FBXL19-AS1 Gene
RNA gene GIFtS: 27
GCID: GC16M030932
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FBXL19 antisense RNA 1 (head to head)(Previous names: non-protein coding RNA 95, FBXL19 antisense RNA 1 (non-protein...)
(Previous symbol: NCRNA00095)
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Aliases
for FBXL19-AS1 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
Subcategory (RNA class): lncRNA
Quality score for this RNA gene is 3
| Aliases |
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| FBXL19 Antisense RNA 1 (Head To Head)1 2 | | MGC1254721 | | NCRNA000951 2 3 | | FBXL19 Antisense RNA 1 (Non-Protein Coding)1 | | FBXL19 Antisense RNA 11 3 | | Non-Protein Coding RNA 951 | | MGC1254691 | | FBXL19 Antisense Gene Protein 13 | | MGC1254701 | | |
| External Ids: | HGNC: 275571 | Entrez Gene: 2839322 | Ensembl: ENSG000002608527 | UniProtKB: Q494R03 | | ORGUL members: | |
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| NONCODE:n406866 | |
Export aliases for FBXL19-AS1 gene to outside databasesPrevious GC identifer: GC16M030931
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Summaries
for FBXL19-AS1 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
-- |
Genomic Views
for FBXL19-AS1 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000016.9 NC_018927.1 NT_010393.16
Regulatory elements:
 Search SABiosciences Regulatory transcription factor binding sites for FBXL19-AS1
Other transcription factors
Search SABiosciences Chromatin IP Primers for FBXL19-AS1
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat FBXL19-AS1 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 16p11.2 Ensembl cytogenetic band: 16p11.2 HGNC cytogenetic band: 16p11.2FBXL19-AS1 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 16 GeneLoc Exon Structure GeneLoc location for GC16M030932: view genomic region
(about GC identifiers)
Start:
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30,930,640 bp from pter |
End:
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30,934,590 bp from pter |
Size:
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3,951 bases |
Orientation:
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minus strand |
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Proteins
for FBXL19-AS1 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
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UniProtKB/Swiss-Prot: FBAS1_HUMAN, Q494R0 (See
protein sequence)Recommended Name: Putative uncharacterized protein FBXL19-AS1 Size: 122 amino acids; 13218 Da
Caution: Product of a dubious CDS prediction. Probable non-coding RNA
Secondary accessions: Q3KR42 Q8NAQ9Explore the universe of human proteins at neXtProt for FBXL19-AS1: NX_Q494R0
FBXL19-AS1 Protein expression data from MOPED and PaxDb: --
Human Recombinant Protein Products for FBXL19-AS1:
FBXL19-AS1 Antibody Products:
Assay Products for FBXL19-AS1: |
Protein
Domains /
Families
for FBXL19-AS1 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| ProtoNet protein and cluster: Q494R0 |
Function
for FBXL19-AS1 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase,
shRNA from
OriGene,
Sirion Biotech,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Sirion Biotech,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
Sirion Biotech,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
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Animal Models:
In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for FBXL19-AS1 |
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Pathways & Interactions
for FBXL19-AS1 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
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Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for FBXL19-AS1
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Drugs & Compounds
for FBXL19-AS1 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for FBXL19-AS1
Search CenterWatch for drugs/clinical trials and news about FBXL19-AS1 
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Transcripts
for FBXL19-AS1 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
Sirion Biotech,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
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REFSEQ mRNAs for FBXL19-AS1 gene: NM_175901.3 Unigene Cluster for FBXL19-AS1: FBXL19 antisense RNA 1 (head to head) Hs.711535 [show with all ESTs]Unigene Representative Sequence: NR_0243481 Ensembl transcript including schematic representation, and UCSC links where relevant: ENST00000563777(uc002dzy.2)
Primer
Products: |  | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for FBXL19-AS1
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse / rat FBXL19-AS1 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat FBXL19-AS1 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat FBXL19-AS1 |
Additional cDNA sequence: AK090544.1 AK092263.1 BC101464.1 BC101988.1 BC105687.1 BC105926.1 NR_024348.1 1 DOTS entry: DT.97800001 12 AceView cDNA sequences: NM_175901 BX641974 AX747439 BI325012 AK090544 AK092263 BE384747 AW176596 BX641975 BQ217225 BI438270 BF771557
GeneLoc Exon Structure
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Expression
for FBXL19-AS1 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| Expression evidence for FBXL19-AS1:none
FBXL19-AS1 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: GGATGTGTAG
About this image
Genevestigator expression for FBXL19-AS1
SOURCE GeneReport for Unigene cluster: Hs.711535
SABiosciences Custom PCR Arrays for FBXL19-AS1
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for FBXL19-AS1
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse / rat FBXL19-AS1 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat FBXL19-AS1 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat FBXL19-AS1 | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for FBXL19-AS1 |
Orthologs
for FBXL19-AS1 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
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ENSEMBL Gene Tree for FBXL19-AS1 (if available)
TreeFam Gene Tree for FBXL19-AS1 (if available) |
Paralogs
for FBXL19-AS1 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
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Genomic Variants
for FBXL19-AS1 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
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| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 16 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
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HapMap Linkage Disequilibrium report for FBXL19-AS1 (30930640 - 30934590 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for FBXL19-AS1: -- | SABiosciences Cancer Mutation PCR Assays |
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Disorders
/ Diseases
for FBXL19-AS1 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
| -- |
Publications
for FBXL19-AS1 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
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PubMed articles for FBXL19-AS1 gene integrated from 9 sources:
(articles sorted by number of sources associating them with FBXL19-AS1) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
- Purification of CpG islands using a methylated DNA binding column. (PubMed id 8012384)1 Cross S.H.... Bird A.P. (1994)
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External Searches for FBXL19-AS1 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
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Genome Databases showing FBXL19-AS1 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
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Other Databases showing FBXL19-AS1 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing FBXL19-AS1 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for FBXL19-AS1 | Pharmacogenomics, SNPs, Pathways |
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About This Section
| Patent Information for FBXL19-AS1 gene:
Search GeneIP for patents involving FBXL19-AS1
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for FBXL19-AS1 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, LifeMap BioReagents, and Sirion Biotech, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory)
About This Section
|
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|  | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat FBXL19-AS1 | | | Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing FBXL19-AS1 | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat FBXL19-AS1 | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat FBXL19-AS1 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat FBXL19-AS1 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat FBXL19-AS1 |
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 | | | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for FBXL19-AS1 |
|  |  |  |  | | | | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat FBXL19-AS1 |
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Last full update: 18 Mar 2013 -
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