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Aliases for FBXO16 Gene

Aliases for FBXO16 Gene

  • F-Box Protein 16 2 3
  • FBX16 3 4 6
  • F-Box Only Protein 16 2 3

External Ids for FBXO16 Gene

Summaries for FBXO16 Gene

Entrez Gene Summary for FBXO16 Gene

  • This gene encodes a member of the F-box protein family, members of which are characterized by an approximately 40 amino acid motif, the F-box. The F-box proteins constitute one of the four subunits of ubiquitin protein ligase complex called SCFs (SKP1-cullin-F-box), which function in phosphorylation-dependent ubiquitination. The F-box proteins are divided into three classes: Fbws containing WD-40 domains, Fbls containing leucine-rich repeats, and Fbxs containing either different protein-protein interaction modules or no recognizable motifs. The protein encoded by this gene belongs to the Fbx class. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Apr 2012]

GeneCards Summary for FBXO16 Gene

FBXO16 (F-Box Protein 16) is a Protein Coding gene. An important paralog of this gene is ECT2L.

UniProtKB/Swiss-Prot for FBXO16 Gene

  • Probably recognizes and binds to some phosphorylated proteins and promotes their ubiquitination and degradation

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FBXO16 Gene

Genomics for FBXO16 Gene

Genomic Location for FBXO16 Gene

Start:
28,348,287 bp from pter
End:
28,490,318 bp from pter
Size:
142,032 bases
Orientation:
Minus strand

Genomic View for FBXO16 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for FBXO16 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FBXO16 Gene

Regulatory Elements for FBXO16 Gene

Proteins for FBXO16 Gene

  • Protein details for FBXO16 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8IX29-FBX16_HUMAN
    Recommended name:
    F-box only protein 16
    Protein Accession:
    Q8IX29
    Secondary Accessions:
    • Q3T1B2
    • Q3T1B3
    • Q3T1B4

    Protein attributes for FBXO16 Gene

    Size:
    292 amino acids
    Molecular mass:
    34588 Da
    Quaternary structure:
    • Part of a SCF (SKP1-cullin-F-box) protein ligase complex.

    Alternative splice isoforms for FBXO16 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for FBXO16 Gene

Proteomics data for FBXO16 Gene at MOPED

Post-translational modifications for FBXO16 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for FBXO16 Gene

Domains for FBXO16 Gene

Gene Families for FBXO16 Gene

HGNC:
  • FBXO :F-boxes / "other"

Protein Domains for FBXO16 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for FBXO16 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8IX29

UniProtKB/Swiss-Prot:

FBX16_HUMAN
Domain:
  • Contains 1 F-box domain.:
    • Q8IX29
genes like me logo Genes that share domains with FBXO16: view

Function for FBXO16 Gene

Molecular function for FBXO16 Gene

UniProtKB/Swiss-Prot Function: Probably recognizes and binds to some phosphorylated proteins and promotes their ubiquitination and degradation

Gene Ontology (GO) - Molecular Function for FBXO16 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with FBXO16: view

Phenotypes for FBXO16 Gene

genes like me logo Genes that share phenotypes with FBXO16: view

No data available for Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for FBXO16 Gene

Localization for FBXO16 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for FBXO16 Gene COMPARTMENTS Subcellular localization image for FBXO16 gene
Compartment Confidence
nucleus 3
cytosol 1
extracellular 1
mitochondrion 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for FBXO16 Gene

Pathways for FBXO16 Gene

SuperPathways for FBXO16 Gene

No Data Available

Interacting Proteins for FBXO16 Gene

STRING Interaction Network Preview (showing 2 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000369604%0d%0a9606.ENSP00000231487%0d%0a9606.ENSP00000344818%0d%0a
Selected Interacting proteins: ENSP00000369604 Q8IX29-FBX16_HUMAN for FBXO16 Gene via STRING I2D

Gene Ontology (GO) - Biological Process for FBXO16 Gene

None

No data available for Pathways by source for FBXO16 Gene

Transcripts for FBXO16 Gene

Unigene Clusters for FBXO16 Gene

F-box protein 16:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FBXO16 Gene

No ASD Table

Relevant External Links for FBXO16 Gene

GeneLoc Exon Structure for
FBXO16
ECgene alternative splicing isoforms for
FBXO16

Expression for FBXO16 Gene

mRNA expression in normal human tissues for FBXO16 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for FBXO16 Gene

This gene is overexpressed in Pituitary (6.3).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for FBXO16 Gene

SOURCE GeneReport for Unigene cluster for FBXO16 Gene Hs.741522

mRNA Expression by UniProt/SwissProt for FBXO16 Gene

Q8IX29-FBX16_HUMAN
Tissue specificity: Expressed in heart, spleen and colon.
genes like me logo Genes that share expressions with FBXO16: view

Orthologs for FBXO16 Gene

This gene was present in the common ancestor of chordates.

