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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

FBLN1 Gene

protein-coding   GIFtS: 63
GCID: GC22P045898

fibulin 1

 Explore 26 diseases affiliated with
FBLN1 via our new
 Human Malady Compendium 
Biological research products
for FBLN1
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Fibulin 11 2
FBLN1 2
FIBL12
Fibulin-11
FIBL-13

External Ids:    HGNC: 36001   Entrez Gene: 21922   Ensembl: ENSG000000779427   OMIM: 1358205   UniProtKB: P231423   

Export aliases for FBLN1 gene to outside databases

Previous GC identifers: GC22P042534 GC22P044175 GC22P044219 GC22P028859


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for FBLN1:
Fibulin 1 is a secreted glycoprotein that becomes incorporated into a fibrillar extracellular matrix. Calcium-binding
is apparently required to mediate its binding to laminin and nidogen. It mediates platelet adhesion via binding
fibrinogen. Four splice variants which differ in the 3' end have been identified. Each variant encodes a different
isoform, but no functional distinctions have been identified among the four variants. (provided by RefSeq, Jul 2008)

UniProtKB/Swiss-Prot: FBLN1_HUMAN, P23142
Function: Incorporated into fibronectin-containing matrix fibers. May play a role in cell adhesion and migration along
protein fibers within the extracellular matrix (ECM). Could be important for certain developmental processes and
contribute to the supramolecular organization of ECM architecture, in particular to those of basement membranes. Has
been implicated in a role in cellular transformation and tumor invasion, it appears to be a tumor suppressor. May play
a role in haemostasis and thrombosis owing to its ability to bind fibrinogen and incorporate into clots. Could play a
significant role in modulating the neurotrophic activities of APP, particularly soluble APP

Gene Wiki entry for FBLN1


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000022.10  NC_018933.1  NT_011520.12  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the FBLN1 gene promoter:
         AP-2alpha isoform 3   AP-2alpha isoform 2   AP-2alpha   AP-2alphaA   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidFBLN1 promoter sequence
   Search SABiosciences Chromatin IP Primers for FBLN1

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat FBLN1


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 22q13.31   Ensembl cytogenetic band:  22q13.31   HGNC cytogenetic band: 22q13.31

FBLN1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
FBLN1 gene location

GeneLoc information about chromosome 22         GeneLoc Exon Structure

GeneLoc location for GC22P045898:  view genomic region     (about GC identifiers)

Start:
45,898,118 bp from pter      End:
45,997,015 bp from pter
Size:
98,898 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: FBLN1_HUMAN, P23142 (See protein sequence)
Recommended Name: Fibulin-1 precursor  
Size: 703 amino acids; 77214 Da
Subunit: Homomultimerizes and interacts with various extracellular matrix components such as FN1, LAMA1, LAMA2, NID,
ACAN, CSPG2 and type IV collagen. Interacts also with APP, NOV, FGB and HPV type 16, HPV type 18, HPV type 31 and BPV
type 1 E6 proteins. Interacts with FBLN7 (By similarity)
Subcellular location: Secreted, extracellular space, extracellular matrix
Developmental stage: Widely expressed during embryonic development. Prominent in the matrix of the leptomeningeal
anlage, in basement membranes of the neuroepithelium and the perineurium of peripheral nerves. In embryos of
gestational week (gw) 4, staining was observed in the early mesenchymal bone anlagen. In gw 6.5 and 8, all
perichondrial structures showed expression but the chondrocytes themselves showed no staining. In gw 10, expression is
prominent in the interterritorial matrix surrounding the hypertrophic chondrocytes
Sequence caution: Sequence=AAG17241.1; Type=Frameshift; Positions=116, 619, 639;
Secondary accessions: B0QY42 P23143 P23144 P37888 Q5TIC4 Q8TBH8 Q9HBQ5 Q9UC21 Q9UGR4 Q9UH41
Alternative splicing: 4 isoforms:  P23142-1   P23142-2   P23142-3   P23142-4   (Ref.4 (AAG17241) sequence is in conflict in positions: 650:E->K, 662:L->F, 680:SAE->FAK)

