Aliases for FAT2 Gene
Aliases for FAT2 Gene
External Ids for FAT2 Gene
- HGNC: 3596
- Entrez Gene: 2196
- Ensembl: ENSG00000086570
- OMIM: 604269
- UniProtKB: Q9NYQ8
Previous GeneCards Identifiers for FAT2 Gene
- GC05M150952
- GC05M151480
- GC05M150912
- GC05M150863
- GC05M146029
- GC05M150883
Summaries for FAT2 Gene
-
This gene is the second identified human homolog of the Drosophila fat gene, which encodes a tumor suppressor essential for controlling cell proliferation during Drosophila development. The gene product is a member of the cadherin superfamily, a group of integral membrane proteins characterized by the presence of cadherin-type repeats. In addition to containing 34 tandem cadherin-type repeats, the gene product has two epidermal growth factor (EGF)-like repeats and one laminin G domain. This protein most likely functions as a cell adhesion molecule, controlling cell proliferation and playing an important role in cerebellum development. [provided by RefSeq, Jul 2008]
GeneCards Summary for FAT2 Gene
FAT2 (FAT Atypical Cadherin 2) is a Protein Coding gene. Diseases associated with FAT2 include Skin Squamous Cell Carcinoma and Spinal Canal And Spinal Cord Meningioma. GO annotations related to this gene include calcium ion binding. An important paralog of this gene is FAT1.
UniProtKB/Swiss-Prot for FAT2 Gene
-
Plays a role in the migration of epidermal cells. May modulate the extracellular space surronding parallel fibers of cerebellar during development (By similarity).
No data available for CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAT2 Gene
Genomics for FAT2 Gene
Regulatory Elements for FAT2 Gene
Enhancers for FAT2 Gene
- Elite enhancer and/or Elite enhancer-gene association
Download GeneHancer data dump
Enhancers around FAT2 on UCSC Golden Path with GeneCards custom track
- Transcription factor binding sites by QIAGEN in the FAT2 gene promoter:
Regulatory Element Products
Genomic Location for FAT2 Gene
- Chromosome:
- 5
- Start:
- 151,504,092 bp from pter
- End:
- 151,652,140 bp from pter
- Size:
- 148,049 bases
- Orientation:
- Minus strand
Genomic View for FAT2 Gene
Genes around FAT2 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 5q33.1 by Ensembl
- 5q33.1 by Entrez Gene
- 5q33.1 by HGNC
FAT2 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for FAT2 Gene
Proteins for FAT2 Gene
-
Protein details for FAT2 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q9NYQ8-FAT2_HUMAN
- Recommended name:
- Protocadherin Fat 2
- Protein Accession:
- Q9NYQ8
- O75091
- Q9NSR7
Protein attributes for FAT2 Gene
- Size:
- 4349 amino acids
- Molecular mass:
- 479317 Da
- Quaternary structure:
-
- Homodimer.
Protein Expression for FAT2 Gene
Post-translational modifications for FAT2 Gene
- Glycosylation at Asn39, isoforms=210, isoforms=280, isoforms=330, Asn459, isoforms=568, isoforms=627, isoforms=655, isoforms=789, Asn996, Asn1175, Asn1383, Asn1417, Asn1904, isoforms=1998, Asn2007, isoforms=2165, Asn2183, Asn2325, isoforms=2368, isoforms=2387, Asn2430, isoforms=2470, Asn2547, isoforms=2597, isoforms=2654, isoforms=3125, Asn3276, Asn3310, Asn3430, Asn3471, Asn3601, isoforms=3772, Asn3813, Asn3840, Asn3873, isoforms=3904, Asn3989, and Thr4036
- Modification sites at PhosphoSitePlus
Other Protein References for FAT2 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
- Novus Biologicals Antibodies for FAT2
- Search GeneTex for Antibodies for FAT2
-
Santa Cruz Biotechnology (SCBT) Antibodies for FAT2
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for FAT2
- Origene Custom Protein Services for FAT2
- Search GeneTex for Proteins for FAT2
Assay Products
No data available for DME Specific Peptides for FAT2 Gene
Domains & Families for FAT2 Gene
Gene Families for FAT2 Gene
- HGNC:
Protein Domains for FAT2 Gene
- InterPro:
- Blocks:
- ProtoNet:
Suggested Antigen Peptide Sequences for FAT2 Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
No data available for UniProtKB/Swiss-Prot for FAT2 Gene
Function for FAT2 Gene
Molecular function for FAT2 Gene
- GENATLAS Biochemistry:
- Drosophila FAT tumor suppressor,homolog 2
- UniProtKB/Swiss-Prot Function:
- Plays a role in the migration of epidermal cells. May modulate the extracellular space surronding parallel fibers of cerebellar during development (By similarity).
