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FAT1 Gene

protein-coding   GIFtS: 56

GC04M187746
FAT tumor suppressor homolog 1 (Drosophila)
(Previous name: FAT tumor suppressor (Drosophila) homolog )
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
(Previous symbol: FAT)
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
About This Section

Aliases
CDHF7 1, 2, 3
FAT 2, 3, 5
ME5 2
hFat1 2
Descriptions
Cadherin-related tumor suppressor homolog 3
FAT tumor suppressor (Drosophila) homolog 1
FAT tumor suppressor 1 2
FAT tumor suppressor homolog 1 (Drosophila) 2
Protein fat homolog 3
cadherin ME5 2
cadherin family member 7 2
cadherin-related tumor suppressor 2
External Ids
HGNC: 35951
Entrez Gene: 21952
UniProtKB: Q145173
Ensembl: ENSG000000838577
Search outside databases for aliases for FAT1 gene

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

EntrezGene summary for FAT1:
This gene is an ortholog of the Drosophila fat gene, which encodes a tumor suppressor essential for
controlling cell proliferation during Drosophila development. The gene product is a member of the
cadherin superfamily, a group of integral membrane proteins characterized by the presence of
cadherin-type repeats. In addition to containing 34 tandem cadherin-type repeats, the gene product
has five epidermal growth factor (EGF)-like repeats and one laminin A-G domain. This gene is
expressed at high levels in a number of fetal epithelia. Its product probably functions as an
adhesion molecule and/or signaling receptor, and is likely to be important in developmental
processes and cell communication. Transcript variants derived from alternative splicing and/or
alternative promoter usage exist, but they have not been fully described. [provided by RefSeq]

UniProtKB/Swiss-Prot: FAT1_HUMAN, Q14517
Function: Could function as a cell-adhesion protein

Gene Wiki entry for FAT1 (FAT)

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:
UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 4q35   Ensembl cytogenetic band:  4q35.2   HGNC cytogenetic band: 4q35.2

FAT1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 4         GeneLoc Exon Structure

GeneLoc location for GC04M187746:     (about GC identifiers)

Start:
187,745,931 bp from pter
End:
187,881,981 bp from pter
Size:
136,051 bases
Orientation:
minus strand
RefSeq DNA sequence:
NC_000004.10  NT_022792.17  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
About This Section

UniProtKB/Swiss-Prot: FAT1_HUMAN, Q14517 (See protein sequence)
Recommended Name: Protocadherin Fat 1 precursor  
Size: 4590 amino acids; 506278 Da
Subcellular location: Cell membrane; Single-pass type I membrane protein (By similarity)

Post-translational modifications:

  • Phosphorylated upon DNA damage, probably by ATM or ATR1
  • View phosphorylation sites using PhosphoSite2


  • REFSEQ proteins: NP_005236.2  

    ENSEMBL proteins: 
    ENSP00000260147 


    Human Recombinant Proteins 
    Browse Drug Discovery Central at Invitrogen for human recombinant proteins
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    Browse Human Recombinant Proteins at Sigma-Aldrich  
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    Recombinant Proteins from Abcam (FAT)
    Browse Abnova for Human Recombinant Proteins
                    Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 

    2 Gene Ontology (GO) cellular component terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005886 plasma membrane IEA--
    GO:0005887 integral to plasma membrane TAS8586420
    About this table

    Antibodies for FAT1: 
    Browse Antibodies Central at Invitrogen
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    Browse R&D Systems for Antibodies
    Antibodies from Abcam (FAT), each with their AbpromiseSM
    Browse Abnova for Monoclonal and Polyclonal Antibodies
    Search Novus for antibodies for FAT1

    Assays for FAT1: 
    Browse Invitrogen for biochemical assays
    Browse Kits and Assays available from Millipore
    Browse R&D Systems for biochemical assays
    Browse biochemical assays available from Enzo Life Sciences

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    5/11 InterPro domains/families (see all 11 ):
     IPR001881 EGF_Ca_bd
     IPR000742 EGF_3
     IPR013320 ConA-like_subgrp
     IPR001791 Laminin_G
     IPR002126 Cadherin


