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Aliases for FBXO46 Gene

Aliases for FBXO46 Gene

  • F-Box Protein 46 2 3 5
  • F-Box Only Protein 34-Like 2 4
  • FBXO34L 3 4
  • Fbx46 3 4
  • F-Box Only Protein 46 3
  • 20D7-FC4 3

External Ids for FBXO46 Gene

Previous HGNC Symbols for FBXO46 Gene

  • FBXO34L

Previous GeneCards Identifiers for FBXO46 Gene

  • GC19M050906
  • GC19M046213
  • GC19M042642

Summaries for FBXO46 Gene

Entrez Gene Summary for FBXO46 Gene

  • Members of the F-box protein family, such as FBXO46, are characterized by an approximately 40-amino acid F-box motif. SCF complexes, formed by SKP1 (MIM 601434), cullin (see CUL1; MIM 603134), and F-box proteins, act as protein-ubiquitin ligases. F-box proteins interact with SKP1 through the F box, and they interact with ubiquitination targets through other protein interaction domains (Jin et al., 2004 [PubMed 15520277]).[supplied by OMIM, Mar 2008]

GeneCards Summary for FBXO46 Gene

FBXO46 (F-Box Protein 46) is a Protein Coding gene. An important paralog of this gene is FBXO34.

UniProtKB/Swiss-Prot for FBXO46 Gene

  • Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex.

Additional gene information for FBXO46 Gene

No data available for CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FBXO46 Gene

Genomics for FBXO46 Gene

Regulatory Elements for FBXO46 Gene

Enhancers for FBXO46 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19H044844 1.8 FANTOM5 ENCODE dbSUPER 80.9 +882.9 882890 7 YBX1 DMAP1 YY1 ZNF416 ZNF143 SP3 MCM3 ZNF610 GLIS1 RCOR2 ZNF180 ZNF45 CLASRP ZNF224 ZNF225 ZNF234 ZNF284 FBXO46 ENSG00000269148 LOC100505715
GH19H045401 1.7 FANTOM5 ENCODE dbSUPER 35.8 +326.3 326332 6 FEZF1 YY1 ZNF143 SP3 MEF2D GLIS1 RCOR2 NBN NR2C1 KDM1A ZNF180 CCDC61 CLASRP FBXO46 ENSG00000269148 CD3EAP IRF2BP1 ERCC1 RPS16P9 ENSG00000267614
GH19H044740 2.1 FANTOM5 Ensembl ENCODE dbSUPER 28.5 +980.9 980887 19 YBX1 FEZF1 YY1 ZNF143 ZNF548 SP3 ZC3H11A MEF2D ZNF610 GLIS1 ZNF45 ZNF224 ZNF155 ZNF180 ZNF284 ZNF225 ZNF234 CLASRP ZNF235 ZNF283
GH19H045613 1.5 Ensembl ENCODE dbSUPER 38.2 +115.6 115601 3 HDGF PKNOX1 SIN3A GLI4 ZNF2 YY1 GTF3C2 GLIS2 ZNF302 ZNF143 CCDC61 FBXO46 CLASRP ENSG00000269148 BLOC1S3 ENSG00000269124 EML2 PIR54112 GC19M045633
GH19H045763 1.7 Ensembl ENCODE dbSUPER 33.3 -37.9 -37938 10 HDGF PKNOX1 FOXA2 MLX ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 CCDC61 SYMPK CLASRP FBXO46 ENSG00000267114 ENSG00000268810 ENSG00000269148 DMPK BHMG1 DMWD
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FBXO46 on UCSC Golden Path with GeneCards custom track

Promoters for FBXO46 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000110259 204 1401 HDGF FOXA2 ARID4B SIN3A DMAP1 YY1 ZNF766 ZNF207 ZNF143 DEK

Genomic Location for FBXO46 Gene

Chromosome:
19
Start:
45,710,629 bp from pter
End:
45,730,904 bp from pter
Size:
20,276 bases
Orientation:
Minus strand

Genomic View for FBXO46 Gene

Genes around FBXO46 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FBXO46 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FBXO46 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FBXO46 Gene

Proteins for FBXO46 Gene

  • Protein details for FBXO46 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6PJ61-FBX46_HUMAN
    Recommended name:
    F-box only protein 46
    Protein Accession:
    Q6PJ61

    Protein attributes for FBXO46 Gene

    Size:
    603 amino acids
    Molecular mass:
    64631 Da
    Quaternary structure:
    • Interacts with SKP1 and CUL1.
    SequenceCaution:
    • Sequence=AAH21978.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=AAH21978.1; Type=Erroneous termination; Positions=604; Note=Translated as stop.; Evidence={ECO:0000305};

neXtProt entry for FBXO46 Gene

Post-translational modifications for FBXO46 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for FBXO46 Gene

No data available for DME Specific Peptides for FBXO46 Gene

Domains & Families for FBXO46 Gene

Gene Families for FBXO46 Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for FBXO46 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for FBXO46 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with FBXO46: view

No data available for UniProtKB/Swiss-Prot for FBXO46 Gene

Function for FBXO46 Gene

Molecular function for FBXO46 Gene

UniProtKB/Swiss-Prot Function:
Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex.