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005509 | calcium ion binding | IEA | -- |
Phenotypes for FAT2 Gene
- MGI mutant phenotypes for FAT2:
- inferred from 1 alleles
- GenomeRNAi human phenotypes for FAT2:
-
- Mitotic spindle defects
- Increased viability
- Increased gamma-H2AX phosphorylation
- Decreased hepcidin::fluc mRNA expression
- shRNA abundance <= 50%
- Decreased viability in esophageal squamous lineage
- Increased shRNA abundance (Z-score > 2)
- Decreased viability ratio
- Decreased shRNA abundance (Z-score < -2)
- Decreased NF-kappaB reporter expression
- Increased transferrin (TF) endocytosis
- Decreased viability after Maraba virus infection
- Increased HPV18 LCR reporter activity
Animal Models for FAT2 Gene
- MGI Knock Outs for FAT2:
-
- Fat2 tm1Anjm
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
-
ViGene Biosciences lentiviral particle packaged cDNA for FAT2 gene
-
ViGene Biosciences ready-to-package AAV shRNAs for FAT2 gene
- Search ViGene Biosciences for FAT2
CRISPR Products
-
OriGene CRISPR knockouts for FAT2
-
Santa Cruz Biotechnology (SCBT) CRISPR for FAT2
- GenScript: Design CRISPR guide RNA sequences for FAT2
miRNA for FAT2 Gene
- miRTarBase miRNAs that target FAT2
miRNA Products
- Search ViGene Biosciences for FAT2
Inhibitory RNA Products
- Origene RNAi, siRNA, and shRNA products in human, mouse, rat for FAT2
- Browse OriGene Inhibitory RNA Products For FAT2
-
ViGene Biosciences ready-to-package AAV shRNAs for FAT2 gene
Clone Products
Cell Line Products
-
Horizon Cell Lines for FAT2
-
ViGene Biosciences adenoviral particle packaged cDNA for FAT2 gene
-
ViGene Biosciences lentiviral particle packaged cDNA for FAT2 gene
-
ViGene Biosciences ready-to-package AAV shRNAs for FAT2 gene
Flow Cytometry Products
No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for FAT2 Gene
Localization for FAT2 Gene
Subcellular locations from UniProtKB/Swiss-Prot for FAT2 Gene
- Cell membrane; Single-pass type I membrane protein. Cell junction. Nucleus. Note=Localized at adhesion zippers (early state of adherens junctions) of keratinocytes.
| Compartment | Confidence |
|---|---|
| extracellular | 5 |
| plasma membrane | 4 |
| nucleus | 3 |
| peroxisome | 1 |
| endoplasmic reticulum | 1 |
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005634 | nucleus | IEA | -- |
| GO:0005886 | plasma membrane | IEA | -- |
| GO:0005913 | cell-cell adherens junction | IDA | 17900869 |
| GO:0016020 | membrane | IEA | -- |
| GO:0016021 | integral component of membrane | IEA | -- |
Pathways & Interactions for FAT2 Gene
No Data Available
Interacting Proteins for FAT2 Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0007155 | cell adhesion | IEA | -- |
| GO:0007156 | homophilic cell adhesion via plasma membrane adhesion molecules | ISS | -- |
| GO:0010631 | epithelial cell migration | IMP | 17900869 |
No data available for Pathways by source and SIGNOR curated interactions for FAT2 Gene
Transcripts for FAT2 Gene
mRNA/cDNA for FAT2 Gene
- (8) REFSEQ mRNAs :
- (8) Additional mRNA sequences :
- (66) Selected AceView cDNA sequences:
- (2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for FAT2 Gene
CRISPR Products
-
OriGene CRISPR knockouts for FAT2
-
Santa Cruz Biotechnology (SCBT) CRISPR for FAT2
- GenScript: Design CRISPR guide RNA sequences for FAT2
miRNA Products
- Search ViGene Biosciences for FAT2
Inhibitory RNA Products
- Origene RNAi, siRNA, and shRNA products in human, mouse, rat for FAT2
- Browse OriGene Inhibitory RNA Products For FAT2
-
ViGene Biosciences ready-to-package AAV shRNAs for FAT2 gene
Clone Products
Flow Cytometry Products
| ExUns: | 1 | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5 | ^ | 6 | ^ | 7 | ^ | 8 | ^ | 9 | ^ | 10 | ^ | 11 | ^ | 12 | ^ | 13 | ^ | 14 | ^ | 15 | ^ | 16 | ^ | 17 | ^ | 18 | ^ | 19 | ^ | 20a | · | 20b | ^ | 21 | ^ | 22 | ^ | 23 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SP1: | |||||||||||||||||||||||||||||||||||||||||||||||
| SP2: | - |
Expression for FAT2 Gene
mRNA expression in embryonic tissues and stem cells from LifeMap Discovery
- Brain (Nervous System)
- Gut Tube (Gastrointestinal Tract)
- Neural Tube (Nervous System)
- Bone (Muscoskeletal System)
mRNA differential expression in normal tissues according to GTEx for FAT2 Gene
This gene is overexpressed in Brain - Cerebellum (x17.9), Brain - Cerebellar Hemisphere (x15.9), and Esophagus - Mucosa (x4.8).
