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FBXO36 Gene

protein-coding   GIFtS: 43
GCID: GC02P230787

F-Box Protein 36

(Previous name: F-box only protein 36)
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disease database 

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
F-Box Protein 361 2
F-Box Only Protein 361 2
FBX363 5
Fbx362

External Ids:    HGNC: 270201   Entrez Gene: 1308882   Ensembl: ENSG000001538327   OMIM: 6091055   UniProtKB: Q8NEA43   

Export aliases for FBXO36 gene to outside databases

Previous GC identifers: GC02P230989 GC02P230612 GC02P230495 GC02P222626


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for FBXO36 Gene:
Members of the F-box protein family, such as FBXO36, are characterized by an approximately 40-amino acid F-box
motif. SCF complexes, formed by SKP1 (MIM 601434), cullin (see CUL1; MIM 603134), and F-box proteins, act as
protein-ubiquitin ligases. F-box proteins interact with SKP1 through the F box, and they interact with
ubiquitination targets through other protein interaction domains (Jin et al., 2004 (PubMed 15520277)).(supplied
by OMIM, Mar 2008)

GeneCards Summary for FBXO36 Gene:
FBXO36 (F-box protein 36) is a protein-coding gene.

UniProtKB/Swiss-Prot: FBX36_HUMAN, Q8NEA4
Function: Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex
(By similarity)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000002.11  NT_005403.18  NC_018913.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the FBXO36 gene promoter:
         E2F-4   E2F-3a   E2F-5   Sox5   Nkx2-5   E2F-2   PPAR-gamma1   E2F   E2F-1   PPAR-gamma2   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidFBXO36 promoter sequence
   Search Chromatin IP Primers for FBXO36

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat FBXO36


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 2q36.3   Ensembl cytogenetic band:  2q36.3   HGNC cytogenetic band: 2q37.1

FBXO36 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
FBXO36 gene location

GeneLoc information about chromosome 2         GeneLoc Exon Structure

GeneLoc location for GC02P230787:  view genomic region     (about GC identifiers)

Start:
230,787,018 bp from pter      End:
230,877,825 bp from pter
Size:
90,808 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: FBX36_HUMAN, Q8NEA4 (See protein sequence)
Recommended Name: F-box only protein 36  
Size: 188 amino acids; 22105 Da
Subunit: Directly interacts with SKP1 and CUL1 (By similarity)
Secondary accessions: Q53TE6 Q8WWD4

Explore the universe of human proteins at neXtProt for FBXO36: NX_Q8NEA4

Explore proteomics data for FBXO36 at MOPED


See FBXO36 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins: NP_777559.3  
ENSEMBL proteins: 
 ENSP00000362756   ENSP00000283946   ENSP00000386673  

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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HGNC Gene Families:
FBXO: F-boxes / "other"

1 InterPro protein domain:
 IPR001810 F-box_dom

Graphical View of Domain Structure for InterPro Entry Q8NEA4

ProtoNet protein and cluster: Q8NEA4

UniProtKB/Swiss-Prot: FBX36_HUMAN, Q8NEA4
Similarity: Contains 1 F-box domain


Find genes that share domains with FBXO36           About GenesLikeMe


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Molecular Function:

     UniProtKB/Swiss-Prot Summary: FBX36_HUMAN, Q8NEA4
Function: Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex
(By similarity)

     Gene Ontology (GO): 1 molecular function term:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005515protein binding ----
     
Find genes that share ontologies with FBXO36           About GenesLikeMe


Phenotypes:
     3 GenomeRNAi human phenotypes for FBXO36:
 Increased G1 DNA content  Increased cell death HMECs cel  Synthetic lethal with Ras 

Animal Models:
   inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for FBXO36
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miRNA
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hsa-mir-215-5p (MIRT024677), hsa-mir-192-5p (MIRT026437)

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7 qRT-PCR Assays for microRNAs that regulate FBXO36:
hsa-miR-577 hsa-miR-607 hsa-miR-19b hsa-miR-129-3p hsa-miR-3148 hsa-miR-129* hsa-miR-19a
SwitchGear 3'UTR luciferase reporter plasmidFBXO36 3' UTR sequence
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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from COMPARTMENTS: 

CompartmentConfidence
cytosol2
nucleus2
peroxisome1

(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for FBXO36
Interactions:

    Search GeneGlobe Interaction Network for FBXO36

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Small Molecules at EMD Millipore
   Browse drugs & compounds from Enzo Life Sciences
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Browse Tocris compounds for FBXO36 (FBX36)



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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REFSEQ mRNAs for FBXO36 gene: 
NM_174899.4  

Unigene Cluster for FBXO36:

F-box protein 36
Hs.140666  [show with all ESTs]
Unigene Representative Sequence: NM_174899
4 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000373652(uc002vqa.3 uc002vqb.3 uc010fxi.1) ENST00000465090(uc002vpz.3)
ENST00000283946 ENST00000409992
miRNA
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7 qRT-PCR Assays for microRNAs that regulate FBXO36:
hsa-miR-577 hsa-miR-607 hsa-miR-19b hsa-miR-129-3p hsa-miR-3148 hsa-miR-129* hsa-miR-19a
SwitchGear 3'UTR luciferase reporter plasmidFBXO36 3' UTR sequence
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  QuantiFast Probe-based Assays in human, mouse, rat FBXO36

Additional mRNA sequence: 

