 |
 | Services
| |
 |
Aliases & Descriptions for FAT1
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| CDHF7 1, 2, 3 | | FAT 2, 3, 5 | | ME5 2 | | hFat1 2 |
| | | Descriptions |
|---|
| Cadherin-related tumor suppressor homolog 3 | | FAT tumor suppressor (Drosophila) homolog 1 | | FAT tumor suppressor 1 2 | | FAT tumor suppressor homolog 1 (Drosophila) 2 | | Protein fat homolog 3 | | cadherin ME5 2 | | cadherin family member 7 2 | | cadherin-related tumor suppressor 2 |
|
| | Search outside databases for aliases for FAT1 gene |
Summaries for FAT1(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for FAT1: This gene is an ortholog of the Drosophila fat gene, which encodes a tumor suppressor essential for controlling cell proliferation during Drosophila development. The gene product is a member of the cadherin superfamily, a group of integral membrane proteins characterized by the presence of cadherin-type repeats. In addition to containing 34 tandem cadherin-type repeats, the gene product has five epidermal growth factor (EGF)-like repeats and one laminin A-G domain. This gene is expressed at high levels in a number of fetal epithelia. Its product probably functions as an adhesion molecule and/or signaling receptor, and is likely to be important in developmental processes and cell communication. Transcript variants derived from alternative splicing and/or alternative promoter usage exist, but they have not been fully described. [provided by RefSeq] UniProtKB/Swiss-Prot: FAT1_HUMAN, Q14517Function: Could function as a cell-adhesion proteinGene Wiki entry for FAT1 (FAT) |
Genomic Location for FAT1
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 4q35 Ensembl cytogenetic band: 4q35.2 HGNC cytogenetic band: 4q35.2FAT1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 4 GeneLoc Exon Structure GeneLoc location for GC04M187746:
(about GC identifiers)
Start:
|
187,745,931 bp from pter |
End:
|
187,881,981 bp from pter |
Size:
|
136,051 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000004.10 NT_022792.17
| Proteins for FAT1
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: FAT1_HUMAN, Q14517 (See
protein sequence)Recommended Name: Protocadherin Fat 1 precursor Size: 4590 amino acids; 506278 Da
Subcellular location: Cell membrane; Single-pass type I membrane protein (By similarity)Post-translational modifications:
Phosphorylated upon DNA damage, probably by ATM or ATR1
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_005236.2
ENSEMBL proteins: ENSP00000260147
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
2 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for FAT1: Assays for FAT1: | Protein
Domains/ Families for FAT1(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q14517
ProtoNet protein and cluster: Q14517 5 Blocks protein families: IPB000152 Aspartic acid and asparagine hydroxylation site IPB001791 Laminin G IPB001881 EGF-like calcium-binding IPB002126 Cadherin IPB003129 Thrombospondin
UniProtKB/Swiss-Prot: FAT1_HUMAN, Q14517Similarity: Contains 34 cadherin domainsSimilarity: Contains 5 EGF-like domainsSimilarity: Contains 1 laminin G-like domain | Gene Function for FAT1
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005245
Applied Biosystems Silencer® siRNAs for FAT1
Sigma-Aldrich siRNA and siRNA Panels for FAT1  Sigma-Aldrich shRNA Panels and shRNA for FAT1  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_005245                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_005245                                  untagged cDNA clone in CMV expression vector: NM_005245 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_005245
UniProtKB/Swiss-Prot: FAT1_HUMAN, Q14517Function: Could function as a cell-adhesion proteinGenatlas biochemistry entry for FAT1:Drosophila tumor suppressor fat homolog,expressed in many epithelial and some endothelial cells,putative adhesion molecule,cadherin superfamilily8 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Fat1):
2 Gene Ontology (GO) molecular function terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005509 | calcium ion binding |
IEA | -- | | GO:0005515 | protein binding |
IEA | -- | About this table | Pathways & Interactions for FAT1
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
5/9 Interacting proteins for FAT1 (Q145172 ENSP000002601473) via UniProtKB, MINT, and/or STRING (see all 9
)About this table
4 Gene Ontology (GO) biological process terms (links to tree view): About this table
|
Drugs & Compounds for FAT1(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for FAT1
|
Transcripts for FAT1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005245