This gene is overexpressed in Plasma (42.3) and Serum (25.3).
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for FAT2 Gene
NURSA nuclear receptor signaling pathways regulating expression of FAT2 Gene:
FAT2SOURCE GeneReport for Unigene cluster for FAT2 Gene:
Hs.591255mRNA Expression by UniProt/SwissProt for FAT2 Gene:
Q9NYQ8-FAT2_HUMAN
Tissue specificity:
Expressed in epidermal keratinocytes, infant brain, cerebellum, and also in a variety of tumors, such as pancreatic cancer, diffuse type gastric cancer, ovarian cancer, esophageal cancer, skin squamous cell carcinoma, head and neck cancer. Not expressed in melanoma cell line A375 cells, normal epidermal melanocytes or normal dermal fibroblasts. Expressed in epidermal keratinocytes and squamous cell carcinoma (at protein level).
Evidence on tissue expression from TISSUES for FAT2 Gene
- Nervous system(4.6)
- Bone marrow(4)
Primer Products
-
OriGene qPCR primer pairs for FAT2
No data available for Phenotype-based relationships between genes and organs from Gene ORGANizer for FAT2 Gene
Orthologs for FAT2 Gene
This gene was present in the common ancestor of animals.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | FAT2 34 35 |
|
||
| dog (Canis familiaris) |
Mammalia | FAT2 34 35 |
|
||
| cow (Bos Taurus) |
Mammalia | FAT2 34 35 |
|
||
| mouse (Mus musculus) |
Mammalia | Fat2 34 16 35 |
|
||
| rat (Rattus norvegicus) |
Mammalia | Fat2 34 |
|
||
| oppossum (Monodelphis domestica) |
Mammalia | FAT2 35 |
|
OneToOne | |
| platypus (Ornithorhynchus anatinus) |
Mammalia | FAT2 35 |
|
OneToOne | |
| chicken (Gallus gallus) |
Aves | FAT2 34 35 |
|
||
| lizard (Anolis carolinensis) |
Reptilia | FAT2 35 |
|
OneToOne | |
| tropical clawed frog (Silurana tropicalis) |
Amphibia | fat2 34 |
|
||
| zebrafish (Danio rerio) |
Actinopterygii | fat2 34 35 |
|
||
| fruit fly (Drosophila melanogaster) |
Insecta | kug 35 |
|
OneToMany | |
| CadN 36 |
|
|
|||
| ft 36 |
|
|
- Species where no ortholog for FAT2 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rainbow trout (Oncorhynchus mykiss)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
Paralogs for FAT2 Gene
(10) SIMAP similar genes for FAT2 Gene using alignment to 4 proteins:
Variants for FAT2 Gene
| SNP ID | Clin | Chr 05 pos | Sequence Context | AA Info | Type |
|---|---|---|---|---|---|
| rs138209662 | Uncertain significance | 151,568,002(+) | AACTC(A/G)TTGCT | nc-transcript-variant, reference, synonymous-codon | |
| rs863223397 | Uncertain significance | 151,566,159(-) | CCCAG(C/T)GCATC | nc-transcript-variant, reference, missense | |
| rs1000074856 | -- | 151,580,737(+) | GGGTG(A/G)GTGTG | intron-variant | |
| rs1000141941 | -- | 151,553,873(+) | AGTGT(C/G)GTCGA | intron-variant | |
| rs1000190201 | -- | 151,557,066(+) | CACCA(C/G)GAGCA | intron-variant |
Residual Variation Intolerance Score:
85.6% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score:
28.44;
99.86% of all genes are more intolerant (likely to be disease-causing)
Relevant External Links for FAT2 Gene
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FAT2 Gene
Disorders for FAT2 Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| skin squamous cell carcinoma |
|
|
| spinal canal and spinal cord meningioma |
|
|
| spinal meningioma |
|
|
| spinal cancer |
|
|
Search FAT2 in MalaCards
