FBXL17 Gene
protein-coding GIFtS : 44
GCID: GC05 M107223
F-box and leucine-rich repeat protein 17 (Previous name: F-box only protein 13 ) (Previous symbol: FBXO13 )
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Aliasesfor FBXL17 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases F-Box And Leucine-Rich Repeat Protein 17 1 2 3 FBL173 5 FBXO131 2 3 5 FBX133 5 F-Box Only Protein 131 2 3 DKFZP434C17151 Fbl171 2 F-Box/LRR-Repeat Protein 172 Fbx131 2
Export aliases for FBXL17 gene to outside databases Previous GC identifers: GC05M107271 GC05M102367
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Summariesfor FBXL17 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for FBXL17 : Members of the F-box protein family, such as FBXL17, are characterized by an approximately 40-amino acid F-box motif. SCF complexes, formed by SKP1 (MIM 601434), cullin (see CUL1; MIM 603134), and F-box proteins, act as protein-ubiquitin ligases. F-box proteins interact with SKP1 through the F box, and they interact with ubiquitination targets through other protein interaction domains (Jin et al., 2004 (PubMed 15520277)).(supplied by OMIM, Mar 2008) UniProtKB/Swiss-Prot: FXL17_HUMAN, Q9UF56 Function : Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex (Bysimilarity)
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Genomic Viewsfor FBXL17 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000005.9 NC_018916.1 NT_034772.6 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the FBXL17 gene promoter: c-Fos AREB6 Elk-1 AP-1 Sp1 COMP1 c-Jun Ik-3 C/EBPalpha Other transcription factors Search SABiosciences Chromatin IP Primers for FBXL17 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat FBXL17
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 5q21.3 Ensembl cytogenetic band: 5q21.3 HGNC cytogenetic band: 5q21.3 FBXL17 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 5 GeneLoc Exon Structure
GeneLoc location for GC05M107223: view genomic region
(about GC identifiers )
Start:
107,194,734 bp from pter
End:
107,717,799 bp from pter
Size:
523,066 bases
Orientation:
minus strand
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Proteinsfor FBXL17 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: FXL17_HUMAN, Q9UF56 (See
protein sequence )Recommended Name: F-box/LRR-repeat protein 17 Size : 701 amino acids; 75695 Da
Subunit : Interacts with SKP1 and CUL1 (By similarity)
Secondary accessions : A1A4E3Alternative splicing : 3 isoforms : Q9UF56-1 Q9UF56-3 Q9UF56-2 (No experimental confirmation available)Explore the universe of human proteins at neXtProt for FBXL17: NX_Q9UF56 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q9UF56 FBXL17 Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins: NP_001156787.2 ENSEMBL proteins: ENSP00000352683 ENSP00000418111 ENSP00000437464 Human Recombinant Protein Products: FBXL17 Antibody Products: Assay Products for FBXL17:
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Protein
Domains / Familiesfor FBXL17 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
FBXL17 for domains About GeneDecksing 1 InterPro domain/family :
Graphical View of Domain Structure for InterPro Entry Q9UF56 ProtoNet protein and cluster: Q9UF56
UniProtKB/Swiss-Prot: FXL17_HUMAN, Q9UF56 Similarity : Contains 1 F-box domain
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Functionfor FBXL17 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: FXL17_HUMAN, Q9UF56 Function : Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex (Bysimilarity)
Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for FBXL17 (see all 4 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for FBXL17 (see all 2 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: FBXL17 (NM_001163315 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for FBXL17 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat FBXL17
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for FBXL17
3 GenomeRNAi human phenotypes for FBXL17 :
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Pathways & Interactionsfor FBXL17 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for FBXL17 STRING Interaction
Network Preview (showing 2 interactants - click image to see more details)2 Interacting proteins for FBXL17 (ENSP00000418111 4 ) via UniProtKB, MINT, STRING , and/or I2D About this table
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Drugs & Compoundsfor FBXL17 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for FBXL17 Search CenterWatch for drugs/clinical trials and news about FBXL17 / FXL17
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Transcriptsfor FBXL17 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
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SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for FBXL17 gene (2 alternative transcripts): NM_022824.1 NM_001163315.2 Unigene Cluster for FBXL17:
F-box and leucine-rich repeat protein 17 Hs.657225 [show with all ESTs ] Unigene Representative Sequence: NM_001163315 5 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000359660 ENST00000496714 (uc003kon.4 ) ENST00000481160 ENST00000518486 ENST00000542267 (uc011cvc.2 ) Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for FBXL17 (see all 4 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for FBXL17 (see all 2 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: FBXL17 (NM_001163315 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for FBXL17 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat FBXL17
Additional cDNA sequence: AB533280.1 AK126722.1 AK172822.1 AL133602.1 BC018548.2 BC126144.1 BC126146.1
5 DOTS entries : DT.452070 DT.95219556
DT.92042073 DT.40259668 DT.91752406 24/71 AceView cDNA sequences (see all 71 ):
AA687884 AW002313 AI127909 H93512 BM720801 BM676904 BC018548 AA804434 BM023593 BM021542 AA988642 BM353053 AA605275 AA532453 BM677076 AW630872 BF437214 BX487603 AI359105 CB242339 BF531122 BU167043 N34057 BE379607 GeneLoc Exon Structure
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Expression for FBXL17 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section FBXL17 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: TGAACACGTT
About this image FBXL17 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table See FBXL17 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for FBXL17 SOURCE GeneReport for Unigene cluster: Hs.657225 SABiosciences Custom PCR Arrays for FBXL17 Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for FBXL17Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat FBXL17 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat FBXL17 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat FBXL17 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for FBXL17
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Orthologsfor FBXL17 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of eukaryotes.
