Aliases for FBXL3 Gene
Aliases for FBXL3 Gene
External Ids for FBXL3 Gene
- HGNC: 13599
- Entrez Gene: 26224
- Ensembl: ENSG00000005812
- OMIM: 605653
- UniProtKB: Q9UKT7
Previous HGNC Symbols for FBXL3 Gene
- FBXL3A
Previous GeneCards Identifiers for FBXL3 Gene
- GC13M076477
- GC13M077566
- GC13M058277
Summaries for FBXL3 Gene
-
This gene encodes a member of the F-box protein family which is characterized by an approximately 40 amino acid motif, the F-box. The F-box proteins constitute one of the four subunits of ubiquitin protein ligase complex called SCFs (SKP1-cullin-F-box), which function in phosphorylation-dependent ubiquitination. The F-box proteins are divided into 3 classes: Fbws containing WD-40 domains, Fbls containing leucine-rich repeats, and Fbxs containing either different protein-protein interaction modules or no recognizable motifs. The protein encoded by this gene belongs to the Fbls class and, in addition to an F-box, contains several tandem leucine-rich repeats and is localized in the nucleus. [provided by RefSeq, Jul 2008]
GeneCards Summary for FBXL3 Gene
FBXL3 (F-Box And Leucine Rich Repeat Protein 3) is a Protein Coding gene. Among its related pathways are Circadian rythm related genes and Chaperonin-mediated protein folding. GO annotations related to this gene include ubiquitin-protein transferase activity.
UniProtKB/Swiss-Prot for FBXL3 Gene
-
Substrate-recognition component of the SCF(FBXL3) E3 ubiquitin ligase complex involved in circadian rhythm function. Plays a key role in the maintenance of both the speed and the robustness of the circadian clock oscillation (PubMed:17463251, PubMed:23452855, PubMed:27565346). The SCF(FBXL3) complex mainly acts in the nucleus and mediates ubiquitination and subsequent degradation of CRY1 and CRY2 (PubMed:17463251, PubMed:23452855, PubMed:27565346). Activity of the SCF(FBXL3) complex is counteracted by the SCF(FBXL21) complex (PubMed:23452855).
No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FBXL3 Gene
Genomics for FBXL3 Gene
Regulatory Elements for FBXL3 Gene
Enhancers for FBXL3 Gene
| GeneHancer Identifier | Enhancer Score | Enhancer Sources | Gene-Enhancer Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites within enhancer | Gene Targets for Enhancer |
|---|---|---|---|---|---|---|---|---|
| GH13G076990 | 1.1 | ENCODE | 14.5 | +34.5 | 34455 | 3.8 | HDGF PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF143 ZNF207 | FBXL3 CLN5 ENSG00000283208 MYCBP2-AS1 |
| GH13G077025 | 1 | ENCODE | 14.9 | +0.4 | 356 | 3.5 | HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A FEZF1 YY1 ZNF766 ZNF207 | FBXL3 MYCBP2-AS2 CLN5 MYCBP2-AS1 |
| GH13G077696 | 1 | ENCODE | 12.1 | -670.6 | -670635 | 3.5 | HDGF PKNOX1 ARNT SIN3A FEZF1 BRCA1 GLIS2 ZNF143 ZNF263 SP3 | CLN5 FBXL3 RPL31P54 SLAIN1 LOC100129307 |
| GH13G076980 | 1.1 | Ensembl ENCODE | 10.3 | +46.9 | 46896 | 0.6 | ARNT FUS ARID4B ZNF48 RAD21 GLIS2 ZNF143 CREM MIXL1 EGR2 | FBXL3 GC13M076982 ACOD1 |
| GH13G077324 | 1.7 | FANTOM5 ENCODE dbSUPER | 4.1 | -299.1 | -299109 | 3.1 | HDGF PKNOX1 MLX ARNT WRNIP1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 | MYCBP2 CLN5 FBXL3 KCTD12 GC13P077273 |
- Elite enhancer and/or Elite enhancer-gene association
Download GeneHancer data dump
Enhancers around FBXL3 on UCSC Golden Path with GeneCards custom track
- Transcription factor binding sites by QIAGEN in the FBXL3 gene promoter:
Regulatory Element Products
Genomic Location for FBXL3 Gene
- Chromosome:
- 13
- Start:
- 76,992,598 bp from pter
- End:
- 77,027,196 bp from pter
- Size:
- 34,599 bases
- Orientation:
- Minus strand
Genomic View for FBXL3 Gene
Genes around FBXL3 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 13q22.3 by Ensembl
- 13q22.3 by Entrez Gene
- 13q22.3 by HGNC
FBXL3 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for FBXL3 Gene
Proteins for FBXL3 Gene
-
Protein details for FBXL3 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q9UKT7-FBXL3_HUMAN
- Recommended name:
- F-box/LRR-repeat protein 3
- Protein Accession:
- Q9UKT7
- B2RB04
- Q9P122
Protein attributes for FBXL3 Gene
- Size:
- 428 amino acids
- Molecular mass:
- 48707 Da
- Quaternary structure:
-
- Part of the SCF (SKP1-CUL1-F-box) E3 ubiquitin-protein ligase complex SCF(FBXL3) composed of CUL1, SKP1, RBX1 and FBXL3. Interacts with CRY1 and CRY2 (phosphorylated).