Phenotypes From GWAS Catalog for FBXO46 Gene

Gene Ontology (GO) - Molecular Function for FBXO46 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 19159283
genes like me logo Genes that share ontologies with FBXO46: view

Phenotypes for FBXO46 Gene

genes like me logo Genes that share phenotypes with FBXO46: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for FBXO46
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for FBXO46 Gene

Localization for FBXO46 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for FBXO46 gene
Compartment Confidence
cytosol 3
plasma membrane 2
mitochondrion 2
nucleus 2
peroxisome 1
endoplasmic reticulum 1

Subcellular locations from the

Human Protein Atlas (HPA)
  • Cytosol (2)
  • Nucleus (2)
  • Vesicles (2)
See all subcellular structures

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for FBXO46 Gene

Pathways & Interactions for FBXO46 Gene

SuperPathways for FBXO46 Gene

No Data Available

Gene Ontology (GO) - Biological Process for FBXO46 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FBXO46 Gene

Drugs & Compounds for FBXO46 Gene

No Compound Related Data Available

Transcripts for FBXO46 Gene

Unigene Clusters for FBXO46 Gene

F-box protein 46:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for FBXO46
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for FBXO46 Gene

No ASD Table

Relevant External Links for FBXO46 Gene

GeneLoc Exon Structure for
FBXO46
ECgene alternative splicing isoforms for
FBXO46

Expression for FBXO46 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FBXO46 Gene

Protein differential expression in normal tissues from HIPED for FBXO46 Gene

This gene is overexpressed in Fetal Liver (31.9) and Blymphocyte (24.4).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for FBXO46 Gene



Protein tissue co-expression partners for FBXO46 Gene

NURSA nuclear receptor signaling pathways regulating expression of FBXO46 Gene:

FBXO46

SOURCE GeneReport for Unigene cluster for FBXO46 Gene:

Hs.128702
genes like me logo Genes that share expression patterns with FBXO46: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FBXO46 Gene

Orthologs for FBXO46 Gene

This gene was present in the common ancestor of chordates.

Orthologs for FBXO46 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia FBXO46 34 33
  • 98.59 (n)
OneToOne
dog
(Canis familiaris)
Mammalia FBXO46 33 34
  • 88.89 (n)
cow
(Bos Taurus)
Mammalia FBXO46 33
  • 88.68 (n)
rat
(Rattus norvegicus)
Mammalia Fbxo46 33
  • 84.26 (n)
mouse
(Mus musculus)
Mammalia Fbxo46 33 16 34
  • 83.59 (n)
oppossum
(Monodelphis domestica)
Mammalia FBXO46 34
  • 69 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia FBXO46 34
  • 57 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.12966 33
zebrafish
(Danio rerio)
Actinopterygii si:dkey-114g7.4 33
  • 59.18 (n)
FBXO46 34
  • 46 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea CSA.10603 34
  • 17 (a)
OneToMany
Species where no ortholog for FBXO46 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for FBXO46 Gene

ENSEMBL:
Gene Tree for FBXO46 (if available)
TreeFam:
Gene Tree for FBXO46 (if available)

Paralogs for FBXO46 Gene

Paralogs for FBXO46 Gene

genes like me logo Genes that share paralogs with FBXO46: view

Variants for FBXO46 Gene

Sequence variations from dbSNP and Humsavar for FBXO46 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1000000521 -- 45,731,355(+) TCTGT(-/CACCCAGG)CTGGA intron-variant, upstream-variant-2KB
rs1000011890 -- 45,730,054(+) ATGCT(A/T)GCTGT intron-variant
rs1000033077 -- 45,731,034(+) CGGGC(A/G)GAGGA intron-variant, upstream-variant-2KB
rs1000079599 -- 45,723,978(+) TAAAC(A/G)TGGTA intron-variant, upstream-variant-2KB
rs1000569308 -- 45,725,768(+) CACAT(A/G)GACTA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FBXO46 Gene

Variant ID Type Subtype PubMed ID
esv22434 CNV loss 19812545
esv3556466 CNV deletion 23714750
nsv579870 CNV loss 21841781

Variation tolerance for FBXO46 Gene

Residual Variation Intolerance Score: 9.92% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.34; 7.48% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for FBXO46 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FBXO46

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FBXO46 Gene

Disorders for FBXO46 Gene

Relevant External Links for FBXO46

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FBXO46

No disorders were found for FBXO46 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FBXO46 Gene

Publications for FBXO46 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 60
  2. Six transcripts map within 200 kilobases of the myotonic dystrophy expanded repeat. (PMID: 9585442) Alwazzan M … Brook JD (Mammalian genome : official journal of the International Mammalian Genome Society 1998) 2 3 60
  3. Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3 60
  4. A High-Density Map for Navigating the Human Polycomb Complexome. (PMID: 27705803) Hauri S … Beisel C (Cell reports 2016) 3 60
  5. A human interactome in three quantitative dimensions organized by stoichiometries and abundances. (PMID: 26496610) Hein MY … Mann M (Cell 2015) 3 60

Products for FBXO46 Gene

Sources for FBXO46 Gene

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