Aliases for FBXL5 Gene
Aliases for FBXL5 Gene
External Ids for FBXL5 Gene
- HGNC: 13602
- Entrez Gene: 26234
- Ensembl: ENSG00000118564
- OMIM: 605655
- UniProtKB: Q9UKA1
Previous GeneCards Identifiers for FBXL5 Gene
- GC04M015421
- GC04M015548
- GC04M015294
- GC04M015357
- GC04M015282
- GC04M014956
Summaries for FBXL5 Gene
-
This gene encodes a member of the F-box protein family which is characterized by an approximately 40 amino acid motif, the F-box. The F-box proteins constitute one of the four subunits of ubiquitin protein ligase complex called SCFs (SKP1-cullin-F-box), which function in phosphorylation-dependent ubiquitination. The F-box proteins are divided into 3 classes: Fbws containing WD-40 domains, Fbls containing leucine-rich repeats, and Fbxs containing either different protein-protein interaction modules or no recognizable motifs. The protein encoded by this gene belongs to the Fbls class and, in addition to an F-box, contains several tandem leucine-rich repeats. Alternatively spliced transcript variants have been described for this locus. [provided by RefSeq, Aug 2010]
GeneCards Summary for FBXL5 Gene
FBXL5 (F-Box And Leucine Rich Repeat Protein 5) is a Protein Coding gene. Among its related pathways are Chaperonin-mediated protein folding and Innate Immune System. GO annotations related to this gene include ubiquitin-protein transferase activity and iron ion binding.
UniProtKB/Swiss-Prot for FBXL5 Gene
-
Component of some SCF (SKP1-cullin-F-box) protein ligase complex that plays a central role in iron homeostasis by promoting the ubiquitination and subsequent degradation of IREB2/IRP2. Upon high iron and oxygen level, it specifically recognizes and binds IREB2/IRP2, promoting its ubiquitination and degradation by the proteasome. Promotes ubiquitination and subsequent degradation of DCTN1/p150-glued.
No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FBXL5 Gene
Genomics for FBXL5 Gene
Regulatory Elements for FBXL5 Gene
Enhancers for FBXL5 Gene
- Elite enhancer and/or Elite enhancer-gene association
Download GeneHancer data dump
Enhancers around FBXL5 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Location for FBXL5 Gene
- Chromosome:
- 4
- Start:
- 15,604,384 bp from pter
- End:
- 15,681,679 bp from pter
- Size:
- 77,296 bases
- Orientation:
- Minus strand
Genomic View for FBXL5 Gene
Genes around FBXL5 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 4p15.32 by Ensembl
- 4p15.32 by Entrez Gene
- 4p15.32 by HGNC
FBXL5 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for FBXL5 Gene
Proteins for FBXL5 Gene
-
Protein details for FBXL5 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q9UKA1-FBXL5_HUMAN
- Recommended name:
- F-box/LRR-repeat protein 5
- Protein Accession:
- Q9UKA1
- A8MSK4
- B4DIB5
- Q4W5A8
- Q8NHP3
- Q9NXN2
- Q9P0I0
- Q9P0X5
- Q9UJT7
- Q9UKC8
Protein attributes for FBXL5 Gene
- Size:
- 691 amino acids
- Molecular mass:
- 78555 Da
- Quaternary structure:
-
- Part of a SCF (SKP1-cullin-F-box) protein ligase complex. Interacts with ACO1/IRP1, IREB2/IRP2; the interaction depends on the 4Fe-4S cluster. Interacts with DCTN1/p150-glued.
- SequenceCaution:
-
- Sequence=AAF66616.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=AAF67489.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=AAH30656.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=EAW92737.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
Three dimensional structures from OCA and Proteopedia for FBXL5 Gene
Post-translational modifications for FBXL5 Gene
- Polybiquitinated upon iron and oxygen depletion, leading to its degradation by the proteasome. Ubiquitination is regulated by the hemerythrin-like region that acts as an oxygen and iron sensor.