Protein Expression for FBXL3 Gene
Post-translational modifications for FBXL3 Gene
Other Protein References for FBXL3 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
-
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- GeneTex FBXL3 antibody for FBXL3
Protein Products
-
OriGene Purified Proteins for FBXL3
- Search Origene for MassSpec and Protein Over-expression Lysates for FBXL3
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- antibodies-online Proteins for FBXL3: See all 5
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- Search GeneTex for Proteins for FBXL3
Assay Products
- antibodies-online Kits for FBXL3: See all 24
No data available for DME Specific Peptides for FBXL3 Gene
Domains & Families for FBXL3 Gene
Gene Families for FBXL3 Gene
Protein Domains for FBXL3 Gene
- InterPro:
- ProtoNet:
Suggested Antigen Peptide Sequences for FBXL3 Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
No data available for UniProtKB/Swiss-Prot for FBXL3 Gene
Function for FBXL3 Gene
Molecular function for FBXL3 Gene
- UniProtKB/Swiss-Prot Function:
- Substrate-recognition component of the SCF(FBXL3) E3 ubiquitin ligase complex involved in circadian rhythm function. Plays a key role in the maintenance of both the speed and the robustness of the circadian clock oscillation (PubMed:17463251, PubMed:23452855, PubMed:27565346). The SCF(FBXL3) complex mainly acts in the nucleus and mediates ubiquitination and subsequent degradation of CRY1 and CRY2 (PubMed:17463251, PubMed:23452855, PubMed:27565346). Activity of the SCF(FBXL3) complex is counteracted by the SCF(FBXL21) complex (PubMed:23452855).
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0004842 | ubiquitin-protein transferase activity | TAS | -- |
| GO:0005515 | protein binding | IPI | 17463251 |
Phenotypes for FBXL3 Gene
- MGI mutant phenotypes for FBXL3:
- inferred from 7 alleles
- GenomeRNAi human phenotypes for FBXL3:
Animal Model Products
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-
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CRISPR Products
-
OriGene CRISPR knockouts for FBXL3
-
Santa Cruz Biotechnology (SCBT) CRISPR for FBXL3
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miRNA for FBXL3 Gene
- miRTarBase miRNAs that target FBXL3
-
- hsa-mir-340-5p (MIRT019641)
- hsa-mir-186-5p (MIRT021110)
- hsa-mir-93-5p (MIRT028091)
- hsa-mir-410-3p (MIRT114154)
- hsa-mir-18a-5p (MIRT114158)
- hsa-mir-18b-5p (MIRT114159)
- hsa-mir-4735-3p (MIRT114167)
- hsa-let-7c-3p (MIRT190091)
- hsa-let-7g-3p (MIRT507312)
- hsa-let-7a-2-3p (MIRT507313)
- hsa-mir-190a-3p (MIRT507314)
- hsa-mir-4760-3p (MIRT507315)
- hsa-mir-4528 (MIRT507316)
- hsa-mir-493-5p (MIRT507318)
- hsa-mir-6885-3p (MIRT542967)
- hsa-mir-1273e (MIRT542968)
- hsa-mir-203a-3p (MIRT542969)
- hsa-mir-6864-3p (MIRT703624)
- hsa-mir-3672 (MIRT703625)
- hsa-mir-196a-3p (MIRT703626)
- hsa-mir-873-3p (MIRT703627)
- hsa-mir-3128 (MIRT703628)
- hsa-mir-8073 (MIRT703629)
- hsa-mir-221-5p (MIRT703630)
- hsa-mir-759 (MIRT703631)
- hsa-mir-5586-3p (MIRT703632)
- hsa-mir-4797-5p (MIRT703633)
miRNA Products
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Inhibitory RNA Products
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-
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-
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Flow Cytometry Products
No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for FBXL3 Gene
Localization for FBXL3 Gene
Subcellular locations from UniProtKB/Swiss-Prot for FBXL3 Gene
- Nucleus. Cytoplasm. Note=Predominantly nuclear.