Sigma-Aldrich siRNA and siRNA Panels for FAT1  Sigma-Aldrich shRNA Panels and shRNA for FAT1  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_005245 REFSEQ mRNAs for FAT1 gene: NM_005245.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_005245               OriGene GFP tagged cDNA clone in CMV expression vector: NM_005245                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_005245                                  untagged cDNA clone in CMV expression vector: NM_005245  Additional cDNA sequence: AK307938.1 BC012432.1 CR598584.1 D88798.1 EF139845.1 X87241.1 16 DOTS entries: DT.317047 DT.97801132 DT.75107345 DT.100813734 DT.92444050 DT.102824623 DT.91745710 DT.97786274 DT.100813735 DT.92444046 DT.100018351 DT.100740143 DT.40266667 DT.92444051 DT.121236013 DT.92444045 24/293 AceView cDNA sequences (see all 293
):AW294542 BM685014 BM724675 BC012432 AW069476 BU729008 AA769841 BM818370 BX103284 BM698320 BF515335 AI569323 BI494532 AI217914 BM723967 BP428660 BF337432 BQ718467 AI217202 CA489183 AA743948 AI587563 AA639577 AA635705 Unigene Cluster for FAT1: FAT tumor suppressor homolog 1 (Drosophila) Hs.481371 [show with all ESTs]Unigene Representative Sequence: NM_005245
GeneLoc Exon Structure
5/11 Alternative Splicing Database (ASD) splice patterns (SP) for FAT1 (see all 11
)
| ExUns: | 1 | ^ | 2 | ^ | 3 | ^ | 4a | · | 4b | ^ | 5 | ^ | 6 | ^ | 7 | ^ | 8 | ^ | 9a | · | 9b | ^ | 10 | ^ | 11 | ^ | 12a | · | 12b | ^ | 13 | ^ | 14 | ^ | 15 | ^ | 16 | ^ | 17a | · | 17b | · | 17c | ^ | 18 | ^ | 19 | ^ | 20a | · | 20b | ^ | |
| SP1: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
| ExUns: | 21 | ^ | 22a | · | 22b | ^ | 23a | · | 23b | ^ | 24 | ^ | 25 | ^ | 26a | · | 26b | |
| SP1: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for FAT1
1 Ensembl transcript including schematic representation: ENST00000260147
|
Expression for FAT1
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| FAT1 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for FAT1
1 / 2 3 probe-sets matching FAT1 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: ACACAGTTTT
SOURCE GeneReport for Unigene cluster: Hs.481371 UniProtKB/Swiss-Prot: FAT1_HUMAN, Q14517Tissue specificity: Expressed in many epithelial and some endothelial and smooth muscle cells |
Orthologs for FAT1
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for FAT1 gene from 5/11 species (see all 11
)
About this table Species with no ortholog for FAT1
ENSEMBL Gene Tree for FAT1 | Paralogs for FAT1(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for FAT1 gene
- FAT32 FAT22
|
SNPs/Variants for FAT1(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for FAT1 (up to first 250kb)
|
Disorders & Mutations for FAT1
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 600976
2 Novoseek disease relationships for FAT1 gene
About this table
Human Genome Epidemiology Navigator: FAT1 (2 documents)
|
Medical News for FAT1(Possibly Related Articles in
Doctor's Guide)
About This Section
| |
Publications for FAT1 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/32 PubMed articles for FAT1 gene (see all 32
):- Molecular cloning and tissue expression of FAT, the human homologue of the Drosophila fat gene that is located on chromosome 4q34-q35 and encodes a putative adhesion molecule. (PubMed id 8586420)1, 2, 3, 4 Dunne J.... Owen M.J. (1995)
- Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983)3, 4 Olsen J.V....Mann M. (2006)
- Differentially spliced isoforms of FAT1 are asymmetrically distributed within migrating cells. (PubMed id 17500054)1, 3 Braun G.S....Moeller M.J. (2007)
- Processing of the human protocadherin Fat1 and translocation of its cytoplasmic domain to the nucleus. (PubMed id 15922730)1, 3 Magg T....Hofer H.W. (2005)
- The intracellular domain of the human protocadherin hFat1 interacts with Homer signalling scaffolding proteins. (PubMed id 16979624)1, 3 Schreiner D....Hofer H.W. (2006)
- Frequent loss of heterozygosity and altered expression of the candidate tumor suppressor gene 'FAT' in human astrocytic tumors. (PubMed id 19126244)3 Chosdol K....Sinha S. (2009)
- Case-control association study of 65 candidate genes revealed a possible association of a SNP of HTR5A to be a factor susceptible to bipolar disease in Bulgarian population. (PubMed id 19328558)3 Yosifova A....Nakamura Y. (2009)
- Glycoproteomics analysis of human liver tissue by combination of multiple enzyme digestion and hydrazide chemistry. (PubMed id 19159218)4 Chen R.... Zou H. (2009)
- Combining protein-based IMAC, peptide-based IMAC, and MudPIT for efficient phosphoproteomic analysis. (PubMed id 18220336)4 Cantin G.T....Yates J.R. III (2008)
- Genetic variation of the FAT gene at 4q35 is associated with bipolar affective disorder. (PubMed id 17938632)3 Abou Jamra R....Cichon S. (2008)
|
Search for FAT1
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing FAT1
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing FAT1
(According to HUGE)
About This Section
| -- |
Specialized Databases showing FAT1(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for FAT1(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for FAT1:

 | |
 | | | | |
|
 |  |  |
| | Recombinant Proteins (FAT) | | Antibodies (FAT) |
| | | Search Tocris compounds for FAT1 |
|
 |
 | | | |
GeneCards Homepage - Last full update: 1 Jul 2009
Incremental update: 13 Oct 2009
|