- Modification sites at PhosphoSitePlus
- Modification sites at neXtProt
Other Protein References for FBXL5 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
-
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- Invitrogen Antibodies for FBXL5
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-
Santa Cruz Biotechnology (SCBT) Antibodies for FBXL5
Protein Products
-
OriGene Purified Proteins for FBXL5
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- antibodies-online Proteins for FBXL5: See all 6
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- Search GeneTex for Proteins for FBXL5
Assay Products
- antibodies-online Kits for FBXL5: See all 21
No data available for DME Specific Peptides for FBXL5 Gene
Domains & Families for FBXL5 Gene
Gene Families for FBXL5 Gene
Protein Domains for FBXL5 Gene
- InterPro:
- Blocks:
- ProtoNet:
Suggested Antigen Peptide Sequences for FBXL5 Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
Q9UKA1UniProtKB/Swiss-Prot:
FBXL5_HUMAN :- The hemerythrin-like region acts as an oxygen and iron sensor by binding oxygen through a diiron metal-center. In absence of oxygen and iron, the protein is ubiquitinated and degraded.
- Domain:
-
- The hemerythrin-like region acts as an oxygen and iron sensor by binding oxygen through a diiron metal-center. In absence of oxygen and iron, the protein is ubiquitinated and degraded.
Function for FBXL5 Gene
Molecular function for FBXL5 Gene
- UniProtKB/Swiss-Prot Function:
- Component of some SCF (SKP1-cullin-F-box) protein ligase complex that plays a central role in iron homeostasis by promoting the ubiquitination and subsequent degradation of IREB2/IRP2. Upon high iron and oxygen level, it specifically recognizes and binds IREB2/IRP2, promoting its ubiquitination and degradation by the proteasome. Promotes ubiquitination and subsequent degradation of DCTN1/p150-glued.
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0004842 | ubiquitin-protein transferase activity | TAS | -- |
| GO:0005506 | iron ion binding | IDA | 19762596 |
| GO:0005515 | protein binding | IPI | 17532294 |
| GO:0046872 | metal ion binding | IEA | -- |
Phenotypes for FBXL5 Gene
- MGI mutant phenotypes for FBXL5:
- inferred from 4 alleles
- GenomeRNAi human phenotypes for FBXL5:
-
- Increased vaccinia virus (VACV) infection
- shRNA abundance <= 50%
- Mildly decreased CFP-tsO45G cell surface transport
- Decreased shRNA abundance (Z-score < -2)
- Resistant to vaccinia virus (VACV-A4L) infection
- Increased transferrin (TF) endocytosis
- Increased shRNA abundance (Z-score > 2)
- Increased cell death HMECs cells
- Increased Sindbis virus (SINV) infection
Animal Models for FBXL5 Gene
- MGI Knock Outs for FBXL5:
-
- Fbxl5 tm1Kei
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
-
ViGene Biosciences lentiviral particle packaged cDNA for FBXL5 gene
-
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CRISPR Products
-
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-
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miRNA for FBXL5 Gene
- miRTarBase miRNAs that target FBXL5
-
- hsa-mir-130b-3p (MIRT020243)
- hsa-mir-186-5p (MIRT021148)
- hsa-mir-93-5p (MIRT028097)
- hsa-mir-331-3p (MIRT043479)
- hsa-mir-218-5p (MIRT440661)
- hsa-mir-20a-5p (MIRT440662)
- hsa-mir-106b-5p (MIRT440663)
- hsa-mir-31-3p (MIRT476901)
- hsa-mir-6797-3p (MIRT476902)
- hsa-mir-6076 (MIRT476903)
- hsa-mir-596 (MIRT476904)
- hsa-mir-4796-3p (MIRT476905)
- hsa-mir-548ah-5p (MIRT476906)
- hsa-mir-3609 (MIRT476907)
- hsa-mir-106a-5p (MIRT476908)
- hsa-mir-17-5p (MIRT476909)
- hsa-mir-20b-5p (MIRT476910)
- hsa-mir-519d-3p (MIRT476911)
- hsa-mir-526b-3p (MIRT476912)
- hsa-mir-519c-3p (MIRT485618)
- hsa-mir-519b-3p (MIRT485619)
- hsa-mir-519a-3p (MIRT485620)
- hsa-mir-3934-3p (MIRT502464)
- hsa-mir-767-3p (MIRT502465)
- hsa-mir-6787-3p (MIRT502466)
- hsa-mir-5690 (MIRT502467)
- hsa-mir-203a-3p (MIRT523769)
- hsa-mir-5680 (MIRT523770)
- hsa-mir-4801 (MIRT537454)
- hsa-mir-4731-3p (MIRT537455)
miRNA Products
- Search ViGene Biosciences for FBXL5
Inhibitory RNA Products
- Origene shRNA, siRNA, and RNAi products in human, mouse, rat for FBXL5
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-
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Clone Products
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Cell Line Products
-
Horizon Cell Lines for FBXL5
-
ViGene Biosciences adenoviral particle packaged cDNA for FBXL5 gene
-
ViGene Biosciences lentiviral particle packaged cDNA for FBXL5 gene
-
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Flow Cytometry Products
No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for FBXL5 Gene
Localization for FBXL5 Gene
Subcellular locations from UniProtKB/Swiss-Prot for FBXL5 Gene
- Cytoplasm, perinuclear region.