       GeneDecks  FAT1 for the domains selected above  
    About GeneDecksing

    Graphical View of Domain Structure for InterPro Entry Q14517

    ProtoNet protein and cluster: Q14517

    5 Blocks protein families:
    IPB000152 Aspartic acid and asparagine hydroxylation site
    IPB001791 Laminin G
    IPB001881 EGF-like calcium-binding
    IPB002126 Cadherin
    IPB003129 Thrombospondin


    UniProtKB/Swiss-Prot: FAT1_HUMAN, Q14517
    Similarity: Contains 34 cadherin domains
    Similarity: Contains 5 EGF-like domains
    Similarity: Contains 1 laminin G-like domain

    (According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
    shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
    RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (FAT1)
    Browse for Gene Knock-down Tools from Millipore
    Abnova Chimera RNAi Products for Gene knock-down (FAT)
                  OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005245

                  Applied Biosystems Silencer® siRNAs for FAT1

                  Sigma-Aldrich siRNA and siRNA Panels for FAT1  
                         Sigma-Aldrich shRNA Panels and shRNA for FAT1  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Clones:Browse Clone Ranger at Invitrogen for clones
    Browse Clones for the Expression of Recombinant Proteins Available from Millipore
                  OriGene GFP tagged cDNA clone in CMV expression vector: NM_005245
                                     Myc/DDK tagged cDNA clone in CMV expression vector: NM_005245
                                     untagged cDNA clone in CMV expression vector: NM_005245 

    Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
                  OriGene genome-wide validated SYBR primer pairs: NM_005245

    UniProtKB/Swiss-Prot: FAT1_HUMAN, Q14517
    Function: Could function as a cell-adhesion protein

    Genatlas biochemistry entry for FAT1:
    Drosophila tumor suppressor fat homolog,expressed in many epithelial and some endothelial
    cells,putative adhesion molecule,cadherin superfamilily

    8 MGI mutant phenotypes (inferred from 2 alleles(MGI details for Fat1):

    lethality-postnatallethality-prenatal/perinatalnervous systempigmentationrenal/urinary system
    respiratory systemskin/coat/nailsvision/eye

    2 Gene Ontology (GO) molecular function terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005509 calcium ion binding IEA--
    GO:0005515 protein binding IEA--
    About this table

    (Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
    Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section



    5/9 Interacting proteins for FAT1 (Q145172 ENSP000002601473) via UniProtKB, MINT, and/or STRING (see all 9 )
    InteractantInteraction Details
    GeneCardExternal ID(s)
    HOMER3Q9NSC52, ENSP000003481503MINT-3370401 MINT-3370454 MINT-3370427 MINT-3370268 STRING (score=.968)
    ENAHQ8N8S72, ENSP000002845633MINT-3370478 MINT-3370511 STRING (score=.87)
    HOMER1Q86YM72, ENSP000003343823MINT-3370381 STRING (score=.78)
    FABP4ENSP000002561043STRING (score=.732)
    --P287382MINT-3370187
    --O884482MINT-3370206
    --Q99JP62MINT-3370150 MINT-3370325
    --Q9Z2Y32MINT-3370128
    --O884472MINT-3370225
    About this table

    4 Gene Ontology (GO) biological process terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0007155 cell adhesion TAS8586420
    GO:0007156 homophilic cell adhesion IEA--
    GO:0007267 cell-cell signaling TAS8586420
    GO:0009653 anatomical structure morphogenesis TAS8586420
    About this table
    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
    About This Section

    Browse drugs & compounds from Enzo Life Sciences
    Browse Small Molecules at Sigma-Aldrich

    Browse Tocris compounds for FAT1

    (GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView,
    non coding RNAs according to RNAdb,
    ESTs according to GeneTide,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from Invitrogen, Millipore, and/or Abnova,
    siRNAs from Applied Biosystems, Sigma-Aldrich,
    shRNA from Sigma-Aldrich, OriGene,
    Tagged/untagged cDNA clones from OriGene,
    Expression Assays from Applied Biosystems)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (FAT1)
    Browse for Gene Knock-down Tools from Millipore
    Abnova Chimera RNAi Products for Gene knock-down (FAT)
                  OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005245

                  Sigma-Aldrich siRNA and siRNA Panels for FAT1  
                         Sigma-Aldrich shRNA Panels and shRNA for FAT1  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Applied Biosystems Silencer® siRNAs: 

    NM_005245  

    REFSEQ mRNAs for FAT1 gene: 

    NM_005245.3   

    Applied Biosystems TaqMan ® Gene Expression Assays: 