Explore the universe of human proteins at neXtProt for FBLN1: NX_P23142

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_P23142

  • FBLN1 Protein expression data from MOPED and PaxDb:    About this image 
    FBLN1 Protein Expression
    REFSEQ proteins (4 alternative transcripts): 
    NP_001987.2  NP_006476.2  NP_006477.2  NP_006478.2  

    ENSEMBL proteins: 
     ENSP00000415289   ENSP00000404024   ENSP00000402963   ENSP00000385521   ENSP00000262722  
     ENSP00000331544   ENSP00000393812   ENSP00000342212   ENSP00000395329   ENSP00000396084  
     ENSP00000414584   ENSP00000415160   ENSP00000401077   ENSP00000262723  
    Reactome Protein details: P23142
    Human Recombinant Protein Products for FBLN1: 
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    Novus Biologicals FBLN1 Proteins
    Novus Biologicals FBLN1 Lysates
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    Browse ProSpec Recombinant Proteins
    Uscn Proteins for FBLN1

    Gene Ontology (GO): 5/6 cellular component terms (GO ID links to tree view) (see all 6):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005576extracellular region NAS14718574
    GO:0005578proteinaceous extracellular matrix TAS2269669
    GO:0005604basement membrane IEA--
    GO:0005615extracellular space IDA--
    GO:0005625soluble fraction ----

    FBLN1 for ontologies           About GeneDecksing



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    Uscn ELISAs and CLIAs for FBLN1


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    FBLN1 for domains           About GeneDecksing

    5/8 InterPro domains/families (see all 8):
     IPR000742 EG-like_dom
     IPR026823 cEGF
     IPR000152 EGF-type_Asp/Asn_hydroxyl_site
     IPR018097 EGF_Ca-bd_CS
     IPR001881 EGF-like_Ca-bd

    Graphical View of Domain Structure for InterPro Entry P23142

    ProtoNet protein and cluster: P23142

    2 Blocks protein families:
    IPB000152 Aspartic acid and asparagine hydroxylation site
    IPB001881 EGF-like calcium-binding


    UniProtKB/Swiss-Prot: FBLN1_HUMAN, P23142
    Similarity: Belongs to the fibulin family
    Similarity: Contains 3 anaphylatoxin-like domains
    Similarity: Contains 9 EGF-like domains


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, Sirion Biotech, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, Sirion Biotech, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Molecular Function:

         UniProtKB/Swiss-Prot Summary: FBLN1_HUMAN, P23142
    Function: Incorporated into fibronectin-containing matrix fibers. May play a role in cell adhesion and migration along
    protein fibers within the extracellular matrix (ECM). Could be important for certain developmental processes and
    contribute to the supramolecular organization of ECM architecture, in particular to those of basement membranes. Has
    been implicated in a role in cellular transformation and tumor invasion, it appears to be a tumor suppressor. May play
    a role in haemostasis and thrombosis owing to its ability to bind fibrinogen and incorporate into clots. Could play a
    significant role in modulating the neurotrophic activities of APP, particularly soluble APP
    Induction: Expression increased by estrogen in ovarian cancer cells

         Genatlas biochemistry entry for FBLN1:
    fibulin 1,calcium binding,extracellular matrix protein (90-100kDa),prominently expressed in endocardium during
    development

         Gene Ontology (GO): 4 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005201extracellular matrix structural constituent TAS2269669
    GO:0005509calcium ion binding IEA--
    GO:0005515protein binding ----
    GO:0016504peptidase activator activity IEA--
         
    FBLN1 for ontologies           About GeneDecksing


    Phenotypes:
         4 GenomeRNAi human phenotypes for FBLN1:
     Decreased viability of wild-ty  Decreased viability with carbo  Decreased viability with pacli  High actin ratio cells 

         15 MGI mutant phenotypes (inferred from 2 alleles(MGI details for Fbln1):
     cardiovascular system  craniofacial  embryogenesis  endocrine/exocrine gland  growth/size 
     hearing/vestibular/ear  hematopoietic system  immune system  integument  limbs/digits/tail 
     mortality/aging  nervous system  renal/urinary system  respiratory system  skeleton 

