1 2 3 5
FBX81 2 3 5
F-Box Only Protein 81 2
F-Box/SEC7 Protein FBS2 3
F-Box Protein Fbx82

External Ids:    HGNC: 135871   Entrez Gene: 262692   Ensembl: ENSG000001641177   OMIM: 6056495   UniProtKB: Q9NRD03   

Export aliases for FBXO8 gene to outside databases

Previous GC identifers: GC04M176077 GC04M175695 GC04M175742 GC04M175853 GC04M175532 GC04M175394 GC04M170904


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for FBXO8:
This gene encodes a member of the F-box protein family which is characterized by an approximately 40 amino acid motif,
the F-box. The F-box proteins constitute one of the four subunits of the ubiquitin protein ligase complex called SCFs
(SKP1-cullin-F-box), which function in phosphorylation-dependent ubiquitination. The F-box proteins are divided into 3
classes: Fbws containing WD-40 domains, Fbls containing leucine-rich repeats, and Fbxs containing either different
protein-protein interaction modules or no recognizable motifs. The protein encoded by this gene belongs to the Fbxs
class. It contains a C-terminal amino acid sequence that bears a significant similarity with a portion of yeast Sec7p,
a critical regulator of vesicular protein transport. This human protein may interact with ADP-ribosylation
factor(s)(ARFs) and exhibit ARF-GEF (guanine nucleotide exchange factor) activity. (provided by RefSeq, Jul 2008)

UniProtKB/Swiss-Prot: FBX8_HUMAN, Q9NRD0
Function: May promote guanine-nucleotide exchange on an ARF. Promotes the activation of ARF through replacement of GDP
with GTP (Potential)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000004.11  NC_018915.1  NT_016354.19  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the FBXO8 gene promoter:
         NCX/Ncx   HTF   LUN-1   Cdc5   MZF-1   AREB6   RORalpha1   POU2F1   POU2F1a   Pax-4a   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmids (see all 2): FBXO8 promoter sequence
   Search SABiosciences Chromatin IP Primers for FBXO8

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat FBXO8


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 4q34.1   Ensembl cytogenetic band:  4q34.1   HGNC cytogenetic band: 4q34.1

FBXO8 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
FBXO8 gene location

GeneLoc information about chromosome 4         GeneLoc Exon Structure

GeneLoc location for GC04M175157:  view genomic region     (about GC identifiers)

Start:
175,157,809 bp from pter      End:
175,205,415 bp from pter
Size:
47,607 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: FBX8_HUMAN, Q9NRD0 (See protein sequence)
Recommended Name: F-box only protein 8  
Size: 319 amino acids; 37068 Da
Sequence caution: Sequence=AAF04517.1; Type=Erroneous initiation;
Secondary accessions: B2RB40 D3DP41 Q6UWN4 Q9NRP5 Q9UKC4

Explore the universe of human proteins at neXtProt for FBXO8: NX_Q9NRD0

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q9NRD0

  • FBXO8 Protein expression data from MOPED and PaxDb:    About this image 
    FBXO8 Protein Expression
    REFSEQ proteins: NP_036312.2  
    ENSEMBL proteins: 
     ENSP00000377280   ENSP00000422905   ENSP00000427313   ENSP00000427506  

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    Uscn Proteins for FBXO8

    Gene Ontology (GO): 5 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000151ubiquitin ligase complex NAS10945468
    GO:0005622intracellular ----
    GO:0005634nucleus IBA--
    GO:0005802NOT trans-Golgi network IBA--
    GO:0030054cell junction IBA--

    FBXO8 for ontologies           About GeneDecksing



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    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    FBXO8 for domains           About GeneDecksing

    3 InterPro domains/families:
     IPR023394 SEC7_alpha_orthog
     IPR001810 F-box_dom_cyclin-like
     IPR000904 Sec7

    Graphical View of Domain Structure for InterPro Entry Q9NRD0

    ProtoNet protein and cluster: Q9NRD0

    1 Blocks protein family: IPB000904 SEC7-like domain

    UniProtKB/Swiss-Prot: FBX8_HUMAN, Q9NRD0
    Similarity: Contains 1 F-box domain
    Similarity: Contains 1 SEC7 domain


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, Sirion Biotech, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, Sirion Biotech, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Molecular Function:

         UniProtKB/Swiss-Prot Summary: FBX8_HUMAN, Q9NRD0
    Function: May promote guanine-nucleotide exchange on an ARF. Promotes the activation of ARF through replacement of GDP
    with GTP (Potential)

         Gene Ontology (GO): 1 molecular function term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005086ARF guanyl-nucleotide exchange factor activity NAS--
         