| Compartment | Confidence |
|---|---|
| nucleus | 5 |
| cytosol | 5 |
| golgi apparatus | 1 |
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0000151 | ubiquitin ligase complex | NAS | 10531035 |
| GO:0005634 | nucleus | ISS | -- |
| GO:0005737 | cytoplasm | IEA | -- |
| GO:0005829 | cytosol | TAS | -- |
| GO:0016604 | nuclear body | IDA | -- |
Pathways & Interactions for FBXL3 Gene
| SuperPathway | Contained pathways | ||
|---|---|---|---|
| 1 | Class I MHC mediated antigen processing and presentation | ||
| 2 | Chaperonin-mediated protein folding |
.94
|
|
| 3 | Circadian rhythm |
.30
|
|
| 4 | BMAL1-CLOCK,NPAS2 activates circadian gene expression |
.68
|
|
| 5 | Innate Immune System |
.61
|
|
Pathways by source for FBXL3 Gene
1 BioSystems pathway for FBXL3 Gene
1 KEGG pathway for FBXL3 Gene
UniProtKB/Swiss-Prot Q9UKT7-FBXL3_HUMAN
- Pathway: Protein modification; protein ubiquitination.
Interacting Proteins for FBXL3 Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0000209 | protein polyubiquitination | TAS | -- |
| GO:0016567 | protein ubiquitination | NAS | 10531035 |
| GO:0031146 | SCF-dependent proteasomal ubiquitin-dependent protein catabolic process | IDA | 17463251 |
| GO:0031648 | protein destabilization | IEA,ISS | -- |
| GO:0042752 | regulation of circadian rhythm | IMP | 17463251 |
No data available for SIGNOR curated interactions for FBXL3 Gene
Transcripts for FBXL3 Gene
mRNA/cDNA for FBXL3 Gene
- (4) REFSEQ mRNAs :
- (7) Additional mRNA sequences :
- (202) Selected AceView cDNA sequences:
- (6) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for FBXL3 Gene
CRISPR Products
-
OriGene CRISPR knockouts for FBXL3
-
Santa Cruz Biotechnology (SCBT) CRISPR for FBXL3
- GenScript: Design CRISPR guide RNA sequences for FBXL3
miRNA Products
- Search ViGene Biosciences for FBXL3
Inhibitory RNA Products
- Origene shRNA, siRNA, and RNAi products in human, mouse, rat for FBXL3
- Browse OriGene Inhibitory RNA Products For FBXL3
-
ViGene Biosciences ready-to-package AAV shRNAs for FBXL3 gene
Clone Products
-
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Flow Cytometry Products
| ExUns: | 1a | · | 1b | · | 1c | ^ | 2 | ^ | 3 | ^ | 4a | · | 4b | · | 4c | ^ | 5a | · | 5b | · | 5c | ^ | 6a | · | 6b | ^ | 7a | · | 7b |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SP1: | - | ||||||||||||||||||||||||||||
| SP2: | - | - | - | - | |||||||||||||||||||||||||
| SP3: | - | - | |||||||||||||||||||||||||||
| SP4: | - | - | - | ||||||||||||||||||||||||||
| SP5: | - | - | |||||||||||||||||||||||||||
| SP6: |
Expression for FBXL3 Gene
mRNA expression in embryonic tissues and stem cells from LifeMap Discovery
This gene is overexpressed in Testis (24.6), Ovary (20.1), Gallbladder (15.0), and Blymphocyte (9.4).
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for FBXL3 Gene
- Elite partner
NURSA nuclear receptor signaling pathways regulating expression of FBXL3 Gene:
FBXL3SOURCE GeneReport for Unigene cluster for FBXL3 Gene:
Hs.508284mRNA Expression by UniProt/SwissProt for FBXL3 Gene:
Q9UKT7-FBXL3_HUMAN
Tissue specificity:
Widely expressed.