    FBLN1 for phenotypes           About GeneDecksing

    Animal Models:
         Mouse knock-out Fbln1tm1Tmpl for FBLN1
       inGenious Targeting Laboratory - Customizable classic, inducible, and humanized mouse model solutions for FBLN1 

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    SwitchGear 3'UTR luciferase reporter plasmidFBLN1 3' UTR sequence
    Inhib. RNA
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    In Situ Assay
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for FBLN1


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways  About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1Cell adhesion_Cell-matrix glycoconjugates
    Cell adhesion_Cell-matrix glycoconjugates1.00
    Cell adhesion Cell-matrix glycoconjugates0.97
    2Elastic fibre formation
    Elastic fibre formation1.00
    Molecules associated with elastic fibres0.84
    3Collagen formation
    Extracellular matrix organization0.54

    Pathway sources
    See GeneCards unified pathways
    Show all pathways

    1 EMD Millipore Pathway for FBLN1
        Cell adhesion Cell-matrix glycoconjugates


    1 GeneGo (Thomson Reuters) Pathway for FBLN1
        Cell adhesion Cell-matrix glycoconjugates

    3        Reactome Pathways for FBLN1
        Molecules associated with elastic fibres
    Extracellular matrix organization
    Elastic fibre formation



    FBLN1 for pathways           About GeneDecksing

    Interactions:

        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for FBLN1

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    5/44 Interacting proteins for FBLN1 (P231422, 3 ENSP000003315444) via UniProtKB, MINT, STRING, and/or I2D (see all 44)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    GFI1BQ5VTD92, 3, ENSP000003447824MINT-2858799 I2D: score=3 STRING: ENSP00000344782
    ATN1P542592, 3, ENSP000003490764MINT-2858780 MINT-2858761 I2D: score=3 STRING: ENSP00000349076
    SKILP127572, 3, ENSP000002591194MINT-61641 I2D: score=3 STRING: ENSP00000259119
    SMAD4Q134852, 3, ENSP000003415514MINT-61947 I2D: score=3 STRING: ENSP00000341551
    APPP050673, ENSP000002849814I2D: score=3 STRING: ENSP00000284981
    About this table

    Gene Ontology (GO): 5 biological process terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0007566embryo implantation IEA--
    GO:0010952positive regulation of peptidase activity ----
    GO:0019048virus-host interaction IEA--
    GO:0030198extracellular matrix organization IEA--
    GO:0044419interspecies interaction between organisms ----

    FBLN1 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section

    FBLN1 for compounds           About GeneDecksing

    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for FBLN1
    8 Novoseek chemical compound relationships for FBLN1 gene    About this table
    Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    neurocan 72.1 1 10400671 (1)
    matrigel 31.1 2 17483339 (2)
    estrogen 28.2 9 9811350 (3), 9699869 (1), 9841098 (1), 10465000 (1) (see all 6)
    estradiol 28.1 7 9466671 (4), 11850827 (2), 8552629 (1)
    fibrinogen 24.9 28 8839849 (8), 7642629 (7), 19693531 (5), 9278415 (1)
    progesterone 21.8 5 15774544 (2), 9811350 (1), 14503970 (1), 10465000 (1)
    calcium 9.4 10 9278415 (5), 8737292 (1), 9299350 (1), 15556863 (1)
    heparin 0 1 11733994 (1)

    Search CenterWatch for drugs/clinical trials and news about FBLN1 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, Sirion Biotech, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for FBLN1 gene (4 alternative transcripts): 
    NM_001996.3  NM_006485.3  NM_006486.2  NM_006487.2  

    Unigene Cluster for FBLN1:

    Fibulin 1
    Hs.24601  [show with all ESTs]
    Unigene Representative Sequence: AK128725
    18/19 Ensembl transcripts including schematic representations, and UCSC links where relevant (see all 19):
    ENST00000411478 ENST00000445110 ENST00000455233 ENST00000402984(uc010gzz.3)
    ENST00000262722(uc003bgh.3) ENST00000327858(uc003bgj.1) ENST00000442170(uc003bgi.1)
    ENST00000340923(uc003bgg.1) ENST00000439835 ENST00000450975 ENST00000454279
    ENST00000451475 ENST00000437711 ENST00000460538 ENST00000465578 ENST00000484531
    ENST00000476366 ENST00000460300

