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FAR2P2 Gene(Pseudogene)

Fatty Acyl-CoA Reductase 2 Pseudogene 2

GCID:
GC02M130416
GIFtS:
16
Genes Participants
UDN Logo

Aliases for FAR2P2 Gene

Aliases for FAR2P2 Gene

  • Fatty Acyl-CoA Reductase 2 Pseudogene 2 2 3 5

External Ids for FAR2P2 Gene

Previous GeneCards Identifiers for FAR2P2 Gene

  • GC02M131177

Summaries for FAR2P2 Gene

GeneCards Summary for FAR2P2 Gene

FAR2P2 (Fatty Acyl-CoA Reductase 2 Pseudogene 2) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAR2P2 Gene

Genomics for FAR2P2 Gene

Products:

  1. Regulatory Element

Regulatory Elements for FAR2P2 Gene

Enhancers for FAR2P2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02G130389 1.8 FANTOM5 Ensembl ENCODE dbSUPER 7.4 +40.2 40167 2.8 PKNOX1 FOXA2 ATF1 ARID4B SIN3A DMAP1 ZNF48 YY1 GLIS2 ZNF143 PTPN18 FAR2P2 AMER3 CCDC115 LOC105373618 PIR36289
GH02G130386 0.7 dbSUPER 7.5 +43.6 43566 3.1 BCOR RFX1 NR2F1 BHLHE40 ZMYM3 DPF2 TBX21 ATF2 NFIC EGR1 PTPN18 FAR2P2 LOC105373618 PIR36289
GH02G129959 0.5 ENCODE 4.8 +472.5 472451 0.1 GATA3 ZNF512 FOXA1 FAR2P2 RPL22P7 RAB6C
GH02G130428 0.5 Ensembl 0.7 +2.7 2662 1.0 NRF1 ELF1 REST FOXP1 FAR2P2 KLF2P2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FAR2P2 on UCSC Golden Path with GeneCards custom track

Genomic Location for FAR2P2 Gene

Chromosome:
2
Start:
130,416,750 bp from pter
End:
130,431,363 bp from pter
Size:
14,614 bases
Orientation:
Minus strand

Genomic View for FAR2P2 Gene

Genes around FAR2P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAR2P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAR2P2 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for FAR2P2 Gene

Proteins for FAR2P2 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for FAR2P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for FAR2P2 Gene

Domains & Families for FAR2P2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for FAR2P2 Gene

Function for FAR2P2 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAR2P2 Gene

Localization for FAR2P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FAR2P2 Gene

Pathways & Interactions for FAR2P2 Gene

SuperPathways for FAR2P2 Gene

PathCards logo More details on SuperPathways for FAR2P2
No Data Available

Interacting Proteins for FAR2P2 Gene

Gene Ontology (GO) - Biological Process for FAR2P2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAR2P2 Gene

Drugs & Compounds for FAR2P2 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for FAR2P2 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for FAR2P2 Gene

(8) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAR2P2 Gene

No ASD Table

Relevant External Links for FAR2P2 Gene

GeneLoc Exon Structure for
FAR2P2
ECgene alternative splicing isoforms for
FAR2P2

Expression for FAR2P2 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FAR2P2 Gene

mRNA expression in normal human tissues for FAR2P2 Gene
mRNA expression by GTEx for FAR2P2 Gene

mRNA differential expression in normal tissues according to GTEx for FAR2P2 Gene

This gene is overexpressed in Brain - Hypothalamus (x4.1).

NURSA nuclear receptor signaling pathways regulating expression of FAR2P2 Gene:

FAR2P2
genes like me logo Genes that share expression patterns with FAR2P2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAR2P2 Gene

Orthologs for FAR2P2 Gene

Evolution for FAR2P2 Gene

ENSEMBL:
Gene Tree for FAR2P2 (if available)
TreeFam:
Gene Tree for FAR2P2 (if available)

No data available for Orthologs for FAR2P2 Gene

Paralogs for FAR2P2 Gene

No data available for Paralogs for FAR2P2 Gene

Variants for FAR2P2 Gene

Sequence variations from dbSNP and Humsavar for FAR2P2 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1000883282 -- 130,426,411(+) TTTTC(A/C)ATTTC intron-variant
rs1000973966 -- 130,419,058(+) ATTGA(C/T)TCAGC intron-variant
rs1001004890 -- 130,419,302(+) CATCA(A/C)ACTGG intron-variant
rs1001564657 -- 130,426,967(+) AGAAA(A/T)ATCCG intron-variant
rs1002046306 -- 130,427,530(+) GAATT(C/T)AATAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FAR2P2 Gene

Variant ID Type Subtype PubMed ID
dgv2032n106 OTHER inversion 24896259
dgv7083n54 CNV loss 21841781
esv27361 CNV loss 19812545
esv2759092 CNV gain+loss 17122850
esv3893326 CNV gain 25118596
nsv1005664 CNV loss 25217958
nsv10169 CNV loss 18304495
nsv1146033 CNV duplication 26484159
nsv1147463 OTHER inversion 26484159
nsv428403 CNV loss 18775914
nsv7327 OTHER inversion 18451855
nsv963720 CNV duplication 23825009
nsv963844 CNV duplication 23825009
nsv979260 CNV duplication 23825009
nsv998333 CNV gain+loss 25217958

Relevant External Links for FAR2P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAR2P2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAR2P2 Gene

Disorders for FAR2P2 Gene

Relevant External Links for FAR2P2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAR2P2

No disorders were found for FAR2P2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAR2P2 Gene

Publications for FAR2P2 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  3. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R. … Stanton L.W. (Nat. Biotechnol. 2004) 3 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64
  5. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3 64

Products for FAR2P2 Gene

Sources for FAR2P2 Gene

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