AK094911.1 AK289655.1 AK309702.1 BC033935.1 

6 DOTS entries:

DT.40242339  DT.99996207  DT.91664788  DT.100674936  DT.121022474  DT.92062844 

Selected AceView cDNA sequences (see all 39):

BF478249 AI623855 BU621714 BF000085 CA407833 AI990847 AA223956 BE907092 
AW589883 CB105259 BX283702 BU683671 AA993969 BG204586 AW002613 AA864869 
BM997950 AI694437 BG220318 AK123085 BM665323 AK094911 AW205975 BG679466 

GeneLoc Exon Structure

3 Alternative Splicing Database (ASD) splice patterns (SP) for FBXO36    About this scheme

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b
SP1:                    -     -                           
SP2:              -     -     -                           
SP3:                                                      


ECgene alternative splicing isoforms for FBXO36

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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FBXO36 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: --
FBXO36 Expression
About this image


FBXO36 expression in embryonic tissues and stem cells    About this table
Data from LifeMap, the Embryonic Development and Stem Cells Database
 selected tissues (see all 2) fully expand
 
 Eye (Sensory Organs)
         Retina
 
 Testis (Reproductive System)
FBXO36 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

FBXO36 Protein Expression

SOURCE GeneReport for Unigene cluster: Hs.140666
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(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of chordates.

Orthologs for FBXO36 gene from Selected species (see all 11)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
mouse
(Mus musculus)
Mammalia Fbxo361 , 5 F-box protein 361, 5 82.08(n)1
76.88(a)1
  1 (43.43 cM)5
661531  NM_025386.31  NP_079662.11 
 848398415 
lizard
(Anolis carolinensis)
Reptilia FBXO366
F-box protein 36
60(a)
1 ↔ 1
3(22396647-22424240)
tropical clawed frog
(Xenopus tropicalis)
Amphibia Str.167902 Transcribed sequence with weak similarity to protein more 69.61(n)    BQ389118.1 
zebrafish
(Danio rerio)
Actinopterygii fbxo36a1 F-box protein 36a 58.9(n)
55.83(a)
  767780  NM_001076747.1  NP_001070215.1 


ENSEMBL Gene Tree for FBXO36 (if available)
TreeFam Gene Tree for FBXO36 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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Paralogs for FBXO36 gene

Find genes that share paralogs with FBXO36           About GenesLikeMe


1 Pseudogenes.org Pseudogene for FBXO36
PGOHUM00000237492


(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for FBXO36 (see all 1536)    About this table                                 

Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 2 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs101742391,2
C--230788696(+) atctcA/Gtgatc 1 -- int10--------
rs1502441911,2
--230788755(+) GCGCCC/TGGCCT 1 -- int10--------
rs1930361361,2
--230788818(+) TGTTTA/GTTTAT 1 -- int10--------
rs133927401,2
C--230788957(+) gcgtgC/Ggccac 1 -- int10--------
rs1172858661,2
C,F--230789342(+) GCTGAG/ATATCT 1 -- int11Minor allele frequency- A:0.02EA 120
rs1848637491,2
--230789448(+) GCTCTC/TAAGTC 1 -- int10--------
rs1422067391,2
C--230789743(+) GCCCGA/GCCCTA 1 -- int10--------
rs1896652791,2
--230789767(+) AAGAAA/CTCTTT 1 -- int10--------
rs1459445531,2
--230789972(+) AGTGAA/GAGTTA 1 -- int10--------
rs133966971,2
C,H--230790163(+) AATAAG/ATACTA 1 -- int15Minor allele frequency- A:0.00NS EA NA 422

HapMap Linkage Disequilibrium report for FBXO36 (230787018 - 230877825 bp)

Structural Variations
     Database of Genomic Variants (DGV) Selected variations for FBXO36 (see all 11):    About this table    
Variant IDTypeSubtypePubMed ID
esv2721590CNV Deletion23290073
esv2675475CNV Deletion23128226
esv987544CNV Deletion20482838
esv2660647CNV Deletion23128226
nsv3201CNV Loss18451855
nsv875941CNV Loss21882294
esv21790CNV Loss19812545
esv32933CNV Loss17666407
esv2751841CNV Gain17911159
nsv460118CNV Gain19166990

Site Specific Mutation Identification with PCR Assays
SeqTarget long-range PCR primers for resequencing FBXO36
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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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OMIM gene information: 609105    OMIM disorders: --


Find genes that share disorders with FBXO36           About GenesLikeMe

Genetic Association Database (GAD): FBXO36
Human Genome Epidemiology (HuGE) Navigator: FBXO36 (1 document)

Export disorders for FBXO36 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for FBXO36 gene integrated from 10 sources:
(articles sorted by number of sources associating them with FBXO36)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614)1, 4 Rose J.E....Uhl G.R. (Mol. Med. 2010)
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (Nat. Genet. 2004)
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1, 3 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
  5. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PubMed id 15815621)2 Hillier L.W.... Wilson R.K. (Nature 2005)
  6. Systematic analysis and nomenclature of mammalian F-box proteins. (PubMed id 15520277)1 Jin J....Harper J.W. (Genes Dev. 2004)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 130888 HGNC: 27020 AceView: FBXO36 Ensembl:ENSG00000153832 euGenes: HUgn130888
ECgene: FBXO36 H-InvDB: FBXO36

(According to HUGE)
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  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for FBXO36 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for FBXO36 gene:
Search GeneIP for patents involving FBXO36

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, eBioscience, antibodies-online, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014 , 21 Aug 2014 , 8 Sep 2014 , 7 Oct 2014

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