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    Additional cDNA sequence: 

    AF126110.1 AF217999.1 AK075460.1 AK075566.1 AK093339.1 AK095988.1 AK128725.1 AK300806.1 
    AK316291.1 BC022497.1 BC131605.1 U01244.1 X53741.1 X53742.1 X53743.1 

    24/77 DOTS entries (see all 77):

    DT.100842172  DT.91774959  DT.100890902  DT.100890919  DT.86854843  DT.100890993  DT.87078245  DT.100773181 
    DT.100890966  DT.100890953  DT.100840815  DT.100045388  DT.100890926  DT.100890964  DT.100833913  DT.100890994 
    DT.100890974  DT.120662483  DT.100890931  DT.120662380  DT.120662400  DT.100890927  DT.100891020  DT.120662497 

    24/1331 AceView cDNA sequences (see all 1331):

    AW189603 BQ673107 CR609828 BU608490 BU849638 BQ573892 H55193 R41668 
    AA347515 CR621956 CR601756 F05479 CR620925 BQ669357 AA972861 D58449 
    AI167845 BG827383 AW069207 AI251132 BU553363 CR599841 BF992494 CA488527 

    GeneLoc Exon Structure

    5/9 Alternative Splicing Database (ASD) splice patterns (SP) for FBLN1 (see all 9)    About this scheme

    ExUns: 1a · 1b ^ 2 ^ 3 ^ 4a · 4b ^ 5a · 5b ^ 6 ^ 7a · 7b ^ 8a · 8b ^ 9a · 9b · 9c ^ 10a · 10b ^ 11 ^ 12 ^ 13 ^ 14 ^ 15a · 15b ^ 16 ^ 17 ^
    SP1:                    -                                   -                                   -                                                     -     -   
    SP2:                    -           -     -                 -                                   -                                                     -     -   
    SP3:                                                        -                                   -                                                     -         
    SP4:                    -                                   -                                   -                                                     -         
    SP5:                    -                                   -                                   -                                                     -     -   

    ExUns: 18 ^ 19 ^ 20a · 20b ^ 21 ^ 22a · 22b
    SP1:  -                       -               
    SP2:  -                       -               
    SP3:                                          
    SP4:                                          
    SP5:                                          


    ECgene alternative splicing isoforms for FBLN1

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    FBLN1 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: CAGCTGGCCA
    FBLN1 Expression
    About this image

    FBLN1 expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table

    4 LifeMap In Vivo Development Anatomical Compartments/Cells 
    Tissue Anatomical Compartment CellCategory (developmental path)
    HeartAtrioventricular Endocardial CushionEndocardial Cushion CellsEndocardium
    Gut TubeMidgutMidgut Endoderm CellsEndoderm
    BrainMeningesBrain
    Gut TubeMidgutGut Tube
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization
    Stem Cell Differentiation: 2 LifeMap Cells 
    NameCategory
    PureStem™ progenitor EN7 (Embryonic Progenitor Cell)
    N2/LSB/S/F8/CHIR-induced cells (Generation of midbra...)

    See FBLN1 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for FBLN1

    SOURCE GeneReport for Unigene cluster: Hs.24601

    UniProtKB/Swiss-Prot: FBLN1_HUMAN, P23142
    Tissue specificity: Isoform A and isoform B are only expressed in placenta. Isoform C and isoform D are expressed in a
    variety of tissues and cultured cells

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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of animals.