Orthologs for FBXL17 gene from 6/14 species (see all 14 ) About this table
ENSEMBL Gene Tree for FBXL17 (if available)TreeFam Gene Tree for FBXL17 (if available)
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Paralogsfor FBXL17 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for FBXL17 gene FBXL2 2 FBXL20 2 ENSG00000237102 2 FBXL13 2 FBXL16 2 FBXL7 2 AMN1 2 LRRC29 2 FBXL15 2 FBXL4 2 FBXL14 2
FBXL17 for paralogs About GeneDecksing
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Genomic Variantsfor FBXL17 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 5 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for FBXL17 (107194734 - 107444734 bp, first 250kb of FBXL17)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 7 variations for FBXL17 4 CNVs : 6434 36331 99248 99247 3 Indels : 46744 64270 40791
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing FBXL17
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Disorders
/ Diseasesfor FBXL17 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
FBXL17 for disorders About GeneDecksing
OMIM gene information: 609083
OMIM disorders : --1 disease for FBXL17 : About MalaCards breast cancer Human Genome Epidemiology (HuGE) Navigator: FBXL17 (2 documents) Export disorders for FBXL17 gene to outside databases
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Publicationsfor FBXL17 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for FBXL17 gene, integrated from 9 sources (see all 13 ): (articles sorted by number of sources associating them with FBXL17) Utopia : connect your pdf to the dynamic world of online information
Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 1 , 2 Ota T.... Sugano S. (2004) Functional dissection of lysine deacetylases reveals t hat HDAC1 and p300 regulate AMPK. (PubMed id 22318606) 1 Lin Y.Y....Boeke J.D. (2012) Systematic and quantitative assessment of the ubiquiti n-modified proteome. (PubMed id 21906983) 1 Kim W....Gygi S.P. (2011) Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614) 1 Rose J.E....Uhl G.R. (2010) Replication of previous genome-wide association studi es of bone mineral density in premenopausal American women. (PubMed id 20200978) 1 Ichikawa S....Econs M.J. (2010) Dynamics of cullin-RING ubiquitin ligase network revea led by systematic quantitative proteomics. (PubMed id 21145461) 1 Bennett E.J....Harper J.W. (2010) Identification of F-box/LLR-repeated protein 17 as potential useful biomarker for breast cancer therapy. (PubMed id 18820369) 1 Xiao G.G....Yen Y. (2008) The full-ORF clone resource of the German cDNA consortium. (PubMed id 17974005) 2 Bechtel S.... Schupp I. (2007) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 2 Gerhard D.S....Malek J. (2004) The DNA sequence and comparative analysis of human chromosome 5. (PubMed id 15372022) 2 Schmutz J.... Rubin E.M. (2004)
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External Searches for FBXL17 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing FBXL17 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing FBXL17 gene
(According to HUGE )
About This Section --
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Specialized Databases showing FBXL17 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for FBXL17 Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for FBXL17 gene: Search GeneIP for patents involving FBXL17 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor FBXL17 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies OriGene shRNA RFP for FBXL17 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for FBXL17 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for FBXL17 OriGene Protein Over-expression Lysate for FBXL17 Browse OriGene Fluorogenic Cell Assay Kits Browse OriGene siRNAs OriGene 3'-UTR Clone for FBXL17 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for FBXL17 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for FBXL17 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for FBXL17 OriGene Custom Protein Services for FBXL17 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat FBXL17 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing FBXL17 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat FBXL17 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat FBXL17 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat FBXL17 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat FBXL17
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FBXL17 Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for FBXL17
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Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat FBXL17
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