Orthologs for FBXO16 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia FBXO16 35
  • 99.09 (n)
  • 98.97 (a)
FBXO16 36
  • 95 (a)
OneToOne
cow
(Bos Taurus)
Mammalia -- 36
  • 79 (a)
OneToMany
-- 36
  • 80 (a)
OneToMany
-- 36
  • 84 (a)
OneToMany
FBXO16 35
  • 91.96 (n)
  • 94.71 (a)
dog
(Canis familiaris)
Mammalia -- 36
  • 82 (a)
OneToMany
-- 36
  • 90 (a)
OneToMany
LOC102155575 35
  • 88.26 (n)
  • 90.04 (a)
mouse
(Mus musculus)
Mammalia Fbxo16 35
  • 83.1 (n)
  • 86.01 (a)
Fbxo16 16
Fbxo16 36
  • 73 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia FBXO16 36
  • 76 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia FBXO16 36
  • 64 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Fbxo16 35
  • 83.8 (n)
  • 86.36 (a)
chicken
(Gallus gallus)
Aves FBXO16 35
  • 70.45 (n)
  • 65.2 (a)
FBXO16 36
  • 60 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia FBXO16 36
  • 47 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia fbxo16 35
  • 67.98 (n)
  • 71.94 (a)
zebrafish
(Danio rerio)
Actinopterygii fbxo16 35
  • 59.95 (n)
  • 58.91 (a)
fbxo16 36
  • 41 (a)
OneToMany
FBXO16 (2 of 2) 36
  • 42 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 28 (a)
OneToMany
Species with no ortholog for FBXO16:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for FBXO16 Gene

ENSEMBL:
Gene Tree for FBXO16 (if available)
TreeFam:
Gene Tree for FBXO16 (if available)

Paralogs for FBXO16 Gene

Paralogs for FBXO16 Gene

Selected SIMAP similar genes for FBXO16 Gene using alignment to 6 proteins:

genes like me logo Genes that share paralogs with FBXO16: view

Variants for FBXO16 Gene

Sequence variations from dbSNP and Humsavar for FBXO16 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type MAF
rs11895 -- 28,428,554(-) CATGG(A/G)AAGAC utr-variant-3-prime
rs924183 -- 28,438,720(-) AAGTT(G/T)TGTAA intron-variant
rs924184 -- 28,438,654(-) GAACG(C/T)CACTG intron-variant
rs977971 -- 28,489,991(-) TAGCT(C/T)TTTGC intron-variant
rs1055741 -- 28,428,657(-) CCCAG(A/C)CACTG utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for FBXO16 Gene

Variant ID Type Subtype PubMed ID
dgv456n21 CNV Gain 19592680
nsv527661 CNV Loss 19592680
esv2678373 CNV Deletion 23128226
esv27064 CNV Loss 19812545
esv2666579 CNV Deletion 23128226

Relevant External Links for FBXO16 Gene

HapMap Linkage Disequilibrium report
FBXO16

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FBXO16 Gene

Disorders for FBXO16 Gene

No disorders were found for FBXO16 Gene.

No data available for UniProtKB/Swiss-Prot for FBXO16 Gene

Publications for FBXO16 Gene

  1. cDNA cloning and expression analysis of a novel human F-box only protein. (PMID: 12243353) Cheng H. … Mao Y. (Mol. Cells 2002) 2 3 4 23
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. Identification of intrahepatic cholangiocarcinoma related genes by comparison with normal liver tissues using expressed sequence tags. (PMID: 16712791) Wang A.G. … Kim N.S. (Biochem. Biophys. Res. Commun. 2006) 3
  4. TLR8-dependent TNF-(alpha) overexpression in Fanconi anemia group C cells. (PMID: 19850743) Vanderwerf S.M. … Bagby G.C. (Blood 2009) 3
  5. DNA sequence and analysis of human chromosome 8. (PMID: 16421571) Nusbaum C. … Lander E.S. (Nature 2006) 4

Products for FBXO16 Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate FBXO16
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for FBXO16
    • Block miRNA regulation of FBXO16 using miScript Target Protectors

    Sources for FBXO16 Gene

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