    FBXO8 for ontologies           About GeneDecksing


    Animal Models:
       inGenious Targeting Laboratory - Customizable classic, inducible, and humanized mouse model solutions for FBXO8 

    miRNA
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    hsa-miR-3163 hsa-miR-4328 hsa-miR-634 hsa-miR-561 hsa-miR-216b hsa-miR-218 hsa-miR-223 hsa-miR-544
    SwitchGear 3'UTR luciferase reporter plasmidFBXO8 3' UTR sequence
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    In Situ Assay
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    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways  About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1Arf6 signaling events
    Arf6 signaling events1.00


    1 BioSystems Pathway for FBXO8 
        Arf6 signaling events


    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for FBXO8

    STRING Interaction Network Preview (showing 5 interactants - click image to see 6)

    5/6 Interacting proteins for FBXO8 (Q9NRD03 ENSP000003772804) via UniProtKB, MINT, STRING, and/or I2D (see all 6)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    SKP1P632083, ENSP000002314874I2D: score=3 STRING: ENSP00000231487
    CUL1Q136163, ENSP000003268044I2D: score=1 STRING: ENSP00000326804
    ARF6P623303, ENSP000002983164I2D: score=1 STRING: ENSP00000298316
    UBCP0CG483, ENSP000003448184I2D: score=1 STRING: ENSP00000344818
    MYCENSP000003672074STRING: ENSP00000367207
    About this table

    Gene Ontology (GO): 4 biological process terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006511ubiquitin-dependent protein catabolic process NAS10945468
    GO:0016192NOT vesicle-mediated transport IBA--
    GO:0030036actin cytoskeleton organization IBA--
    GO:0032012regulation of ARF protein signal transduction IEA--

    FBXO8 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for FBXO8

    1 HMDB Compound for FBXO8    About this table
    CompoundSynonyms CAS #PubMed Ids
    Guanosine triphosphate5'-GTP (see all 10)86-01-1--
    Search CenterWatch for drugs/clinical trials and news about FBXO8 / FBX8 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, Sirion Biotech, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for FBXO8 gene: 
    NM_012180.2  

    Unigene Cluster for FBXO8:

    F-box protein 8
    Hs.76917  [show with all ESTs]
    Unigene Representative Sequence: NM_012180
    4 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000393674(uc003itp.3 uc003itq.3) ENST00000503293 ENST00000515664
    ENST00000513696

    miRNA
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    8/11 QIAGEN miScript miRNA Assays for microRNAs that regulate FBXO8 (see all 11):
    hsa-miR-3163 hsa-miR-4328 hsa-miR-634 hsa-miR-561 hsa-miR-216b hsa-miR-218 hsa-miR-223 hsa-miR-544
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    Additional cDNA sequence: 

    AF115514.1 AF174596.1 AF201932.1 AF233224.1 AK026319.1 AK123740.1 AK314483.1 AY358721.1 
    BC014679.2 BC014903.1 BC040456.1 

    7 DOTS entries:

    DT.453294  DT.100793143  DT.100766227  DT.95200782  DT.100028146  DT.121271481  DT.92439080 

    24/217 AceView cDNA sequences (see all 217):

    BG200344 AL543285 CR617381 AI472064 CK904242 CR603561 BF001727 BI225297 
    AW261927 CK904243 BM979219 BX460164 CD108902 CB156073 BC014679 CR621638 
    CA418592 BI827173 AK026319 NM_012180 BI791572 CR592920 AA933777 AY358721 

    GeneLoc Exon Structure

    5 Alternative Splicing Database (ASD) splice patterns (SP) for FBXO8    About this scheme

    ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6a · 6b ^ 7 ^ 8a · 8b
    SP1:                                            -     -                                 
    SP2:                                                                                    
    SP3:                                            -     -                                 
    SP4:                                                                                    
    SP5:                                      -     -     -                                 


    ECgene alternative splicing isoforms for FBXO8

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    FBXO8 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: --
    FBXO8 Expression
    About this image
    See FBXO8 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for FBXO8

    SOURCE GeneReport for Unigene cluster: Hs.76917
        SABiosciences Custom PCR Arrays for FBXO8

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    In Situ
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of eukaryotes.