    NM_005245  

                  OriGene GFP tagged cDNA clone in CMV expression vector: NM_005245
                                     Myc/DDK tagged cDNA clone in CMV expression vector: NM_005245
                                     untagged cDNA clone in CMV expression vector: NM_005245 

    Additional cDNA sequence: 

    AK307938.1 BC012432.1 CR598584.1 D88798.1 EF139845.1 X87241.1 

    16 DOTS entries:

    DT.317047  DT.97801132  DT.75107345  DT.100813734  DT.92444050  DT.102824623  DT.91745710  DT.97786274 
    DT.100813735  DT.92444046  DT.100018351  DT.100740143  DT.40266667  DT.92444051  DT.121236013  DT.92444045 

    24/293 AceView cDNA sequences (see all 293 ):

    AW294542 BM685014 BM724675 BC012432 AW069476 BU729008 AA769841 BM818370 
    BX103284 BM698320 BF515335 AI569323 BI494532 AI217914 BM723967 BP428660 
    BF337432 BQ718467 AI217202 CA489183 AA743948 AI587563 AA639577 AA635705 

    Unigene Cluster for FAT1:

    FAT tumor suppressor homolog 1 (Drosophila)
    Hs.481371  [show with all ESTs]
    Unigene Representative Sequence: NM_005245


    GeneLoc Exon Structure

    5/11 Alternative Splicing Database (ASD) splice patterns (SP) for FAT1 (see all 11 )

    ExUns: 1 ^ 2 ^ 3 ^ 4a · 4b ^ 5 ^ 6 ^ 7 ^ 8 ^ 9a · 9b ^ 10 ^ 11 ^ 12a · 12b ^ 13 ^ 14 ^ 15 ^ 16 ^ 17a · 17b · 17c ^ 18 ^ 19 ^ 20a · 20b ^
    SP1:                                                                                                                                                            
    SP2:                                                                                                                                                            
    SP3:                                                                                                                                                            
    SP4:                                                                                                                                                            
    SP5:                                                                                                                                                            

    ExUns: 21 ^ 22a · 22b ^ 23a · 23b ^ 24 ^ 25 ^ 26a · 26b
    SP1:                                                      
    SP2:                                                      
    SP3:                                                      
    SP4:                                                      
    SP5:                                                      

    About this scheme

    ECgene alternative splicing isoforms for FAT1

    1 Ensembl transcript including schematic representation:
    ENST00000260147  
    (Experimental results according to 1GeneNote and GNF BioGPS,
    probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
    Expression Assays from Applied Biosystems )
    About This Section

    FAT1 expression in normal and diseased human tissues

     Applied Biosystems TaqMan ® Gene Expression Assays for FAT1

    1 / 2

    3 probe-sets matching FAT1 gene


    Affymetrix
    probe-set
    Array  GeneAnnot data GeneNote data GeneTide data
    # genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
    40454_at2 U95-A 1 1.00 1.00 1.00 1.00 -- -- -- -- --

    201579_at2 U133-A 1 1.00 1.00 -- -- -- -- -- -- --

    201579_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
    GeneDecks  FAT1 for binary patterns associated with the probe-sets selected above  
    About GeneDecksing
    About this table    
    Data from (Publications) and GNF BioGPS
        About these images
    About these images

    CGAP SAGE TAG: ACACAGTTTT

    SOURCE GeneReport for Unigene cluster: Hs.481371

    UniProtKB/Swiss-Prot: FAT1_HUMAN, Q14517
    Tissue specificity: Expressed in many epithelial and some endothelial and smooth muscle cells

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
    About This Section


    Orthologs for FAT1 gene from 5/11 species (see all 11 )
    Organism Gene Locus Description Human
    Similarity
    NCBI accessions
    dog
    (Canis familiaris)
    FAT11   -- FAT tumor suppressor homolog 1 (Drosophila) 86.95(n)
    91.17(a)
    475621  XM_532835.2  XP_532835.2 
    cow
    (Bos taurus)
    FAT11   -- FAT tumor suppressor homolog 1 (Drosophila) 84.18(n)
    89.93(a)
    508251  XM_864984.2  XP_870077.1 
    rat
    (Rattus norvegicus)
    Fat11   -- FAT tumor suppressor homolog 1 (Drosophila) 82.93(n)
    88.16(a)
    83720  NM_031819.1  NP_114007.1 
    mouse
    (Mus musculus)
    Fat11, 5 8 (25.00 cM)5
    FAT tumor suppressor homolog 1 (Drosophila)1, 5 82.51(n)1
    88.14(a)1
    141071  NM_001081286.11  NP_001074755.11 
     AA6472115  AJ2507685  (see all 23)
    chicken
    (Gallus gallus)
    FAT1   -- FAT tumor suppressor homolog 1 (Drosophila) 76.35(n)
    81.43(a)
    395168  XM_420680.2  XP_420680.2 
    About this table        Species with no ortholog for FAT1

