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FAR2P1 Gene(Pseudogene)

Fatty Acyl-CoA Reductase 2 Pseudogene 1

GCID:
GC02M129990
GIFtS:
22
Genes Participants
UDN Logo

Aliases for FAR2P1 Gene

Aliases for FAR2P1 Gene

  • Fatty Acyl-CoA Reductase 2 Pseudogene 1 2 3 5
  • Fatty Acyl CoA Reductase 2 Pseudogene 1 4
  • Fatty Acyl-CoA Reductase 2-Like 3
  • Epididymis Luminal Protein 182 3
  • HEL-182 3

External Ids for FAR2P1 Gene

Previous GeneCards Identifiers for FAR2P1 Gene

  • GC02M130767

Summaries for FAR2P1 Gene

GeneCards Summary for FAR2P1 Gene

FAR2P1 (Fatty Acyl-CoA Reductase 2 Pseudogene 1) is a Pseudogene. GO annotations related to this gene include fatty-acyl-CoA reductase (alcohol-forming) activity.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAR2P1 Gene

Genomics for FAR2P1 Gene

Products:

  1. Regulatory Element

Regulatory Elements for FAR2P1 Gene

Enhancers for FAR2P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02G130354 1.1 ENCODE 4.3 -304.8 -304820 2.1 HDGF HNRNPUL1 PKNOX1 CREB3L1 ZFP64 ARID4B SIN3A DMAP1 YY1 SLC30A9 PTPN18 FAR2P1 PIR60541
GH02G130376 1 ENCODE dbSUPER 4.4 -326.0 -325995 1.4 CTCF PKNOX1 TBL1XR1 BMI1 EBF1 RAD21 RELA ARID3A EED RELB PTPN18 FAR2P1 PIR32046 PIR49689
GH02G130526 0.2 dbSUPER 4.5 -477.2 -477150 4.5 PTPN18 FAR2P1 ENSG00000225819 ENSG00000225341
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around FAR2P1 on UCSC Golden Path with GeneCards custom track

Genomic Location for FAR2P1 Gene

Chromosome:
2
Start:
129,990,456 bp from pter
End:
130,051,131 bp from pter
Size:
60,676 bases
Orientation:
Minus strand

Genomic View for FAR2P1 Gene

Genes around FAR2P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAR2P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAR2P1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for FAR2P1 Gene

Proteins for FAR2P1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for FAR2P1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6ZU82-FAR2L_HUMAN
    Recommended name:
    Putative inactive fatty acyl-CoA reductase 2-like protein
    Protein Accession:
    Q6ZU82
    Secondary Accessions:
    • A6NMP0

    Protein attributes for FAR2P1 Gene

    Size:
    131 amino acids
    Molecular mass:
    15698 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAC86344.2; Type=Erroneous translation; Note=Wrong choice of CDS.; Evidence={ECO:0000305};

neXtProt entry for FAR2P1 Gene

Post-translational modifications for FAR2P1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for FAR2P1 Gene

Domains & Families for FAR2P1 Gene

Protein Domains for FAR2P1 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

Q6ZU82

UniProtKB/Swiss-Prot:

FAR2L_HUMAN :
  • Belongs to the fatty acyl-CoA reductase family.
Family:
  • Belongs to the fatty acyl-CoA reductase family.
genes like me logo Genes that share domains with FAR2P1: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for FAR2P1 Gene

Function for FAR2P1 Gene

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  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Gene Ontology (GO) - Molecular Function for FAR2P1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0080019 fatty-acyl-CoA reductase (alcohol-forming) activity IEA --
genes like me logo Genes that share ontologies with FAR2P1: view

Inhibitory RNA Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for FAR2P1 Gene

Localization for FAR2P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for FAR2P1 Gene

Pathways & Interactions for FAR2P1 Gene

SuperPathways for FAR2P1 Gene

PathCards logo More details on SuperPathways for FAR2P1
No Data Available

Interacting Proteins for FAR2P1 Gene

Gene Ontology (GO) - Biological Process for FAR2P1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0055114 oxidation-reduction process IEA --
genes like me logo Genes that share ontologies with FAR2P1: view