    Orthologs for FBLN1 gene from 6/21 species (see all 21)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chicken
    (Gallus gallus)
    Aves FBLN11 fibulin 1 71.97(n)
    74.13(a)
      373979  NM_204165.1  NP_989496.1 
    lizard
    (Anolis carolinensis)
    Reptilia FBLN16
    --
    72(a)
    1 ↔ 1
    5(84104288-84190007)
    African clawed frog
    (Xenopus laevis)
    Amphibia Xl.150542 Xenopus laevis, clone IMAGE4888121, mRNA 78.09(n)    BC043745.1 
    zebrafish
    (Danio rerio)
    Actinopterygii fbln12 fibulin 1 76.62(n)   30240  AF013751.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta CG319996
    --
    18(a)
    possible ortholog
    4(235635-246582)
    worm
    (Caenorhabditis elegans)
    Secernentea fbl-11 Protein FBL-1 44.17(n)
    37.73(a)
      177788  NM_001028066.3  NP_001023237.1 


    ENSEMBL Gene Tree for FBLN1 (if available)
    TreeFam Gene Tree for FBLN1 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for FBLN1 gene
    FBN12  LTBP32  SCUBE32  FBN32  FBLN52  FBN22  LTBP42  EFEMP12  
    SCUBE12  EFEMP22  LTBP22  LTBP12  FBLN22  SCUBE22  
    13 SIMAP similar genes for FBLN1 using alignment to 12 protein entries:     FBLN1_HUMAN (see all proteins):
    DKFZp762L185    F9    PROS1    NELL2    DKFZp586A1519    HMCN2
    FBN3    FBLN7    FBLN5    FBLN2    HMCN1    MBP1
    EFEMP2

    FBLN1 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/2249 NCBI SNPs in FBLN1 are shown (see all 2249    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 22 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs754045331,2
    C--28843498(+) TCTTGC/ACTTTT 4 -- us2k12Minor allele frequency- A:0.08WA 120
    rs622249981,2
    C,F--28843512(+) TAAATG/AGAATC 4 -- us2k15Minor allele frequency- A:0.08NA WA EA 362
    rs1124286301,2
    C--28843563(+) ACTTAC/TGTCTG 4 -- us2k12Minor allele frequency- T:0.05CSA WA 120
    rs738899911,2
    C--28843683(+) CCCAAT/CTGGAG 4 -- us2k12Minor allele frequency- C:0.02WA 120
    rs1139110311,2
    --28843777(+) GGCGTC/TGGTGG 4 -- us2k12Minor allele frequency- T:0.05CSA WA 120
    rs72921071,2
    C,F--28844100(+) TGTTGG/ACCTGG 4 -- us2k11Minor allele frequency- A:0.04WA 118
    rs96146901,2
    C,F--28844204(+) CGGGGT/ATGGCG 4 -- us2k16Minor allele frequency- A:0.35NA CSA WA EA 363
    rs1129262641,2
    --28845074(+) AAGAGC/TAGATC 4 -- int12Minor allele frequency- T:0.02CSA WA 120
    rs60070651,2
    F,H--28845193(+) GGGGGA/CCTGCC 4 -- int16Minor allele frequency- C:0.07NS EA WA NA 656
    rs738899991,2
    C--28845924(+) GCCCCG/CGAGTC 4 -- int12Minor allele frequency- C:0.06WA 120

    HapMap Linkage Disequilibrium report for FBLN1 (45898118 - 45997015 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 10 variations for FBLN1
         4 CNVs: 8906 31097 4132 3244
         6 Indels: 41780 12267 46239 42294 12268 103195
    Human Gene Mutation Database (HGMD): FBLN1

    SABiosciences Cancer Mutation PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    FBLN1 for disorders           About GeneDecksing

    OMIM gene information: 135820   
    OMIM disorders: 608180  
    UniProtKB/Swiss-Prot: FBLN1_HUMAN, P23142
  • Note=A chromosomal aberration involving FBLN1 is found in a complex type of synpolydactyly referred to as
  • 3/3-prime/4 synpolydactyly associated with metacarpal and metatarsal synostoses. Reciprocal translocation
    t(12;22)(p11.2;q13.3) with RASSF8. Fibroblasts derived from a patient with synpolydactyly displayed alterations in the
    level of isoform D splice variant incorporated into the ECM and secreted into the conditioned culture medium. By
    contrast, the expression of isoform C was not perturbed in the patients fibroblasts. Furthermore, no aberrant
    polypeptides were detected in extracts of cultured patients fibroblasts. The translocation t(12;22) may result in
    haploinsufficiency of the isoform D splice variant, which could lead to the observed limb malformation
  • Note=Elevated expression and altered processing of FBLN1 protein is associated with human breast cancer