    Orthologs for FBXO8 gene from 5/20 species (see all 20)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chicken
    (Gallus gallus)
    Aves FBXO81 F-box protein 8 86.42(n)
    95.92(a)
      422565  NM_001006446.1  NP_001006446.1 
    lizard
    (Anolis carolinensis)
    Reptilia FBXO86
    --
    94(a)
    1 ↔ 1
    3(144007660-144019767)
    African clawed frog
    (Xenopus laevis)
    Amphibia Xl.186502 Xenopus laevis transcribed sequence with strong similarity more 82.61(n)    BI443365.1 
    zebrafish
    (Danio rerio)
    Actinopterygii fbxo81 F-box protein 8 70.13(n)
    80.82(a)
      678549  NM_001040307.1  NP_001035397.1 
    rice
    (Oryza sativa)
    Liliopsida --
    guanine nucleotide exchange family protein, putati...

    1 → many
    6(25049896-25054632)


    ENSEMBL Gene Tree for FBXO8 (if available)
    TreeFam Gene Tree for FBXO8 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for FBXO8 gene
    PSD32  GBF12  CYTH32  IQSEC32  CYTH22  ARFGEF22  PSD42  ARFGEF12  
    IQSEC12  PSD22  PSD2  IQSEC22  CYTH42  CYTH12  
    2 SIMAP similar genes for FBXO8 using alignment to 6 protein entries:     FBX8_HUMAN (see all proteins):
    MST051    FBXO11

    FBXO8 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/713 NCBI SNPs in FBXO8 are shown (see all 713    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 4 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1820648231,2
    --175157389(+) TCCCTC/TCTCTA 1 -- ds50010--------
    rs730094811,2
    C--175157546(+) ATATAC/TTTCAT 1 -- ds50011Minor allele frequency- T:0.50WA 2
    rs1400772231,2
    C--175157574(+) GCAGA-/TTTTTT 1 -- ds50010--------
    rs1395283531,2
    --175157614(+) GTGAGA/CGCAGG 1 -- ds50010--------
    rs1877631921,2
    --175157637(+) TACCTC/TGCACA 1 -- ds50010--------
    rs1924757091,2
    --175157651(+) TTAACA/GCATGT 1 -- ds50010--------
    rs173571201,2
    C,F,H--175157743(+) TGAACG/AGGGAT 1 -- ds500122Minor allele frequency- A:0.29NA NS EA WA CSA 2362
    rs754389051,2
    C--175157944(+) TCAAAA/TTATAA 1 -- ut310--------
    rs1853287921,2
    --175158034(+) GGAAGC/TTGGTA 1 -- ut310--------
    rs1901760611,2
    --175158062(+) TCAGAA/TCTAAC 1 -- ut310--------

    HapMap Linkage Disequilibrium report for FBXO8 (175157809 - 175205415 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
          Database of Genomic Variants (DGV) variations for FBXO8: --

    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing FBXO8
    DNA2.0 Custom Variant and Variant Library Synthesis for FBXO8

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    FBXO8 for disorders           About MalaCards

    FBXO8 for disorders           About GeneDecksing

    OMIM gene information: 605649    OMIM disorders: --

    Human Genome Epidemiology (HuGE) Navigator: FBXO8 (1 document)

    Export disorders for FBXO8 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for FBXO8 gene, integrated from 9 sources (see all 14):
    (articles sorted by number of sources associating them with FBXO8)
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    1. Identification of a family of human F-box proteins. (PubMed id 10531035)1, 2, 3 Cenciarelli C....Pagano M. (1999)
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    4. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PubMed id 12975309)1, 2 Clark H.F.... Gray A.M. (2003)
    5. cDNA cloning and expression analysis of new members of the mammalian F-box protein family. (PubMed id 10945468)1, 2 Ilyin G.P.... Guguen-Guillouzo C. (2000)
    6. A family of mammalian F-box proteins. (PubMed id 10531037)1, 3 Winston J.T....Harper J.W. (1999)
    7. c-Myc stimulates cell invasion by inhibiting FBX8 fun ction. (PubMed id 20848231)1 Cho H.J....Kim H. (2010)
    8. Ubiquitin-mediated proteolysis of HuR by heat shock. (PubMed id 19322201)1 Abdelmohsen K....Gorospe M. (2009)
    9. Fbx8 makes Arf6 refractory to function via ubiquitination. (PubMed id 18094045)1 Yano H....Sabe H. (2008)
    10. Screening for replication of genome-wide SNP associations in sporadic ALS. (PubMed id 18987618)1 Cronin S....Hardiman O. (2008)

    (in PubMed, OMIM, and NCBI Bookshelf)
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    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 26269 HGNC: 13587 AceView: FBXO8 Ensembl:ENSG00000164117 euGenes: HUgn26269
    ECgene: FBXO8 H-InvDB: FBXO8

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for FBXO8 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for FBXO8 gene:
    Search GeneIP for patents involving FBXO8

    GeneCards and IP:
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