View complete list of genes associated with diseases
Relevant External Links for FAT2
- Atlas of Genetics and Cytogenetics in Oncology and Haematology:
- FAT2
No data available for UniProtKB/Swiss-Prot and Genatlas for FAT2 Gene
Publications for FAT2 Gene
- Identification of high-molecular-weight proteins with multiple EGF- like motifs by motif-trap screening. (PMID: 9693030) Nakayama M. … Ohara O. (Genomics 1998) 2 3 4 64
- Human Fat2 is localized at immature adherens junctions in epidermal keratinocytes. (PMID: 17900869) Matsui S. … Matsuyoshi N. (J. Dermatol. Sci. 2007) 3 4 64
- Human plasma N-glycoproteome analysis by immunoaffinity subtraction, hydrazide chemistry, and mass spectrometry. (PMID: 16335952) Liu T. … Smith R.D. (J. Proteome Res. 2005) 3 4 64
- Large exons encoding multiple ectodomains are a characteristic feature of protocadherin genes. (PMID: 10716726) Wu Q. … Maniatis T. (Proc. Natl. Acad. Sci. U.S.A. 2000) 3 4 64
- Initial characterization of the human central proteome. (PMID: 21269460) Burkard T.R. … Colinge J. (BMC Syst. Biol. 2011) 4 64
Products for FAT2 Gene
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- Browse R&D Systems for biochemical assays
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- Novus Biologicals Antibodies for FAT2
- Novus Biologicals
- Novus Biologicals Tissue Microarrays
- ViGene Biosciences adenoviral particle packaged cDNA for FAT2 gene
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- Search ViGene Biosciences for FAT2
- Santa Cruz Biotechnology (SCBT) Antibodies for FAT2
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- Horizon Cell Lines for FAT2
- Cyagen custom Knockout/knockin (KOKI) mouse models for FAT2
- VectorBuilder custom plasmid, inducible vectors for FAT2
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for FAT2
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for FAT2 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
- (83) fRNAdb
- (84) DISEASES
- (85) SIMAP
- (86) GenomeRNAi
- (87) LifeMap
- (88) miRTarBase
- (89) MalaCards
- (90) Invitrogen
- (91) BitterDB
- (92) Vector BioLabs
- (93) ESI-BIO
- (94) RefSeq
- (95) BioSystems
- (96) MaxQB
- (97) IUPHAR
- (98) BioGPS
- (99) Illumina
- (100) COMPARTMENTS
- (101) HOMER
- (102) PaxDb
- (103) ApexBio
- (104) Addgene
- (105) antibodies-online
- (106) CYP
- (107) NONCODE
- (108) SwitchGear Genomics
- (109) TreeFam
- (110) PathCards
- (111) GeneReviews
- (112) GeneTex
- (113) Taconic Biosciences
- (114) GTEx
- (115) ProteomicsDB
- (116) SCBT
- (117) DGIdb
- (118) ClinicalTrials
- (119) FDA Approved Drugs
- (120) RVIS
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- (122) diseasecard
- (123) NIH Rare Diseases
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- (127) Disease Ontology
- (128) Genetics Home Reference
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- (130) MedlinePlus
- (131) CDC
- (132) NINDS
- (133) NCBI Bookshelf
- (134) ClinVar
- (135) Gene Damage Index
- (136) ViGene Biosciences
- (137) HPO
- (138) UDN
- (139) VISTA
- (140) FANTOM5
- (141) ENCODE
- (142) ProSci
- (143) Horizon
- (144) NURSA
- (145) IID
- (146) Cyagen
- (147) VectorBuilder
- (148) SNPedia
- (149) BRCA Exchange
- (150) St John's Lab
- (151) CIViC
- (152) ProteoGenix
- (153) dbSUPER
- (154) TISSUES
- (155) Gene ORGANizer