No data available for Pathways by source and SIGNOR curated interactions for FAR2P1 Gene

Drugs & Compounds for FAR2P1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for FAR2P1 Gene

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  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for FAR2P1 Gene

(1) REFSEQ mRNAs :
(52) Selected AceView cDNA sequences:
(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for FAR2P1 Gene

No ASD Table

Relevant External Links for FAR2P1 Gene

GeneLoc Exon Structure for
FAR2P1
ECgene alternative splicing isoforms for
FAR2P1

Expression for FAR2P1 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for FAR2P1 Gene

mRNA expression in normal human tissues for FAR2P1 Gene
mRNA expression by GTEx for FAR2P1 Gene

mRNA differential expression in normal tissues according to GTEx for FAR2P1 Gene

This gene is overexpressed in Testis (x34.0).

NURSA nuclear receptor signaling pathways regulating expression of FAR2P1 Gene:

FAR2P1
genes like me logo Genes that share expression patterns with FAR2P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for FAR2P1 Gene

Orthologs for FAR2P1 Gene

Evolution for FAR2P1 Gene

ENSEMBL:
Gene Tree for FAR2P1 (if available)
TreeFam:
Gene Tree for FAR2P1 (if available)

No data available for Orthologs for FAR2P1 Gene

Paralogs for FAR2P1 Gene

No data available for Paralogs for FAR2P1 Gene

Variants for FAR2P1 Gene

Sequence variations from dbSNP and Humsavar for FAR2P1 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1000337129 -- 130,042,625(+) ATAAA(C/G)CTTAG intron-variant
rs1000338213 -- 130,048,528(+) CACTG(G/T)CTCTG nc-transcript-variant
rs1000521873 -- 130,037,563(+) CTACT(G/T)TTTTT intron-variant
rs1000588681 -- 130,036,595(+) ATAGA(A/G)TAATA intron-variant
rs1000617662 -- 130,043,993(+) ACATA(A/C/G)ACACA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FAR2P1 Gene

Variant ID Type Subtype PubMed ID
dgv1169e212 CNV loss 25503493
dgv2032n106 OTHER inversion 24896259
dgv4071n100 CNV loss 25217958
dgv4072n100 CNV loss 25217958
esv25418 CNV loss 19812545
esv2674382 CNV deletion 23128226
esv2751826 CNV gain 17911159
esv2759092 CNV gain+loss 17122850
esv2760631 CNV gain+loss 21179565
esv2763387 CNV loss 21179565
esv3584065 CNV loss 25503493
esv3592435 CNV loss 21293372
esv3592437 CNV loss 21293372
nsv1003941 CNV gain 25217958
nsv1008911 CNV gain 25217958
nsv1011360 CNV loss 25217958
nsv10158 CNV loss 18304495
nsv10159 CNV loss 18304495
nsv1141361 CNV duplication 24896259
nsv1160865 OTHER complex 26073780
nsv428403 CNV loss 18775914
nsv442833 CNV loss 18776908
nsv459274 CNV loss 19166990
nsv517144 CNV loss 19592680
nsv583046 CNV loss 21841781
nsv821629 CNV loss 15273396
nsv834374 CNV gain 17160897
nsv961880 CNV duplication 23825009
nsv961881 CNV duplication 23825009
nsv962002 CNV duplication 23825009

Relevant External Links for FAR2P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
FAR2P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for FAR2P1 Gene

Disorders for FAR2P1 Gene

Relevant External Links for FAR2P1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAR2P1

No disorders were found for FAR2P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAR2P1 Gene

Publications for FAR2P1 Gene

  1. LncRNA expression profiles of EGFR exon 19 deletions in lung adenocarcinoma ascertained by using microarray analysis. (PMID: 25085781) Wang Y. … Pan J. (Med. Oncol. 2014) 2 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  3. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PMID: 15815621) Hillier L.W. … Wilson R.K. (Nature 2005) 4 64
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 64
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for FAR2P1 Gene

Sources for FAR2P1 Gene

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