    ENSEMBL Gene Tree for FAT1
    (Paralogs according to 1HomoloGene
    and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
    About This Section

    Paralogs for FAT1 gene
    FAT32  FAT22  

    (According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
    About This Section


    10/807 NCBI SNPs in FAT1 are shown (see all 807 )
    (Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 282)
    ABGenomic DataTranscription DataAllele Frequencies
    SNP IDValidChr 4 posSequenceRecsAA
    Chg
    TypeMoreRecsAllele
    freq
    PopTotal
    sample
    More
    ------------
    rs3678631,2
    A,C,F,H187866134(+) CTAAAC/GAAATC 1 F/L mis114Minor allele frequency- G:0.33MN NA EU EA WA 1210
    rs3284181,2
    A,C,F,H187794887(-) CTATCA/GCGTCA 1 H/R mis1 ese312Minor allele frequency- C:0.01MN EU EA WA NA 1158
    rs119395751,2
    A,C,F,H187864786(+) TCTTCC/TGGCGT 1 R/G mis1 ese38Minor allele frequency- T:0.32EU EA WA 836
    rs37334141,2
    A,C,F,H187866764(+) GGTGTA/CCTTTT 1 S/R mis117Minor allele frequency- C:0.27EA NA EU WA 2896
    rs26377771,2
    C,F,H187762014(-) TCACCG/TCTTCT 1 S/A mis1 ese314Minor allele frequency- N:0.00EA NA EU WA 2604
    rs37334061,2
    C,F,H187776582(+) TCCAAT/CAGGCA 1 V/I mis1 ese313Minor allele frequency- C:0.04EA NA EU WA 2532
    rs37334131,2
    C,F,H187866532(+) CATGAC/TAGTAG 1 V/I mis1 ese315Minor allele frequency- T:0.28EU EA WA NA 1511
    rs37966481,2
    C,F,H187777912(+) ATGTCG/CTCTAC 1 E/D mis1 ese39Minor allele frequency- C:0.09EU EA WA NA 906
    rs23048671,2
    C,F,H187786422(-) TCACCG/ACTTCC 1 T/A mis1 ese312Minor allele frequency- A:0.13EA NA EU WA 2450
    rs12800971,2
    C,F,H187756200(+) CATGGG/CTTGGA 1 N/K mis1 ese36Minor allele frequency- C:0.00MN EU EA WA NA 672
    About this table

    HapMap Linkage Disequilibrium images for FAT1 (up to first 250kb)

    (in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
    About This Section

    OMIM: 600976

    2 Novoseek disease relationships for FAT1 gene

    Disease   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    breast cancer 4.49 3 16581652 (2), 16865240 (1)
    tumors 0.00 1 15922730 (1)
    About this table

    Human Genome Epidemiology Navigator: FAT1 (2 documents)

    (Possibly Related Articles in Doctor's Guide)
    About This Section

    (in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
    About This Section

    10/32 PubMed articles for FAT1 gene (see all 32 ):
    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section

     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)
    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
    About This Section

    Entrez Gene: 2195 HGNC: 3595 AceView: FAT Ensembl:ENSG00000083857 euGenes: HUgn2195
    ECgene: FAT1 H-InvDB: FAT1
    (According to HUGE)
    About This Section

      --
    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section

      --
    (Available from WIS Yeda, Salk, Tufts)
    About This Section

      --
    (Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
    Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
    Enzo Life Sciences, and/or Tocris Bioscience)
    About This Section



    Products for FAT1:
     TaqMan ® Gene Expression Assays
     TaqMan ® Genotyping Assays
      Free SNP selection tool



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     Predesigned and custom siRNAs for FAT1 Antibodies for FAT1
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