Evidence on tissue expression from TISSUES for FBXL3 Gene
- Skin(4.2)
- Nervous system(4.2)
Primer Products
-
OriGene qPCR primer pairs and template standards for FBXL3
-
OriGene qPCR primer pairs for FBXL3
No data available for mRNA differential expression in normal tissues and Phenotype-based relationships between genes and organs from Gene ORGANizer for FBXL3 Gene
Orthologs for FBXL3 Gene
This gene was present in the common ancestor of chordates.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | FBXL3 34 35 |
|
||
| cow (Bos Taurus) |
Mammalia | FBXL3 35 |
|
OneToOne | |
| oppossum (Monodelphis domestica) |
Mammalia | FBXL3 35 |
|
OneToOne | |
| dog (Canis familiaris) |
Mammalia | FBXL3 34 35 |
|
||
| mouse (Mus musculus) |
Mammalia | Fbxl3 34 16 35 |
|
||
| platypus (Ornithorhynchus anatinus) |
Mammalia | FBXL3 35 |
|
OneToOne | |
| rat (Rattus norvegicus) |
Mammalia | Fbxl3 34 |
|
||
| chicken (Gallus gallus) |
Aves | FBXL3 34 |
|
||
| lizard (Anolis carolinensis) |
Reptilia | FBXL3 35 |
|
OneToOne | |
| tropical clawed frog (Silurana tropicalis) |
Amphibia | fbxl3 34 |
|
||
| Str.9980 34 |
|
||||
| African clawed frog (Xenopus laevis) |
Amphibia | Xl.10201 34 |
|
||
| zebrafish (Danio rerio) |
Actinopterygii | fbxl3a 35 |
|
OneToMany | |
| LOC504112 34 |
|
||||
| fbxl3b 35 |
|
OneToMany | |||
| rainbow trout (Oncorhynchus mykiss) |
Actinopterygii | Omy.14083 34 |
|
- Species where no ortholog for FBXL3 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- fruit fly (Drosophila melanogaster)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
Paralogs for FBXL3 Gene
(1) SIMAP similar genes for FBXL3 Gene using alignment to 2 proteins:
Pseudogenes.org Pseudogenes for FBXL3 Gene
No data available for Paralogs for FBXL3 Gene
Variants for FBXL3 Gene
| SNP ID | Clin | Chr 13 pos | Sequence Context | AA Info | Type |
|---|---|---|---|---|---|
| rs104894385 | Pathogenic | 76,992,176(+) | TCCTG(A/G/T)TGCTG | downstream-variant-500B, reference, missense | |
| rs104894386 | Pathogenic | 76,995,077(+) | CTTCC(A/C/G)TCCAA | intron-variant, reference, missense | |
| rs148862100 | Pathogenic | 77,000,866(+) | GTTTT(A/G)TAATT | intron-variant, reference, missense, utr-variant-3-prime | |
| rs267606738 | Pathogenic | 76,995,119(+) | TTTCT(A/G)TCCAA | intron-variant, reference, missense | |
| rs28940280 | Pathogenic | 77,000,580(+) | CCTAC(A/G)ACTGT | intron-variant, reference, missense, utr-variant-3-prime |
Residual Variation Intolerance Score:
22.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score:
0.15;
3.30% of all genes are more intolerant (likely to be disease-causing)
Relevant External Links for FBXL3 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- FBXL3
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FBXL3 Gene
Disorders for FBXL3 Gene
Relevant External Links for FBXL3
- Atlas of Genetics and Cytogenetics in Oncology and Haematology:
- FBXL3
No disorders were found for FBXL3 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FBXL3 Gene
Publications for FBXL3 Gene
- Five human genes encoding F-box proteins: chromosome mapping and analysis in human tumors. (PMID: 10828603) Chiaur D.S. … Pagano M. (Cytogenet. Cell Genet. 2000) 2 3 22 64
- Identification of a family of human F-box proteins. (PMID: 10531035) Cenciarelli C. … Pagano M. (Curr. Biol. 1999) 2 3 4 64
- SCFFbxl3 controls the oscillation of the circadian clock by directing the degradation of cryptochrome proteins. (PMID: 17463251) Busino L. … Pagano M. (Science 2007) 3 4 64
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
- A Cryptochrome 2 mutation yields advanced sleep phase in humans. (PMID: 27529127) Hirano A. … Fu Y.H. (Elife 2016) 3 64
Products for FBXL3 Gene
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- antibodies-online Antibodies for FBXL3: See all 62
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- antibodies-online Proteins for FBXL3: See all 5
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- Mammalian expression: PiggyBac
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- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for FBXL3 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
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