  • 20/26 diseases for FBLN1 (see all 26):    About MalaCards
    synpolydactyly, 3/34, associated with metacarpal and metatarsal synostoses    megalencephalic leukoencephalopathy with subcortical cysts    synpolydactyly 3    synpolydactyly
    dupuytren contracture    vitreoretinal dystrophy    macular degeneration    epithelial ovarian cancer
    ovarian cancer    multiple sclerosis    breast cancer    fibrosarcoma
    liver disease    leiomyoma    thrombosis    hepatocellular carcinoma
    choroiditis    gastric cancer    pharyngitis    carcinoma

    1 disease from the University of Copenhagen DISEASES database for FBLN1:
    Vitreoretinal dystrophy

    8 Novoseek disease relationships for FBLN1 gene    About this table

    Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    ovarian cancer 34.7 9 8552629 (4), 9699869 (1), 9841098 (1), 11850827 (1)
    breast carcinoma 28.7 6 12858331 (2), 14691454 (2), 12160330 (1)
    breast cancer 23 18 17483339 (4), 14691454 (3), 12858331 (2), 15528301 (2) (see all 9)
    cysts 9.35 1 8552629 (1)
    metastasis 7.64 1 8552629 (1)
    tumors 6.31 12 18222970 (3), 9811350 (2), 9466671 (2), 12200142 (1) (see all 6)
    carcinoma 5.25 4 9811350 (2), 17929269 (1), 7534784 (1)
    cancer 1.74 8 11829738 (1), 9811350 (1), 12858331 (1), 17929269 (1) (see all 6)

    Human Genome Epidemiology (HuGE) Navigator: FBLN1 (3 documents)

    Export disorders for FBLN1 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for FBLN1 gene, integrated from 9 sources (see all 133):
    (articles sorted by number of sources associating them with FBLN1)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Fibulin binds to itself and to the carboxyl-terminal heparin-binding region of fibronectin. (PubMed id 1400330)1, 2, 3 Balbona K....Argraves W.S. (1992)
    2. Fibulin is an extracellular matrix and plasma glycoprotein with repeated domain structure. (PubMed id 2269669)1, 2, 3 Argraves W.S.... Dickerson K. (1990)
    3. The interaction of fibulin-1 with fibrinogen. A potential role in hemostasis and thrombosis. (PubMed id 7642629)1, 2, 9 Tran H....Argraves W.S. (1995)
    4. The self-association and fibronectin-binding sites of fibulin-1 map to calcium-binding epidermal growth factor-like domains. (PubMed id 9278415)1, 2, 9 Tran H.... Argraves W.S. (1997)
    5. Increased immunostaining of fibulin-1, an estrogen-regulated protein in the stroma of human ovarian epithelial tumors. (PubMed id 9811350)1, 2, 9 Roger P.... Rochefort H. (1998)
    6. Interaction of oncogenic papillomavirus E6 proteins with fibulin-1. (PubMed id 12200142)1, 2, 9 Du M.... Chen J.J. (2002)
    7. Estradiol and fibulin-1 inhibit motility of human ovarian- and breast-cancer cells induced by fibronectin. (PubMed id 9466671)1, 2, 9 Hayashido Y....Rochefort H. (1998)
    8. The association of human fibulin-1 with elastic fibers: an immunohistological, ultrastructural, and RNA study. (PubMed id 7534784)1, 2, 9 Roark E.F....Argraves W.S. (1995)
    9. Human fibulin-1D: molecular cloning, expression and similarity with S1-5 protein, a new member of the fibulin gene family. (PubMed id 9106159)1, 2, 9 Tran H.... Argraves W.S. (1997)
    10. Estrogens increase the expression of fibulin-1, an extracellular matrix protein secreted by human ovarian cancer cells. (PubMed id 8552629)1, 2, 9 Clinton G.M.... Rochefort H. (1996)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Disorders
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 2192 HGNC: 3600 AceView: FBLN1 Ensembl:ENSG00000077942 euGenes: HUgn2192
    ECgene: FBLN1 H-InvDB: FBLN1

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for FBLN1 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for FBLN1 gene:
    Search GeneIP for patents involving FBLN1

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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