| Compartment | Confidence |
|---|---|
| cytosol | 5 |
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0000151 | ubiquitin ligase complex | NAS | 10531035 |
| GO:0005737 | cytoplasm | IEA | -- |
| GO:0005829 | cytosol | TAS | -- |
| GO:0019005 | SCF ubiquitin ligase complex | IDA | 19762596 |
| GO:0048471 | perinuclear region of cytoplasm | IEA,IDA | 17532294 |
Pathways & Interactions for FBXL5 Gene
| SuperPathway | Contained pathways | ||
|---|---|---|---|
| 1 | Class I MHC mediated antigen processing and presentation | ||
| 2 | Chaperonin-mediated protein folding |
.94
|
|
| 3 | Innate Immune System |
.61
|
|
| 4 | Metabolism of proteins | ||
Pathways by source for FBXL5 Gene
UniProtKB/Swiss-Prot Q9UKA1-FBXL5_HUMAN
- Pathway: Protein modification; protein ubiquitination.
Interacting Proteins for FBXL5 Gene
Selected Interacting proteins:
ENSP00000344866
Q9UKA1-FBXL5_HUMAN
for FBXL5 Gene via
STRING
MINT
IID
UniProtKB
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0000209 | protein polyubiquitination | TAS | -- |
| GO:0006879 | cellular iron ion homeostasis | TAS | -- |
| GO:0016567 | protein ubiquitination | NAS | 10531035 |
| GO:0031146 | SCF-dependent proteasomal ubiquitin-dependent protein catabolic process | IDA | 17532294 |
| GO:0043687 | post-translational protein modification | TAS | -- |
No data available for SIGNOR curated interactions for FBXL5 Gene
Transcripts for FBXL5 Gene
mRNA/cDNA for FBXL5 Gene
- (8) REFSEQ mRNAs :
- (14) Additional mRNA sequences :
- (292) Selected AceView cDNA sequences:
- (13) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for FBXL5 Gene
CRISPR Products
-
OriGene CRISPR knockouts for FBXL5
-
Santa Cruz Biotechnology (SCBT) CRISPR for FBXL5
- GenScript: Design CRISPR guide RNA sequences for FBXL5
miRNA Products
- Search ViGene Biosciences for FBXL5
Inhibitory RNA Products
- Origene shRNA, siRNA, and RNAi products in human, mouse, rat for FBXL5
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-
ViGene Biosciences ready-to-package AAV shRNAs for FBXL5 gene
Clone Products
- Sino Biological Human cDNA Clone for FBXL5
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Flow Cytometry Products
| ExUns: | 1a | · | 1b | · | 1c | · | 1d | · | 1e | ^ | 2a | · | 2b | · | 2c | · | 2d | ^ | 3 | ^ | 4 | ^ | 5 | ^ | 6a | · | 6b | ^ | 7 | ^ | 8 | ^ | 9 | ^ | 10 | ^ | 11 | ^ | 12a | · | 12b |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SP1: | - | - | |||||||||||||||||||||||||||||||||||||||
| SP2: | - | - | - | ||||||||||||||||||||||||||||||||||||||
| SP3: | - | - | - | - | |||||||||||||||||||||||||||||||||||||
| SP4: | - | - | - | ||||||||||||||||||||||||||||||||||||||
| SP5: | - | - | - | - | |||||||||||||||||||||||||||||||||||||
| SP6: | - | - | - | - | - | ||||||||||||||||||||||||||||||||||||
| SP7: |
Expression for FBXL5 Gene
mRNA expression in embryonic tissues and stem cells from LifeMap Discovery
- Brain (Nervous System)
mRNA differential expression in normal tissues according to GTEx for FBXL5 Gene
This gene is overexpressed in Whole Blood (x7.6).
NURSA nuclear receptor signaling pathways regulating expression of FBXL5 Gene:
FBXL5SOURCE GeneReport for Unigene cluster for FBXL5 Gene:
Hs.643433Evidence on tissue expression from TISSUES for FBXL5 Gene
- Nervous system(4.9)
- Adrenal gland(4.3)
- Intestine(4.3)
Primer Products
-
OriGene qPCR primer pairs and template standards for FBXL5
-
OriGene qPCR primer pairs for FBXL5
No data available for Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for FBXL5 Gene
Orthologs for FBXL5 Gene
This gene was present in the common ancestor of chordates.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | FBXL5 34 35 |
|
||
| dog (Canis familiaris) |
Mammalia | FBXL5 34 35 |
|
||
| cow (Bos Taurus) |
Mammalia | FBXL5 34 35 |
|
||
| mouse (Mus musculus) |
Mammalia | Fbxl5 34 16 35 |
|
||
| rat (Rattus norvegicus) |
Mammalia | Fbxl5 34 |
|
||
| oppossum (Monodelphis domestica) |
Mammalia | FBXL5 35 |
|
OneToOne | |
| platypus (Ornithorhynchus anatinus) |
Mammalia | FBXL5 35 |
|
OneToOne | |
| chicken (Gallus gallus) |
Aves | FBXL5 34 35 |
|
||
| lizard (Anolis carolinensis) |
Reptilia | FBXL5 35 |
|
OneToOne | |
| tropical clawed frog (Silurana tropicalis) |
Amphibia | fbxl5 34 |
|
||
| Str.19634 34 |
|
||||
| African clawed frog (Xenopus laevis) |
Amphibia | fbxl5-prov 34 |
|
||
| zebrafish (Danio rerio) |
Actinopterygii | fbxl5 34 35 |
|
||
| wufb52d06 34 |
|
||||
| rainbow trout (Oncorhynchus mykiss) |
Actinopterygii | Omy.7300 34 |
|
- Species where no ortholog for FBXL5 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- fruit fly (Drosophila melanogaster)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
Paralogs for FBXL5 Gene
Pseudogenes.org Pseudogenes for FBXL5 Gene
No data available for Paralogs for FBXL5 Gene
Variants for FBXL5 Gene
| SNP ID | Clin | Chr 04 pos | Sequence Context | AA Info | Type |
|---|---|---|---|---|---|
| rs864622020 | Uncertain significance | 15,625,448(-) | TTTGT(-/T)GTACA | nc-transcript-variant, reference, frameshift-variant | |
| rs1000022359 | -- | 15,616,003(+) | AGCTT(C/T)ACTCC | intron-variant | |
| rs1000151274 | -- | 15,656,957(+) | CCAGA(A/G)TCATT | intron-variant, upstream-variant-2KB | |
| rs1000174257 | -- | 15,634,352(+) | TCTGA(-/CTAATTT)TTTTT | intron-variant | |
| rs1000185416 | -- | 15,627,530(+) | CTTTT(A/G)TAAAA | intron-variant |
Residual Variation Intolerance Score:
12.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score:
2.78;
47.27% of all genes are more intolerant (likely to be disease-causing)
Relevant External Links for FBXL5 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- FBXL5
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FBXL5 Gene
Disorders for FBXL5 Gene
Relevant External Links for FBXL5
- Atlas of Genetics and Cytogenetics in Oncology and Haematology:
- FBXL5
No disorders were found for FBXL5 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FBXL5 Gene
Publications for FBXL5 Gene
- FBXL5 interacts with p150Glued and regulates its ubiquitination. (PMID: 17532294) Zhang N. … Yao X. (Biochem. Biophys. Res. Commun. 2007) 3 4 22 64
- Identification of a family of human F-box proteins. (PMID: 10531035) Cenciarelli C. … Pagano M. (Curr. Biol. 1999) 2 3 4 64
- Structural and molecular characterization of iron-sensing hemerythrin-like domain within F-box and leucine-rich repeat protein 5 (FBXL5). (PMID: 22253436) Thompson J.W. … Bruick R.K. (J. Biol. Chem. 2012) 3 4 64
- Control of iron homeostasis by an iron-regulated ubiquitin ligase. (PMID: 19762596) Vashisht A.A. … Wohlschlegel J.A. (Science 2009) 3 4 64
- An E3 ligase possessing an iron responsive hemerythrin domain is a regulator of iron homeostasis. (PMID: 19762597) Salahudeen A.A. … Bruick R.K. (Science 2009) 3 4 64
Products for FBXL5 Gene
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- Mammalian expression: PiggyBac
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- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for FBXL5 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
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